Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G63300 809 / 0 Myosin heavy chain-related protein (.1) AT5G41140 732 / 0 Myosin heavy chain-related protein (.1.2) AT5G52280 375 / 1e-114 Myosin heavy chain-related protein (.1) AT1G22060 144 / 2e-34 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G106700 [exp] 1276 / 0 AT1G63300 603 / 0.0 Myosin heavy chain-related protein (.1) Potri.015G143800 [exp] 536 / 2e-174 AT5G52280 594 / 0.0 Myosin heavy chain-related protein (.1) Potri.012G141200 [exp] 338 / 1e-98 AT5G52280 322 / 7e-95 Myosin heavy chain-related protein (.1) Potri.005G170066 [exp] 160 / 1e-39 AT1G22060 1031 / 0.0 unknown protein Potri.002G091700 [exp] 152 / 7e-37 AT1G22060 1546 / 0.0 unknown protein Potri.008G029800 [exp] 109 / 6e-24 AT1G22060 117 / 5e-26 unknown protein Potri.006G120400 [exp] 57 / 1e-07 AT1G22060 121 / 2e-27 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024517 [exp] 539 / 7e-174 AT5G41140 482 / 9e-154 Myosin heavy chain-related protein (.1.2) Lus10001481 [exp] 510 / 5e-162 AT5G41140 476 / 1e-150 Myosin heavy chain-related protein (.1.2) Lus10008012 [exp] 490 / 2e-155 AT5G41140 473 / 3e-150 Myosin heavy chain-related protein (.1.2) Lus10038860 [exp] 463 / 7e-147 AT1G63300 614 / 0.0 Myosin heavy chain-related protein (.1) Lus10039218 [exp] 457 / 1e-144 AT5G52280 618 / 0.0 Myosin heavy chain-related protein (.1) Lus10027462 [exp] 457 / 2e-144 AT1G63300 612 / 0.0 Myosin heavy chain-related protein (.1) Lus10014980 [exp] 430 / 1e-134 AT1G63300 537 / 9e-179 Myosin heavy chain-related protein (.1) Lus10008482 [exp] 436 / 9e-134 AT1G63300 406 / 4e-124 Myosin heavy chain-related protein (.1) Lus10001482 [exp] 308 / 7e-95 AT1G63300 298 / 5e-92 Myosin heavy chain-related protein (.1) Lus10020915 [exp] 150 / 4e-36 AT1G22060 985 / 0.0 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0154 [poplar] [flax] C2 PF10358 [poplar] [flax] NT-C2 N-terminal C2 in EEIG1 and EHBP1 proteins
Representative CDS sequence Show only first row Show all	>Potri.003G124600.1 pacid=42787155 polypeptide=Potri.003G124600.1.p locus=Potri.003G124600 ID=Potri.003G124600.1.v4.1 annot-version=v4.1 ATGTTCAGGTCGGCGAGATGGAGGGGCGAGAAGAACAAGATCAAAACTGTCTTCAAGTTGCAGTTTCATGCAACTCAGCTGCCGCAACTGAATGTGAATG CATTGGTTGTATCTGTGGTTCCTGGAGATGCGGGGAAGCCAACAGTGAGTTTAGAGAAGGGTATACTCAGACAAGGAAGTTGTCGATGGGACTATCCGGT TCACGAAACAGTGAAATACATTCGTGATGTGAAAACAGGGAAGATCAATGAGAGAATATACCATTTTGTGGTCTCCACTGGATCGTCAAAAAATAGTCTG GTAGGGGAGGTTTCAATAGATTTTGCCGATTATGCAGAGGCGACTAAAGCTTCCACAGTTTCTCTTCCTTTCAAGAATTCAAAATCTAATGGGGTATTGC ATGTTTCAATTCAGAGGCTGCAAGAAAATGTTGAGCAAAGTGAGGTGATGGAAGGTGAAGATGCAAATGTAAAATCCCAGAGCAGAACATTGAACACCCT ATTAAGCAATAGTAACATAGATGAGGGTATTGATAGTCATTCCAGCGAAGATGGACCACTTATTAATGGTGCCCACACTGCTGATTTAAATGTCAATGAC AGAACTTCTAGTGGATCTGACATTACATTGTCAAGTTCTGAAAGTAGCTCTGGGCTCAATACCCCACGAGAACTTGGATTGAGAAACAACATGCTACAGG ACCCTATTAGCTTTCTTTCGTCTCAAACCCAGACTTCAGCATCTCACCTGTCAAAAGCAAATGCTTCTGCAGCAAACTATGGAGAGCATCGGCAACAGCA ATGGGAGTTATCAGCAGATTCTGATCATGGGACAAGTACTGATGACTCGACAAACAGTTCTCAAGGCAACCTTATAAGAGAGAGATCTCAACAGGTGTCA GATATGGATATGGAAAAGCTGAAGGCTGAACTCGTTATGTTGTCAAGACAGGCAGATGTGTCAGAGATGGAAATACAAACTCTGCGAAAGCAAATTGTAA AAGAGAGCAAAAGGGGGCAGGATCTCTCTAGAGAAATCTTGGGATTAAAAGGGGAGCGAGACATGCTCAAGTCAGAGTGTGAGAAACTCAAGGCATTTCA GAAACGCATGGAGGAGGCAAGAAGCAAAAACAAATCGCAGTTTGAAGGTGGCGATCCATGGGTTCTTCTTGAAGAAGTTCGACAAGAACTAAATTATGAG AAGGACCTAAATTCCAACCTCCGGCTACAGCTGCAGAAAACGCAGGAATCAAATGCTGAGTTGATACTTGCTGTGAAAGACCTTGATGAAATGTTAGAGC AGAAAAGTAAGGGAACATCTGACCTTTCCAACAAAGCAAGATCCTATGAGAATGCTATCTCAAGAAGTGAGACTGATGATGATGAAGAGCAAAAGGCACT GGAAGTACTTGTTAAGGAGCATAAGGATGCTAAAGAAACTTATCTGTTGGAGCAAAAGATTATGGACCTCTGCAGTGAAATAGAAATCTACAGGAGAGAT AGAGATGAGCTGGAGATGCAAATGGAGCAGCTTGCACTTGATTATGAGATATTGAAGCAGGAGAACCATGACATGTCATATAAATTAGAACAAAGTCAGC TGCAAGAACAGCTGAAGATGCAGTATGAATGCTCCCCTTTCTTTCCCAACATTAACGAACAAGAAGCTCAGATTGAGAGCTTAGAAAATGAACTGAAGAT GCAGTCAGAGGAAAACTTTGATTCTTTGGCCACCATAAAGGAACTAGAAACCCATATCAAGAGCTTGGAGGAAGAATTGGAAAAGCAGGCCCAAGAGTTT GAAGCTGATCTGGAGGCTGTAACACGTGCAAGAGTTGAGCAGGAGCAGAGAGCCATTCAAGCAGAGGAAGCCTTGCGAAAGACAAGATTGAAAAATGCTA CTGCAGCTGAGAAGCTGCAGGAAGAATTTAGAAGGCTGTCCATGCAAATGGCATCGACTTTTGACGCAAACGAGAAGGTAGCTATGAAAGCTCTTGCAGA AGCTAGTGAACATCGTATGCAGAAAGTTCAACTGGAAGAAATGCTTCAGAAAGCTAATGAGGAGCTCCAATCAATTACGGATGGTTATGAGTCAAAACTG CATGATCTTTCCAACCAACTGAAATTGAAAATGCATCAGATAGAACAGATGATGATGGAAATTGATGATAAATCCAGACTGCTTGAACAGCTAAAGAAGC TGGATGAAGAACATGGCGGGGCTTCATCCCAGGAAATCCAAGGCTTAAAAACTGAGCTTGAAATGCTCACAATAGAAAACAATAACCTTTTGAAGCAAGC AGAACATAAAGAAAGTATGAGTTTAGAGCTGGAACAAATAAAGACATCAATTAAGCACACTGAAGCACTGGTACAAAAGGGAGATATGGAACGGGATGAA CTGGTGGGTACAATTTCTTTGTTGAAGAAGGAAGCGGAGAAGTCGCTGGTGGAGTTAAATAGGATGAGATGTCTCAAGGATGAGAAGGAAGCAGCAATGA ATGTCTTGCAATCAGAGGTGGGAATGCTTAAAGCTCAGTGTGATAACTTGAAACATTCTGTGTTTGAGGATGAGTTGGAAAAGGAAAAACTTAGAAAGCA GTTAGTCCAATTAAAAAGTGAGCTGAAGAAGAAGGAAGATGCTTTGAACAGCATGGAGAAGAAAATCAAGGAAAGCAGCAAACGCTCAGCAGTTTCTGAA GGAACAAAGACTAATCTGAGAAACAACAAGTCTGCTCCAGTTCCTTATGGCTCTAAAGAGGTGGCAAATCTGAGGGAGAAAATAAAATTGCTTGAGGGAC AAATTAAGTTAAAGGAGACTGCTTTAGAAGCCTCTGCAAGCTCGTTTGCAGAGAAGGAAAGGGATCTTCAAAACAAAATTGAAGAGTTGGTTAGCAGATT GGAAGAACTCAACCAGAATAGTGCAATTTTCTGCTATAACCAACCTCAAAAGTTATCTGAAGACGACATTGGAGTTAATTCAAATGGTGATGTAGCTGAA GATTATAGAAACACGGATGAAAATCCAAGCAGTTCATATGGGACGTGCAAAGAAAATGGGAATTCGAGATTGTTAATCAAGAGCGATCATTCCACTGCAT CAGAGCAAGAACCAAAAGCCTCCTGTATCAATAACACAGACCACAATGCTGATAAGTTGTTGAGTGAACTAGTGACATTGAAGGAGAGAAACAAAACGAT GGAAAATGAACTGAAGGAGATGCAAGAGAGATATTCGGAAATAAGTCTCAAGTTTGCAGAGGTAGAAGGAGAAAGACAACAGCTTGTGATGACACTACGG AATCTTAAGAATGCCAGAAAGAGCTAA
AA sequence Show only first row Show all	>Potri.003G124600.1 pacid=42787155 polypeptide=Potri.003G124600.1.p locus=Potri.003G124600 ID=Potri.003G124600.1.v4.1 annot-version=v4.1 MFRSARWRGEKNKIKTVFKLQFHATQLPQLNVNALVVSVVPGDAGKPTVSLEKGILRQGSCRWDYPVHETVKYIRDVKTGKINERIYHFVVSTGSSKNSL VGEVSIDFADYAEATKASTVSLPFKNSKSNGVLHVSIQRLQENVEQSEVMEGEDANVKSQSRTLNTLLSNSNIDEGIDSHSSEDGPLINGAHTADLNVND RTSSGSDITLSSSESSSGLNTPRELGLRNNMLQDPISFLSSQTQTSASHLSKANASAANYGEHRQQQWELSADSDHGTSTDDSTNSSQGNLIRERSQQVS DMDMEKLKAELVMLSRQADVSEMEIQTLRKQIVKESKRGQDLSREILGLKGERDMLKSECEKLKAFQKRMEEARSKNKSQFEGGDPWVLLEEVRQELNYE KDLNSNLRLQLQKTQESNAELILAVKDLDEMLEQKSKGTSDLSNKARSYENAISRSETDDDEEQKALEVLVKEHKDAKETYLLEQKIMDLCSEIEIYRRD RDELEMQMEQLALDYEILKQENHDMSYKLEQSQLQEQLKMQYECSPFFPNINEQEAQIESLENELKMQSEENFDSLATIKELETHIKSLEEELEKQAQEF EADLEAVTRARVEQEQRAIQAEEALRKTRLKNATAAEKLQEEFRRLSMQMASTFDANEKVAMKALAEASEHRMQKVQLEEMLQKANEELQSITDGYESKL HDLSNQLKLKMHQIEQMMMEIDDKSRLLEQLKKLDEEHGGASSQEIQGLKTELEMLTIENNNLLKQAEHKESMSLELEQIKTSIKHTEALVQKGDMERDE LVGTISLLKKEAEKSLVELNRMRCLKDEKEAAMNVLQSEVGMLKAQCDNLKHSVFEDELEKEKLRKQLVQLKSELKKKEDALNSMEKKIKESSKRSAVSE GTKTNLRNNKSAPVPYGSKEVANLREKIKLLEGQIKLKETALEASASSFAEKERDLQNKIEELVSRLEELNQNSAIFCYNQPQKLSEDDIGVNSNGDVAE DYRNTDENPSSSYGTCKENGNSRLLIKSDHSTASEQEPKASCINNTDHNADKLLSELVTLKERNKTMENELKEMQERYSEISLKFAEVEGERQQLVMTLR NLKNARKS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G63300			Myosin heavy chain-related pro...		Potri.003G124600 [exp]	0	1
AT3G59110			Protein kinase superfamily pro...		Potri.002G059000 [exp]	1.41	0.9463
AT2G03200			Eukaryotic aspartyl protease f...		Potri.019G002100 [exp]	4.69	0.9387
AT3G16630		ATKINESIN-13A, ...	P-loop containing nucleoside t...		Potri.008G221400 [exp]	5.19	0.9168
AT1G79420			Protein of unknown function (D...		Potri.010G174200 [exp]	6.00	0.9256
AT5G55970			RING/U-box superfamily protein...		Potri.001G371200 [exp]	7.21	0.9302
AT5G43190			Galactose oxidase/kelch repeat...		Potri.002G118700 [exp]	9.38	0.9178
AT1G72220			RING/U-box superfamily protein...		Potri.002G101800 [exp]	12.00	0.9088
AT3G23090			TPX2 (targeting protein for Xk...		Potri.010G076200 [exp]	12.44	0.9267
AT2G35100		ARAD1	ARABINAN DEFICIENT 1, Exostosi...		Potri.015G124800 [exp]	13.41	0.8981
AT5G67210		IRX15-L	IRX15-LIKE, Protein of unknown...		Potri.005G141300 [exp]	14.00	0.9193

Compare expression of checked genes

Potri.003G124600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.