Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G23860 857 / 0 TUB8, b-TUB tubulin beta 8 (.1.2) AT5G62700 849 / 0 atgcp3, TUB3 tubulin beta chain 3 (.1) AT5G62690 849 / 0 TUB2 tubulin beta chain 2 (.1) AT2G29550 843 / 0 TUB7 tubulin beta-7 chain (.1) AT5G12250 840 / 0 TUB6 beta-6 tubulin (.1) AT1G75780 828 / 0 TUB1 tubulin beta-1 chain (.1) AT1G20010 821 / 0 TUB5 tubulin beta-5 chain (.1) AT4G20890 819 / 0 TUB9 tubulin beta-9 chain (.1) AT5G44340 814 / 0 TUB4 tubulin beta chain 4 (.1) AT5G19780 367 / 6e-124 TUA5 tubulin alpha-5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G106100 [exp] 863 / 0 AT5G23860 858 / 0.0 tubulin beta 8 (.1.2) Potri.009G040200 [exp] 857 / 0 AT5G23860 864 / 0.0 tubulin beta 8 (.1.2) Potri.001G246900 [exp] 856 / 0 AT5G62700 858 / 0.0 tubulin beta chain 3 (.1) Potri.001G272700 [exp] 847 / 0 AT5G62700 849 / 0.0 tubulin beta chain 3 (.1) Potri.006G095000 [exp] 845 / 0 AT5G23860 852 / 0.0 tubulin beta 8 (.1.2) Potri.001G272800 [exp] 844 / 0 AT5G62700 857 / 0.0 tubulin beta chain 3 (.1) Potri.006G035400 [exp] 843 / 0 AT5G12250 860 / 0.0 beta-6 tubulin (.1) Potri.016G033200 [exp] 843 / 0 AT5G12250 862 / 0.0 beta-6 tubulin (.1) Potri.009G067100 [exp] 840 / 0 AT5G12250 852 / 0.0 beta-6 tubulin (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039231 [exp] 855 / 0 AT5G23860 912 / 0.0 tubulin beta 8 (.1.2) Lus10027476 [exp] 855 / 0 AT5G23860 912 / 0.0 tubulin beta 8 (.1.2) Lus10040712 [exp] 854 / 0 AT5G23860 923 / 0.0 tubulin beta 8 (.1.2) Lus10016448 [exp] 854 / 0 AT5G23860 921 / 0.0 tubulin beta 8 (.1.2) Lus10036069 [exp] 840 / 0 AT5G12250 914 / 0.0 beta-6 tubulin (.1) Lus10026813 [exp] 839 / 0 AT5G12250 867 / 0.0 beta-6 tubulin (.1) Lus10038458 [exp] 835 / 0 AT2G29550 850 / 0.0 tubulin beta-7 chain (.1) Lus10023348 [exp] 835 / 0 AT2G29550 850 / 0.0 tubulin beta-7 chain (.1) Lus10021094 [exp] 825 / 0 AT1G75780 857 / 0.0 tubulin beta-1 chain (.1) Lus10017217 [exp] 822 / 0 AT1G75780 854 / 0.0 tubulin beta-1 chain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0566 [poplar] [flax] Tubulin PF00091 [poplar] [flax] Tubulin Tubulin/FtsZ family, GTPase domain CL0442 [poplar] [flax] Tubulin_C PF03953 [poplar] [flax] Tubulin_C Tubulin C-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.003G125400.1 pacid=42785117 polypeptide=Potri.003G125400.1.p locus=Potri.003G125400 ID=Potri.003G125400.1.v4.1 annot-version=v4.1 ATGAGAGAAATCCTTCACATCCAAGGAGGCCAATGCGGCAACCAAATAGGAGCAAAGTTTTGGGAAGTAGTATGTGCAGAACACGGGATTGACTCAACCG GTCGGTATCATGGTGACTCGGCTCTCCAACTCGAGCGAGTTAATGTTTACTATAATGAAGCCAGCTGTGGAAGGTTTGTCCCTCGTGCTGTTTTAATGGA TCTTGAACCGGGTACTATGGATAGTGTTAGATCCGGTCCTTATGGACAGATTTTTAGACCGGATAATTTTGTGTTTGGCCAATCTGGTGCTGGTAACAAC TGGGCTAAAGGGCATTATACGGAGGGCGCGGAGTTGATTGATTCTGTTCTTGATGTTGTTAGGAAGGAGGCTGAGAACTGTGACTGCTTGCAAGGATTTC AGGTATGCCACTCACTGGGGGGTGGCACAGGGTCTGGAATGGGAACACTCTTGATCTCGAAAATAAGAGAGGAATACCCAGATCGAATGATGCTAACATT CTCTGTCTTCCCATCTCCAAAGGTCTCAGACACTGTCGTTGAGCCTTACAATGCAACTCTCTCTGTTCACCAGCTTGTTGAGAATGCTGATGAGTGTATG GTTCTTGATAATGAGGCTCTTTATGATATCTGCTTCCGTACTCTCAAGCTCACAACTCCCAGCTTTGGGGATCTGAACCACCTGATTTCAGCCACCATGA GTGGTGTTACATGCTGCCTTCGTTTCCCTGGTCAGCTCAATTCAGACCTTCGCAAACTTGCTGTGAACCTCATCCCATTCCCCCGTCTTCACTTTTTCAT GGTTGGCTTTGCACCTCTCACATCCCGTGGCTCACAGCAATACCGTGCCCTAACTGTACCTGAACTCACCCAACAAATGTGGGATGCCAAGAATATGATG TGTGCTGCTGATCCTCGCCATGGCAGATATCTCACAGCCTCTGCGATGTTTCGTGGCAAAATGAGCACGAAGGAAGTTGATGAGCAGATGATCAACGTTC AAAACAAGAACTCATCCTACTTTGTTGAATGGATCCCCAACAACGTCAAGTCCACTGTCTGTGACATTCCTCCTACAGGCTTGACAATGGCTTCCACTTT CATTGGCAACTCAACATCAATCCAAGAGATGTTCAGAAGAGTTAGTGAGCAGTTCACTGCCATGTTCCGCAGGAAGGCTTTCTTGCATTGGTACACTGGA GAGGGAATGGATGAGATGGAATTTACAGAGGCTGAGAGCAACATGAATGATTTGGTCTCAGAGTACCAGCAATACCAGGACGCAACTGCTGATGAGGAAG GCGAGTATGAAGATGAGGAAGCATACCAGGACGAGGATTAA
AA sequence Show only first row Show all	>Potri.003G125400.1 pacid=42785117 polypeptide=Potri.003G125400.1.p locus=Potri.003G125400 ID=Potri.003G125400.1.v4.1 annot-version=v4.1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYHGDSALQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNN WAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECM VLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMM CAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSTVCDIPPTGLTMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTG EGMDEMEFTEAESNMNDLVSEYQQYQDATADEEGEYEDEEAYQDED

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G23860		TUB8, b-TUB	tubulin beta 8 (.1.2)		Potri.003G125400 [exp]	0	1
AT1G77690		LAX3	like AUX1 3 (.1)		Potri.002G087000 [exp]	1.41	0.9506	PtrAUX8
AT3G43190		ATSUS4, SUS4	ARABIDOPSIS THALIANA SUCROSE S...		Potri.018G063500 [exp]	1.73	0.9512	PtrSuSY1,Pt-SUS1.2
AT2G30890			Cytochrome b561/ferric reducta...		Potri.005G204300 [exp]	1.73	0.9374
AT3G03280			unknown protein		Potri.004G094000 [exp]	3.60	0.9197
AT1G29240			Protein of unknown function (D...		Potri.011G067000 [exp]	5.65	0.9275
AT3G54950		pPLAIIIbeta, PL...	patatin-related phospholipase ...		Potri.015G122700 [exp]	8.94	0.9266
AT4G20050		QRT3	QUARTET 3, Pectin lyase-like s...		Potri.003G074600 [exp]	12.40	0.9186	QRT3.2
AT1G22760		PAB3	poly(A) binding protein 3 (.1)		Potri.005G198500 [exp]	13.22	0.8958
AT3G57040		ATRR4, ARR9	RESPONSE REGULATOR 4, response...		Potri.002G082200 [exp]	15.39	0.8779
AT1G35620		ATPDI8, ATPDIL5...	ARABIDOPSIS THALIANA PROTEIN D...		Potri.013G111400 [exp]	16.24	0.8820

Compare expression of checked genes

Potri.003G125400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.