Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G63410 163 / 5e-51 Protein of unknown function (DUF567) (.1) AT1G53870 137 / 1e-40 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) AT1G53890 137 / 1e-40 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2), Protein of unknown function (DUF567) (.3) AT3G14260 137 / 2e-40 Protein of unknown function (DUF567) (.1) AT1G53880 120 / 6e-32 Eukaryotic translation initiation factor 2B (eIF-2B) family protein (.1) AT1G53900 120 / 6e-32 Eukaryotic translation initiation factor 2B (eIF-2B) family protein (.1) AT5G41590 81 / 9e-19 Protein of unknown function (DUF567) (.1) AT3G15810 72 / 2e-15 Protein of unknown function (DUF567) (.1) AT1G80120 68 / 4e-14 Protein of unknown function (DUF567) (.1) AT2G38640 67 / 9e-14 Protein of unknown function (DUF567) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G106400 [exp] 336 / 3e-119 AT1G63410 178 / 1e-56 Protein of unknown function (DUF567) (.1) Potri.003G125300 [exp] 194 / 5e-63 AT3G14260 137 / 3e-40 Protein of unknown function (DUF567) (.1) Potri.001G106300 [exp] 188 / 6e-61 AT1G63410 132 / 8e-39 Protein of unknown function (DUF567) (.1) Potri.003G072200 [exp] 181 / 3e-58 AT3G14260 173 / 2e-54 Protein of unknown function (DUF567) (.1) Potri.006G113400 [exp] 87 / 3e-21 AT2G38640 214 / 5e-71 Protein of unknown function (DUF567) (.1) Potri.003G133200 [exp] 79 / 5e-18 AT5G41590 207 / 1e-67 Protein of unknown function (DUF567) (.1) Potri.016G143000 [exp] 79 / 5e-18 AT2G38640 214 / 1e-70 Protein of unknown function (DUF567) (.1) Potri.003G032500 [exp] 77 / 3e-17 AT3G15810 264 / 2e-90 Protein of unknown function (DUF567) (.1) Potri.001G098400 [exp] 69 / 4e-14 AT5G41590 201 / 3e-65 Protein of unknown function (DUF567) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001484 [exp] 134 / 2e-39 AT3G14260 137 / 5e-40 Protein of unknown function (DUF567) (.1) Lus10008485 [exp] 134 / 3e-39 AT3G14260 132 / 4e-38 Protein of unknown function (DUF567) (.1) Lus10007423 [exp] 78 / 1e-17 AT2G38640 187 / 4e-60 Protein of unknown function (DUF567) (.1) Lus10010681 [exp] 76 / 4e-17 AT2G38640 184 / 6e-59 Protein of unknown function (DUF567) (.1) Lus10028756 [exp] 75 / 3e-16 AT5G41590 194 / 7e-62 Protein of unknown function (DUF567) (.1) Lus10016666 [exp] 72 / 2e-15 AT3G15810 265 / 5e-90 Protein of unknown function (DUF567) (.1) Lus10017526 [exp] 71 / 1e-14 AT5G41590 194 / 4e-62 Protein of unknown function (DUF567) (.1) Lus10038097 [exp] 54 / 1e-08 AT3G15810 216 / 8e-71 Protein of unknown function (DUF567) (.1) Lus10032602 [exp] 52 / 3e-08 AT3G15810 211 / 5e-69 Protein of unknown function (DUF567) (.1) Lus10014021 [exp] 44 / 3e-05 AT5G01750 202 / 6e-66 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0395 [poplar] [flax] Tubby_C PF04525 [poplar] [flax] LOR LURP-one-related
Representative CDS sequence Show only first row Show all	>Potri.003G125200.1 pacid=42787173 polypeptide=Potri.003G125200.1.p locus=Potri.003G125200 ID=Potri.003G125200.1.v4.1 annot-version=v4.1 ATGGCTAAAGTGTTTCCTCACAGTCAGAGACCTGTGTTAGACCCTTTCGTGTCTTTAGAAAAAGAAACATTCACTATATGGATGAAATCACTTGTGTGCC AAACTAATGGCTGCACCGTCTTTGATTCCAATGGAGACATTGTTTATCGCATCGACAACTATGACAAGAAGTGCAGCAGTAAGGTCTATCTTATGGATCT TCGAGGCAGAGTTCTTGTTACAATTATACGAAGAAAGAGGTTATTACAGATTGTAGGGTGCTGGTATGGTTATAGATGGAATCCTGATGCCAACGAGGAG AAGCCATGGTTTCAAGTGAAAACATATGGCAGACTTATCTGTATGGGAAGCTTTGCCTGTCAAGTTACTGTAGGGTTTGACAAGTATTGGGTGGTGAAAT TGGGCAGCAAACAGGCATTTAGAATCGTGAACATTGATAGAGAGGTTATTGCAGAGGTGAAGCAAAAACAATTATCTTCAGGAATCTCACTGGGGGATGA TGTGCTAACTTTGGTTGTGGAGCCTCACATAGATCATTCCCTGATAATGGCAATTGTGACTGTCTATGGGTTGATCAATTATAAACTGTAG
AA sequence Show only first row Show all	>Potri.003G125200.1 pacid=42787173 polypeptide=Potri.003G125200.1.p locus=Potri.003G125200 ID=Potri.003G125200.1.v4.1 annot-version=v4.1 MAKVFPHSQRPVLDPFVSLEKETFTIWMKSLVCQTNGCTVFDSNGDIVYRIDNYDKKCSSKVYLMDLRGRVLVTIIRRKRLLQIVGCWYGYRWNPDANEE KPWFQVKTYGRLICMGSFACQVTVGFDKYWVVKLGSKQAFRIVNIDREVIAEVKQKQLSSGISLGDDVLTLVVEPHIDHSLIMAIVTVYGLINYKL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G63410			Protein of unknown function (D...		Potri.003G125200 [exp]	0	1
AT1G73325			Kunitz family trypsin and prot...		Potri.010G007700 [exp]	13.82	0.7829
AT1G17860			Kunitz family trypsin and prot...		Potri.010G007922 [exp]	15.96	0.7594
AT1G17860			Kunitz family trypsin and prot...		Potri.010G007900 [exp]	21.90	0.7590
AT1G17860			Kunitz family trypsin and prot...		Potri.010G010111 [exp]	25.74	0.7686
AT1G17860			Kunitz family trypsin and prot...		Potri.010G007822 [exp]	28.21	0.7669
AT1G17860			Kunitz family trypsin and prot...		Potri.010G007800 [exp]	39.24	0.7587
AT5G67050			alpha/beta-Hydrolases superfam...		Potri.007G044500 [exp]	42.00	0.7478
AT4G11280		ATACS6, ACS6	1-aminocyclopropane-1-carboxyl...		Potri.003G132300 [exp]	45.47	0.7547	Pt-ACS2.2
AT1G17860			Kunitz family trypsin and prot...		Potri.010G007911 [exp]	46.57	0.7557
AT2G19080			metaxin-related (.1)		Potri.001G065336 [exp]	53.32	0.7537

Compare expression of checked genes

Potri.003G125200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.