Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G63430 857 / 0 Leucine-rich repeat protein kinase family protein (.1.2) AT5G41180 741 / 0 leucine-rich repeat transmembrane protein kinase family protein (.1) AT5G45840 276 / 4e-83 Leucine-rich repeat protein kinase family protein (.1.2) AT4G18640 258 / 2e-76 MRH1 morphogenesis of root hair 1, Leucine-rich repeat protein kinase family protein (.1) AT5G62710 200 / 1e-55 Leucine-rich repeat protein kinase family protein (.1) AT1G25320 201 / 2e-55 Leucine-rich repeat protein kinase family protein (.1) AT2G40270 196 / 3e-55 Protein kinase family protein (.1.2) AT5G58540 191 / 5e-55 Protein kinase superfamily protein (.1.2.3) AT1G31420 196 / 4e-54 FEI1 FEI 1, Leucine-rich repeat protein kinase family protein (.1.2) AT2G01210 197 / 5e-54 Leucine-rich repeat protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G106600 [exp] 1137 / 0 AT1G63430 839 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.011G067400 [exp] 302 / 2e-92 AT4G18640 678 / 0.0 morphogenesis of root hair 1, Leucine-rich repeat protein kinase family protein (.1) Potri.008G072100 [exp] 285 / 8e-87 AT2G40270 451 / 2e-153 Protein kinase family protein (.1.2) Potri.009G075400 [exp] 251 / 1e-73 AT2G40270 449 / 9e-152 Protein kinase family protein (.1.2) Potri.001G280200 [exp] 245 / 2e-71 AT2G40270 430 / 2e-144 Protein kinase family protein (.1.2) Potri.004G058100 [exp] 233 / 1e-66 AT4G18640 694 / 0.0 morphogenesis of root hair 1, Leucine-rich repeat protein kinase family protein (.1) Potri.010G185300 [exp] 217 / 1e-61 AT2G40270 434 / 1e-146 Protein kinase family protein (.1.2) Potri.010G120100 [exp] 211 / 1e-58 AT2G01210 1013 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.003G105000 [exp] 205 / 1e-57 AT1G31420 893 / 0.0 FEI 1, Leucine-rich repeat protein kinase family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008310 [exp] 936 / 0 AT1G63430 857 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10001489 [exp] 922 / 0 AT1G63430 879 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10008486 [exp] 921 / 0 AT1G63430 878 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10008018 [exp] 921 / 0 AT1G63430 846 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10017439 [exp] 314 / 3e-97 AT5G45840 457 / 1e-152 Leucine-rich repeat protein kinase family protein (.1.2) Lus10025400 [exp] 293 / 3e-89 AT5G45840 608 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10015277 [exp] 269 / 1e-80 AT5G45840 548 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10031290 [exp] 237 / 2e-68 AT4G18640 457 / 7e-153 morphogenesis of root hair 1, Leucine-rich repeat protein kinase family protein (.1) Lus10007516 [exp] 236 / 5e-68 AT5G45840 463 / 4e-155 Leucine-rich repeat protein kinase family protein (.1.2) Lus10031860 [exp] 232 / 6e-67 AT5G45840 491 / 4e-166 Leucine-rich repeat protein kinase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0016 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.003G124800.1 pacid=42786666 polypeptide=Potri.003G124800.1.p locus=Potri.003G124800 ID=Potri.003G124800.1.v4.1 annot-version=v4.1 ATGAGTTCTTCTGGGTCTTTGTTTTTTTCTTCCAACAAAGAGAGAGGAGTAGAGATTTCTTGCAGAGTACAAATGAGATCATATGCTTCCCTTCAGCTTC TTTCTTTTGTTTCTCTAGTTCTTGTCGTAACCTGTGACTCCTTTGTCAGAGAAGAAGTTTGGGCACTTACAACATTCAAGGAAGCTATATACGAAGACCC ACATATGGTTTTGTCCAATTGGAATGCCTTAGATGCAGATCCTTGTGGTTGGTCTGGCATTTCCTGCTCTTCTGCTCGAGACCATGTTGTAAAGATAAAC ATAACTGGGTACTCTTTAAGGGGATTTCTTGCCCCAGAATTGGGTCGGATCAAATTTTTGCAACAACTAATCTTGCACGGTAATAATCTGATTGGGGTTA TACCAAAAGAATTGGGAATGTTGAAATACCTCCAGGTCTTGGATTTGGGAGCAAATCAATTAACGGGTCCTATTCCTCCAGAGATTGCAAATCTAACCAG TGTCAGGAAAATAAACCTTCAGTCCAATGGGTTAACAGGAAGCTTGCCTCCTGAACTTGGCAATTTGAAGTACCTTCAAGAACTTTGGTTGGATAGGAAT AGGCTTCAAGGATCTGTTCCTGCTAGCAGTGGCTCAGATTTCACGTCTAGTGTGTATGGAATCTATGCTTCAAACACAAACTTAACTGGCCTGTGTCGAG CATCTGGATTAAAAGTGGCTGATTTCTCATACAATTTCTTTACTGGGAGCATTCCCAAGTGCTTGGGGTATCTTCCAAGCACGAGCTTCCAAGGGAACTG CCTTCAGAACAAAGATCCAAGACAGCGTTCTTCTTCTCTTTGTGATCGTGCTCCACATGCCAGAACCCATCAAACAAGAAGCCCCAAGCACCAGCCTGCT GAAGATGTATCCAAGCAGCACCAGAGGGCATCAAAACCTGCCTGGCTTTTGGCTCTGGAAATAGTGACAGGAACCATGGTGGGCTGTCTCTTTCTAATTG CCTTCCTAACTGCTCTTCAGAGATGCAATAACAAATCTTCTCTCATAATCCCTTTGAAGAAATTATCGAGTCAGAAGGACCATGTGACTGTATACATAGA TTCTGAGATGTTGAAAGATGTAGTGAGATTCAGCAGGCAGGAGCTTGAAGTGGCCTGTGAAGACTTCAGTAACATCATTGGCTCTTCTCCAGATAGTTTG GTTTACAAGGGCATCATGAAAGGTGGGCCTGAGATTGCAGTCATATCTCTCTGCATCAAAGAACAACAATGGACAGGCTATCTTGAACTCTATTTCCAAA GAGAGGTGGCAGATTTGGCAAGATTAAATAACGAGAATGCAGGAAAGTTACTGGGCTATTGTAAAGAGAGCACTCCGTTTACAAGGATGTTAGTTATTGA ATATGCATCGAATGGGACCCTGTATGAGCACCTTCACTATGGAGATGGATGCCAATTATCTTGGACACGCCGGATGAAAATTGTCACAGGCGTTGCTCGT GGATTGAAGTACCTTCATACTGAACTTGAGCCACCATTTACTATATCCGAGTTAAATTCCAGTTCCGTATATCTCACAGAGGAATTTTCCCCAAAGTTGG TTGATTTTGAAAGTTGGAAGAGTATTCTTGCAAGATCAGAGAAGAACTCAGGCTCCATAGGCAGCCAAGGTGCTATCTGTGTGCTTCCACATTCTCTGGA GGGACGCCATCTTGATGTCCAAGGGAACATTTATGCTTTTGGTGTTCTTTTACTGGAAATAATCAGTGGAAGACCTCCATACTGCAAGGACAAGGGGCGC TTGGTAGATTGGGCCAAGGACTTCTTAGAACTGCCAGAAGCAATGGCTTATGTGGTGGATCCCGAGTTGAAGCATTTCAGATTCGAAGACCTCAAAGTTA TATGTGAAGTGGTAAAACTTTGCATCCATCCAGACCCCACCAAGCAGCCTTCCATGCAGGAGTTAAGTGCCATTCTAGAGAGCGGAATTGATACAACTAT ATCTGCTGACCTCAAGGCATCTTCTTTGGCATGGGCAGAGCTTGCGCTGGCATCATAA
AA sequence Show only first row Show all	>Potri.003G124800.1 pacid=42786666 polypeptide=Potri.003G124800.1.p locus=Potri.003G124800 ID=Potri.003G124800.1.v4.1 annot-version=v4.1 MSSSGSLFFSSNKERGVEISCRVQMRSYASLQLLSFVSLVLVVTCDSFVREEVWALTTFKEAIYEDPHMVLSNWNALDADPCGWSGISCSSARDHVVKIN ITGYSLRGFLAPELGRIKFLQQLILHGNNLIGVIPKELGMLKYLQVLDLGANQLTGPIPPEIANLTSVRKINLQSNGLTGSLPPELGNLKYLQELWLDRN RLQGSVPASSGSDFTSSVYGIYASNTNLTGLCRASGLKVADFSYNFFTGSIPKCLGYLPSTSFQGNCLQNKDPRQRSSSLCDRAPHARTHQTRSPKHQPA EDVSKQHQRASKPAWLLALEIVTGTMVGCLFLIAFLTALQRCNNKSSLIIPLKKLSSQKDHVTVYIDSEMLKDVVRFSRQELEVACEDFSNIIGSSPDSL VYKGIMKGGPEIAVISLCIKEQQWTGYLELYFQREVADLARLNNENAGKLLGYCKESTPFTRMLVIEYASNGTLYEHLHYGDGCQLSWTRRMKIVTGVAR GLKYLHTELEPPFTISELNSSSVYLTEEFSPKLVDFESWKSILARSEKNSGSIGSQGAICVLPHSLEGRHLDVQGNIYAFGVLLLEIISGRPPYCKDKGR LVDWAKDFLELPEAMAYVVDPELKHFRFEDLKVICEVVKLCIHPDPTKQPSMQELSAILESGIDTTISADLKASSLAWAELALAS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G63430			Leucine-rich repeat protein ki...		Potri.003G124800 [exp]	0	1
AT1G67510			Leucine-rich repeat protein ki...		Potri.010G058200 [exp]	1.41	0.9461
AT5G45290			RING/U-box superfamily protein...		Potri.003G106600 [exp]	1.41	0.9489
AT5G54670		KATC, ATK3	KINESIN-LIKE PROTEIN IN ARABID...		Potri.011G131900 [exp]	2.00	0.9412	ATK2.1
AT2G22125		POM2, CSI1	POM-POM 2, cellulose synthase-...		Potri.007G087200 [exp]	3.46	0.9316
AT1G16860			Ubiquitin-specific protease fa...		Potri.008G006000 [exp]	4.89	0.9425
AT2G21300			ATP binding microtubule motor ...		Potri.004G162800 [exp]	5.19	0.9200
AT2G44740		CYCP4;1	cyclin p4;1 (.1)		Potri.012G114600 [exp]	5.47	0.9336
AT5G58300			Leucine-rich repeat protein ki...		Potri.013G158800 [exp]	6.16	0.9249
AT1G27170			transmembrane receptors;ATP bi...		Potri.012G053200 [exp]	6.32	0.9241
AT5G51540			Zincin-like metalloproteases f...		Potri.015G129300 [exp]	6.48	0.9374

Compare expression of checked genes

Potri.003G124800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.