Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-HMA5.3
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G63440 1528 / 0 HMA5 heavy metal atpase 5 (.1) AT5G44790 871 / 0 HMA7, RAN1 copper-exporting ATPase / responsive-to-antagonist 1 / copper-transporting ATPase (RAN1) (.1) AT4G33520 362 / 1e-109 AtHMAC6, HMA6, PAA1 Arabidopsis thaliana heavy metal ATPase 6, P-type ATP-ase 1 (.1.2.3) AT5G21930 358 / 6e-109 ATHMA8, HMA8, PAA2 ARABIDOPSIS HEAVY METAL ATPASE 8, P-type ATPase of Arabidopsis 2 (.1.2.3) AT4G30110 266 / 8e-75 ATHMA2, HMA2 ARABIDOPSIS HEAVY METAL ATPASE 2, heavy metal atpase 2 (.1) AT2G19110 248 / 8e-68 ATHMA4, HMA4 ARABIDOPSIS HEAVY METAL ATPASE 4, heavy metal atpase 4 (.1) AT4G30120 176 / 1e-46 ATHMA3, HMA3 A. THALIANA HEAVY METAL ATPASE 3, heavy metal atpase 3 (.1) AT4G37270 160 / 3e-40 ATHMA1, HMA1 ARABIDOPSIS THALIANA HEAVY METAL ATPASE 1, heavy metal atpase 1 (.1) AT2G41560 122 / 4e-28 ACA4 "autoinhibited Ca\(2+\)-ATPase, isoform 4", autoinhibited Ca(2+)-ATPase, isoform 4 (.1) AT3G57330 120 / 2e-27 ACA11 autoinhibited Ca2+-ATPase 11, autoinhibited Ca2+-ATPase 11 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G105800 [exp] 1842 / 0 AT1G63440 1538 / 0.0 heavy metal atpase 5 (.1) Potri.003G125700 [exp] 1580 / 0 AT1G63440 1395 / 0.0 heavy metal atpase 5 (.1) Potri.001G019100 [exp] 1052 / 0 AT1G63440 1043 / 0.0 heavy metal atpase 5 (.1) Potri.001G158900 [exp] 888 / 0 AT5G44790 1465 / 0.0 copper-exporting ATPase / responsive-to-antagonist 1 / copper-transporting ATPase (RAN1) (.1) Potri.003G075700 [exp] 878 / 0 AT5G44790 1526 / 0.0 copper-exporting ATPase / responsive-to-antagonist 1 / copper-transporting ATPase (RAN1) (.1) Potri.003G024000 [exp] 378 / 2e-115 AT4G33520 1078 / 0.0 Arabidopsis thaliana heavy metal ATPase 6, P-type ATP-ase 1 (.1.2.3) Potri.001G205400 [exp] 366 / 3e-111 AT4G33520 1066 / 0.0 Arabidopsis thaliana heavy metal ATPase 6, P-type ATP-ase 1 (.1.2.3) Potri.018G047800 [exp] 362 / 2e-109 AT5G21930 1193 / 0.0 ARABIDOPSIS HEAVY METAL ATPASE 8, P-type ATPase of Arabidopsis 2 (.1.2.3) Potri.006G076900 [exp] 268 / 1e-74 AT4G30110 1051 / 0.0 ARABIDOPSIS HEAVY METAL ATPASE 2, heavy metal atpase 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008309 [exp] 1621 / 0 AT1G63440 1491 / 0.0 heavy metal atpase 5 (.1) Lus10031273 [exp] 1025 / 0 AT1G63440 1040 / 0.0 heavy metal atpase 5 (.1) Lus10036225 [exp] 843 / 0 AT5G44790 1402 / 0.0 copper-exporting ATPase / responsive-to-antagonist 1 / copper-transporting ATPase (RAN1) (.1) Lus10038364 [exp] 834 / 0 AT5G44790 1441 / 0.0 copper-exporting ATPase / responsive-to-antagonist 1 / copper-transporting ATPase (RAN1) (.1) Lus10031840 [exp] 548 / 0 AT5G44790 573 / 0.0 copper-exporting ATPase / responsive-to-antagonist 1 / copper-transporting ATPase (RAN1) (.1) Lus10023777 [exp] 365 / 8e-111 AT4G33520 1180 / 0.0 Arabidopsis thaliana heavy metal ATPase 6, P-type ATP-ase 1 (.1.2.3) Lus10025467 [exp] 271 / 1e-76 AT4G30110 1073 / 0.0 ARABIDOPSIS HEAVY METAL ATPASE 2, heavy metal atpase 2 (.1) Lus10006955 [exp] 267 / 5e-75 AT2G19110 1072 / 0.0 ARABIDOPSIS HEAVY METAL ATPASE 4, heavy metal atpase 4 (.1) Lus10038070 [exp] 247 / 1e-68 AT5G21930 1146 / 0.0 ARABIDOPSIS HEAVY METAL ATPASE 8, P-type ATPase of Arabidopsis 2 (.1.2.3) Lus10011510 [exp] 172 / 2e-44 AT4G37270 1000 / 0.0 ARABIDOPSIS THALIANA HEAVY METAL ATPASE 1, heavy metal atpase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00122 [poplar] [flax] E1-E2_ATPase E1-E2 ATPase PF00403 [poplar] [flax] HMA Heavy-metal-associated domain CL0137 [poplar] [flax] HAD PF12710 [poplar] [flax] HAD haloacid dehalogenase-like hydrolase
Representative CDS sequence Show only first row Show all	>Potri.003G125600.1 pacid=42785327 polypeptide=Potri.003G125600.1.p locus=Potri.003G125600 ID=Potri.003G125600.1.v4.1 annot-version=v4.1 ATGGCAACCAAATTCTTGGCATTAGCATGCATTCGCAAAGAGAGTACCTATGGGGATTTATCACCAAGGCCAAGGTATCCTTCGATGCCGAAGTACCCGA AAGGGGTTTCAGTTCGAGAAACGAACGTGGAAGGATCAGAGGCAAAGGCAGTGTTTTCTGTGATGGGAATGACATGTTCTGCTTGTGCTGGATCTGTTGA GAAAGCTGTCAAGAGGCTTCCTGGGATTAGAGAGGCTGTTGTTGATGTCTTGAATAACAAGGCTCAAGTTCTGTTCTACCCCAGTTTCGTTAACGAAGAG ACCATTCGTGAGACTATTGAAGATGCTGGATTTGAGGCTACATTGATTCAAGAAGGGACCAGTGATAGATCCACTCAAGTATGCCGAATTCGTATTAATG GAATGACTTGCACTTCTTGCTCCTCTACTGTTGAACAAGCTTTGCAAGCAATTCCAGGTGTGCAGAAAGCTCAAGTAGCCTTAGCAACTGAAGAAGCAGA AGTTCATTATGATCCAAATATCCTGAGCTACAATCAGATATTAGAAGCAATAAACGATACAGGATTTGAAGCCATACTACTTAGTACTGGCGTAGACATG AGCAAGATAGGGCTCAAAATTGTTGGAGTAAGAACACAGAATTCAATGAGAATAATTGAAAATTCTCTTCAAGCTCTCCCTGGTGTTCAAAGTGTAGACA TAGATCCTGAAGTCAACAAAATTTCCCTTTCTTACAAACCGGATGTAACTGGTCCCAGAAATTTTATCAATGTGATTGAATCAACTGGGACGTCAGGGCG ATTCAAGGCAACGATATTTCCTGAAGGAGGAGGAAGAGAAAGCCATAGACAAGAGGAAATTAAACAATATTACCGATCTTTCCTATGGAGTTTGGTTTTC ACAGTTCCAGTGTTTTTAATATCCATGATTTTTATGTACATTCCTGGAATTAAGCATGCATTAGACACCAAAATAGTCAATATGCTGTCTATAGGAGCAA TCTTGAGGTGGGTGCTATCTACTCCAGTTCAGTTCATCATAGGCCGTCGATTTTATACAGGTTCTTATAAAGCTTTGAGGAACGGTTCTCCTAACATGGA TGTGTTGATCGCCTTAGGAACAAATGCAGCCTACTTTTATTCAGTCTATTCGGTGTTGAGATCCGCTACCTCTCCAAGTTTTGAGTCCGCAGATTTCTTT GAGACTAGCTCAATGCTTATCTCATTCATTCTTCTCGGGAAGTATCTTGAGGTTCTGGCTAAGGGAAAGACATCCGAAGCCATTGCCAAGCTTATGGACT TGGCACCAGGCACTGCAATATTGTTGACTTTGGATGATCAAGGAAATGTGAGCAGCGAAGAAGAAATTGATAGTCGGTTGATACAAAGGAATGATGTGAT TAAAATCATACCTGGTGCCAAAATAGCTTCAGATGGTTTTGTTATTTGGGGGCAGAGTCACGTGAATGAGAGCATGATAACAGGAGAAGCACGGCCAGTT GCAAAGAGGAAAGGTGACACAGTGATTGGAGGGACTGTGAATGAGAATGGGGTGTTGCATATTAAGGCAACGAGGGTTGGATCGGAGAGTGCTCTTTCAC AGATTGTTCGACTTGTTGAGTCAGCTCAGATGGCTAAAGCTCCTGTCCAGAAGTTTGCTGATCGTATCTCCAGATACTTTGTTCCTCTTGTCATTATTCT TTCCTTTTCAACCTGGCTTGCGTGGTTTTTAGCTGGAAAGTTCCATGGATATCCAGGCTCTTGGATACCAAAGTCCATGGATAGCTTTCAGCTTGCTCTC CAATTCGGAATCTCTGTTATGGTCATAGCCTGCCCTTGCGCTCTTGGATTAGCAACTCCAACTGCTGTCATGGTTGGTACTGGAGTCGGTGCATCTCAAG GTGTTCTAATCAAAGGTGGCCAAGCATTAGAAAGTGCACATAAGGTGAATTGCATTGTCTTTGACAAGACAGGAACTCTTACGATTGGAAAGCCTTTGGT TGTTAGCACAAGACTCTTGAAAAATTTGGCACTGAGGGATTTTTATGAGCTCGTAGCTGCAGCTGAGGTGAACAGTGAGCACCCATTGGCCAAGGCCATT GTAGAGTATGCCAAGAAATTCAGAGAAGATGAAGAGAGCCCTAAGTGGCCAGAAGCACAAGATTTTGAGTCCATTACCGGACACGGAGTGAAGGCTATCG TCAGAAACAAGGAAGTGATAGTGGGAAATAAGAGTTTGATGTTGGAAAACAACATCCCCATTTCAATTGACGCAGAAGAGATCCTCGCAGAAACTGAAGG GATGGCTCAAACTGGGATTTTAGTATCTATTGATAGGGAAGTGACTGGAGTTCTAGCAATATCAGATCCATTGAAACCGGGTGCTCATGAAGTCATTTCC ATTCTCAAGTCCATGAAAGTTAGGAGCATCATGGTGACAGGTGACAACTGGGGAACTGCACATTCCATTGCCAGGGAAGTTGGGATTGAAACTGTTATTG CAGAAGCTAAGCCTGAGCATAAAGCTGAGAAAGTGAAGGAATTACAGGCTGCAGGCTATATAGTGGCAATGGTAGGTGATGGTATAAATGATTCACCAGC ACTTGTAGTCGCAGATGTTGGTATGGCAATTGGTGCAGGCACAGATATTGCTATAGAGGCAGCTGATATAGTTCTAATGAAGAGTAACCTGGAGGATGTG ATTACTGCCATAGACCTCTCCCGGAAAACCTTCTTCCGAATTCGCCTGAACTACATTTGGGCTTTGGGCTATAACCTCCTGGGCATTCCAATAGCTGCCG GGGCCCTTTTTCCAGGCACTGGATTTCGCTTACCACCCTGGATTGCTGGAGCTGCAATGGCAGCCTCTTCAGTCAGCGTTGTTGTGTGCTCACTCTTGTT GAAGAATTATAAAAGGCCCAAGAAGCTGGAAAATCTAGATATCGGTGGAATAATGATCGAGTGA
AA sequence Show only first row Show all	>Potri.003G125600.1 pacid=42785327 polypeptide=Potri.003G125600.1.p locus=Potri.003G125600 ID=Potri.003G125600.1.v4.1 annot-version=v4.1 MATKFLALACIRKESTYGDLSPRPRYPSMPKYPKGVSVRETNVEGSEAKAVFSVMGMTCSACAGSVEKAVKRLPGIREAVVDVLNNKAQVLFYPSFVNEE TIRETIEDAGFEATLIQEGTSDRSTQVCRIRINGMTCTSCSSTVEQALQAIPGVQKAQVALATEEAEVHYDPNILSYNQILEAINDTGFEAILLSTGVDM SKIGLKIVGVRTQNSMRIIENSLQALPGVQSVDIDPEVNKISLSYKPDVTGPRNFINVIESTGTSGRFKATIFPEGGGRESHRQEEIKQYYRSFLWSLVF TVPVFLISMIFMYIPGIKHALDTKIVNMLSIGAILRWVLSTPVQFIIGRRFYTGSYKALRNGSPNMDVLIALGTNAAYFYSVYSVLRSATSPSFESADFF ETSSMLISFILLGKYLEVLAKGKTSEAIAKLMDLAPGTAILLTLDDQGNVSSEEEIDSRLIQRNDVIKIIPGAKIASDGFVIWGQSHVNESMITGEARPV AKRKGDTVIGGTVNENGVLHIKATRVGSESALSQIVRLVESAQMAKAPVQKFADRISRYFVPLVIILSFSTWLAWFLAGKFHGYPGSWIPKSMDSFQLAL QFGISVMVIACPCALGLATPTAVMVGTGVGASQGVLIKGGQALESAHKVNCIVFDKTGTLTIGKPLVVSTRLLKNLALRDFYELVAAAEVNSEHPLAKAI VEYAKKFREDEESPKWPEAQDFESITGHGVKAIVRNKEVIVGNKSLMLENNIPISIDAEEILAETEGMAQTGILVSIDREVTGVLAISDPLKPGAHEVIS ILKSMKVRSIMVTGDNWGTAHSIAREVGIETVIAEAKPEHKAEKVKELQAAGYIVAMVGDGINDSPALVVADVGMAIGAGTDIAIEAADIVLMKSNLEDV ITAIDLSRKTFFRIRLNYIWALGYNLLGIPIAAGALFPGTGFRLPPWIAGAAMAASSVSVVVCSLLLKNYKRPKKLENLDIGGIMIE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G63440		HMA5	heavy metal atpase 5 (.1)		Potri.003G125600 [exp]	0	1	Pt-HMA5.3
AT3G01190			Peroxidase superfamily protein...		Potri.004G023100 [exp]	2.44	0.9721
AT2G20030			RING/U-box superfamily protein...		Potri.006G239500 [exp]	5.74	0.9585
AT5G36110		CYP716A1	"cytochrome P450, family 716, ...		Potri.001G002800 [exp]	6.32	0.9563	CYP716D1
AT1G14040			EXS (ERD1/XPR1/SYG1) family pr...		Potri.010G164900 [exp]	6.92	0.9505
AT1G52790			2-oxoglutarate (2OG) and Fe(II...		Potri.001G176000 [exp]	7.48	0.9582	2OGox10
AT1G66120			AMP-dependent synthetase and l...		Potri.016G034800 [exp]	8.24	0.9590
AT2G39380		ATEXO70H2	exocyst subunit exo70 family p...		Potri.008G048700 [exp]	8.36	0.9525
AT1G08090		LIN1, ACH1, NRT...	LATERAL ROOT INITIATION 1, nit...		Potri.009G008600 [exp]	8.36	0.9476	1,Pt-NRT2.6
AT5G06200		CASP4	Casparian strip membrane domai...		Potri.006G208800 [exp]	10.39	0.9496
AT5G44440			FAD-binding Berberine family p...		Potri.001G461800 [exp]	14.14	0.8983

Compare expression of checked genes

Potri.003G125600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.