Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G41190 693 / 0 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001487 [exp] 745 / 0 AT5G41190 690 / 0.0 unknown protein Lus10008488 [exp] 744 / 0 AT5G41190 688 / 0.0 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0167 [poplar] [flax] Zn_Beta_Ribbon PF08772 [poplar] [flax] NOB1_Zn_bind Nin one binding (NOB1) Zn-ribbon like
Representative CDS sequence Show only first row Show all	>Potri.003G124700.1 pacid=42785182 polypeptide=Potri.003G124700.1.p locus=Potri.003G124700 ID=Potri.003G124700.1.v4.1 annot-version=v4.1 ATGGAGAATCCCTCACCCGCACCTCCATCAACTACTCAATGCTGGAGTAACATAGTAAAGAACCACCAACCATCACCACCGCCAGCACCATCACAGCAAC AGCAAGACCAGTTGTATGTGGAGAGTTGCAAGTCGACACACGGCATATCAGTGGCGGTTATTGATGCAAACGCCATCATACAGGGCGGAGAGAAGCTCAA CAACTTCGCCGACAAGTTCGTCACCGTCCCTGAAGTCCTCGCTGAGATTCGCGATCCTGTTTCTCGCCATCGACTTGCTTTCATTCCTTTCTCAATTGAT TGCAGGGAACCCTCCCCTGATTCCCTCAATAAAGTTATCAAGTTTGCGAGAGCAACAGGAGATTTACAGACCCTATCTGATGTTGATCTTAAACTCATTG CATTGACATATACATTGGAGACACAACTTCACGGGACTAAACATATTAGGGATGCGCCACCCCCTGTCCATACAGTCAATGTGAAGAGGCTGCCCGAAAA GGACATGCCAGGGTGGGGTTCTAATGTTCCTAATTTGGAAGAATGGGAAGCTTTGGAACAAGAAACTGGAGATGGGATAGATCCCAGCTCGAAAATTCTT CCTTTAAAAGACATAAGCTTGAACGTTATGCCTGCTGATGACCAATCTGAAGATGGTTCGACGGGGATTGGAGGGGAAGCAAATTCTGAGAATTTTGAAG ATGTTGAACATGGTTCGAGGAAGCCCAGGAGATTTCCACCCAAGAAAAAAGACATAAATCTTGAAGGGAAAAAGATGGTTGCTGGCGGAATTGATGCATC GCAGGGACAATTTGATGATAATGCTGGTGATTGGATGCCTGCTGTTAGTCGAAGTACTCATAGAAGATATCTTAGAAGAAAAGGTAGGCGTGAATTTAAT GAAGCATTATTAGAGAAAGATAGCCAGCAAGATCTAGAGAAAAGTATGGATGACAGCACTATTGAGGTAGCTAGTGTCCCAGATCAAGTGTTACATCAAA GTTTGATATCTGAGGAGAGTATGTTGACAGAGGTGAAGAACTGTGATGGTGATGTTTCCTTGATTTTAAAACAAATGAGACTGGAAGAAGGTTCACTGGA GGCTGCTCAAGGTGAGAAAGGAGAGAACAGTACCTCTGCAGAGACAGAGATTAACGATTCTAGGGACATGGAAGCTTCCTTAGATCACATTGAAAACATT GATGTTGAGACGAGAAGAGTTGATATTGCCAGTGCAGAATCAGATCACTTGGAGATCTCAAGCCAGATTCACGAAAGTGTTGATGCATCATATTCAGATG GTAATGATAGCGAGCAAAGCTGGATGGTCAGATCCTTATCTGAGTCTAGTGTAGCTTGTGTAACTAGTGACTTTGCAATGCAGAATGTACTTCTGCAAAT GGGCTTACGACTGCTGGCACCTGGAGGAAATCAAATCCGCCAGCTGCATAGGTGGATACTGAAATGCCATGCCTGCTATACTGTCACAGCTGAAATTGGG AGGATATTTTGTCCTAAGTGTGGAAATGGCGGCACTTTAAGAAAGGTTGCTGTAACAGTTGGTGAGAATGGAATTGTTTTGGCTGATCATAGGCCACGGA TTACTCTGCGTGGTACAAAATTTTCACTGCCTTCACCACAAGGTGGGAGGGATGCCATCACTAAGAATCTCATTCTGCGCGAGGATCAGCTACCACAAAA GTTCCTCTACCCTAAGACGAAGAAGAAAGTGAATAAGGAGGGAGATGACATCTTCTCGGTTCGGGATGACATCTTTGGCCACCATAATGATAAAAAAACT CCTTTCCGGCCTCCCATAAGGCAAGCATTAGCAGTTTTTAGTGGGAAAAGGAATCCAAATGACAATCACTATGCTCGTCCTAAGCACTGA
AA sequence Show only first row Show all	>Potri.003G124700.1 pacid=42785182 polypeptide=Potri.003G124700.1.p locus=Potri.003G124700 ID=Potri.003G124700.1.v4.1 annot-version=v4.1 MENPSPAPPSTTQCWSNIVKNHQPSPPPAPSQQQQDQLYVESCKSTHGISVAVIDANAIIQGGEKLNNFADKFVTVPEVLAEIRDPVSRHRLAFIPFSID CREPSPDSLNKVIKFARATGDLQTLSDVDLKLIALTYTLETQLHGTKHIRDAPPPVHTVNVKRLPEKDMPGWGSNVPNLEEWEALEQETGDGIDPSSKIL PLKDISLNVMPADDQSEDGSTGIGGEANSENFEDVEHGSRKPRRFPPKKKDINLEGKKMVAGGIDASQGQFDDNAGDWMPAVSRSTHRRYLRRKGRREFN EALLEKDSQQDLEKSMDDSTIEVASVPDQVLHQSLISEESMLTEVKNCDGDVSLILKQMRLEEGSLEAAQGEKGENSTSAETEINDSRDMEASLDHIENI DVETRRVDIASAESDHLEISSQIHESVDASYSDGNDSEQSWMVRSLSESSVACVTSDFAMQNVLLQMGLRLLAPGGNQIRQLHRWILKCHACYTVTAEIG RIFCPKCGNGGTLRKVAVTVGENGIVLADHRPRITLRGTKFSLPSPQGGRDAITKNLILREDQLPQKFLYPKTKKKVNKEGDDIFSVRDDIFGHHNDKKT PFRPPIRQALAVFSGKRNPNDNHYARPKH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G41190			unknown protein		Potri.003G124700 [exp]	0	1
AT4G07410		PCN	POPCORN, Transducin family pro...		Potri.014G014900 [exp]	1.41	0.9047
AT2G47420		DIM1A	adenosine dimethyl transferase...		Potri.014G121200 [exp]	3.16	0.8759
AT2G19540			Transducin family protein / WD...		Potri.007G094000 [exp]	3.46	0.8651
AT2G47990		SWA1, EDA13, ED...	SLOW WALKER1, EMBRYO SAC DEVEL...		Potri.014G135600 [exp]	4.24	0.8876
AT4G04940			transducin family protein / WD...		Potri.006G078900 [exp]	4.47	0.8841
AT2G18220			Noc2p family (.1)		Potri.001G012800 [exp]	4.69	0.8923
AT2G19640		SDG39, ASHR2	SET DOMAIN PROTEIN 39, ASH1-re...		Potri.001G071700 [exp]	5.09	0.8615
AT3G51270			protein serine/threonine kinas...		Potri.017G001100 [exp]	5.74	0.8665
AT4G28200			unknown protein		Potri.007G040000 [exp]	5.91	0.8745
AT3G19360	C3HZnF		Zinc finger (CCCH-type) family...		Potri.009G130600 [exp]	6.16	0.8409

Compare expression of checked genes

Potri.003G124700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.