Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	ATGSTT1.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G41210 327 / 3e-114 GSTU12, GST10, ATGSTT1 glutathione S-transferase THETA 1 (.1) AT5G41240 324 / 2e-108 GST10B, ATGSTT2 glutathione S-transferase THETA 2 (.1) AT5G41220 318 / 3e-106 GST10C, ATGSTT3 glutathione S-transferase THETA 3 (.1) AT2G30870 78 / 3e-17 ERD13, ATGSTF4, ATGSTF10 EARLY DEHYDRATION-INDUCED 13, ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE PHI 10, glutathione S-transferase PHI 10 (.1) AT2G30860 75 / 4e-16 GLUTTR, ATGSTF7, ATGSTF9 glutathione S-transferase PHI 9 (.1.2) AT1G49860 66 / 6e-13 ATGSTF14 glutathione S-transferase (class phi) 14 (.1) AT2G02380 63 / 9e-12 ATGSTZ2 glutathione S-transferase (class zeta) 2 (.1) AT2G02390 61 / 4e-11 GST18, ATGSTZ1 GLUTATHIONE S-TRANSFERASE 18, glutathione S-transferase zeta 1 (.1.2.3) AT2G02930 57 / 1e-09 GST16, ATGSTF3 GLUTATHIONE S-TRANSFERASE 16, glutathione S-transferase F3 (.1) AT1G02930 54 / 7e-09 ATGST1, GST1, ERD11, ATGSTF3, ATGSTF6 EARLY RESPONSIVE TO DEHYDRATION 11, ARABIDOPSIS THALIANA GLUATIONE S-TRANSFERASE F3, ARABIDOPSIS GLUTATHIONE S-TRANSFERASE 1, glutathione S-transferase 6 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G105600 [exp] 367 / 4e-130 AT5G41210 358 / 1e-126 glutathione S-transferase THETA 1 (.1) Potri.004G232600 [exp] 70 / 2e-14 AT2G02390 306 / 2e-106 GLUTATHIONE S-TRANSFERASE 18, glutathione S-transferase zeta 1 (.1.2.3) Potri.002G207286 [exp] 54 / 1e-08 AT1G02930 263 / 4e-90 EARLY RESPONSIVE TO DEHYDRATION 11, ARABIDOPSIS THALIANA GLUATIONE S-TRANSFERASE F3, ARABIDOPSIS GLUTATHIONE S-TRANSFERASE 1, glutathione S-transferase 6 (.1.2) Potri.002G207672 [exp] 54 / 1e-08 AT3G62760 302 / 2e-105 Glutathione S-transferase family protein (.1) Potri.017G138800 [exp] 54 / 1e-08 AT5G17220 265 / 1e-90 TRANSPARENT TESTA 19, GLUTATHIONE S-TRANSFERASE 26, ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE PHI 12, glutathione S-transferase phi 12 (.1) Potri.002G207479 [exp] 53 / 2e-08 AT1G02930 267 / 1e-91 EARLY RESPONSIVE TO DEHYDRATION 11, ARABIDOPSIS THALIANA GLUATIONE S-TRANSFERASE F3, ARABIDOPSIS GLUTATHIONE S-TRANSFERASE 1, glutathione S-transferase 6 (.1.2) Potri.014G132200 [exp] 50 / 2e-07 AT3G62760 295 / 2e-102 Glutathione S-transferase family protein (.1) Potri.002G015200 [exp] 47 / 2e-06 AT3G03190 208 / 4e-68 ARABIDOPSIS GLUTATHIONE-S-TRANSFERASE 6, glutathione S-transferase F11 (.1) Potri.002G207093 [exp] 47 / 2e-06 AT1G02930 263 / 5e-90 EARLY RESPONSIVE TO DEHYDRATION 11, ARABIDOPSIS THALIANA GLUATIONE S-TRANSFERASE F3, ARABIDOPSIS GLUTATHIONE S-TRANSFERASE 1, glutathione S-transferase 6 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000606 [exp] 355 / 1e-125 AT5G41240 351 / 1e-123 glutathione S-transferase THETA 2 (.1) Lus10008021 [exp] 352 / 2e-124 AT5G41210 348 / 1e-122 glutathione S-transferase THETA 1 (.1) Lus10008308 [exp] 345 / 3e-121 AT5G41210 347 / 4e-122 glutathione S-transferase THETA 1 (.1) Lus10008020 [exp] 166 / 3e-51 AT5G41210 174 / 4e-54 glutathione S-transferase THETA 1 (.1) Lus10020519 [exp] 69 / 4e-14 AT2G02390 283 / 2e-97 GLUTATHIONE S-TRANSFERASE 18, glutathione S-transferase zeta 1 (.1.2.3) Lus10005367 [exp] 68 / 9e-14 AT2G02390 284 / 4e-98 GLUTATHIONE S-TRANSFERASE 18, glutathione S-transferase zeta 1 (.1.2.3) Lus10029815 [exp] 67 / 2e-13 AT2G30860 332 / 2e-117 glutathione S-transferase PHI 9 (.1.2) Lus10020735 [exp] 67 / 2e-13 AT2G30860 334 / 4e-118 glutathione S-transferase PHI 9 (.1.2) Lus10001419 [exp] 63 / 6e-12 AT2G30860 297 / 3e-103 glutathione S-transferase PHI 9 (.1.2) Lus10026643 [exp] 60 / 8e-11 AT2G47730 269 / 2e-91 Arabidopsis thaliana glutathione S-transferase phi 8, GLUTATHIONE S-TRANSFERASE \(CLASS PHI\) 5, glutathione S-transferase phi 8 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [poplar] [flax] Thioredoxin PF02798 [poplar] [flax] GST_N Glutathione S-transferase, N-terminal domain CL0497 [poplar] [flax] GST_C PF14497 [poplar] [flax] GST_C_3 Glutathione S-transferase, C-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.003G125800.2 pacid=42786625 polypeptide=Potri.003G125800.2.p locus=Potri.003G125800 ID=Potri.003G125800.2.v4.1 annot-version=v4.1 ATGGAGCTGAAAGTATATGTAGATCGTCTGTCACAGCCATCAAGGGCAATTGTCATCTTCTGCAAGGTAAACAAGATAGACTTTGAAGAGGTTGGAATTG AGTTATTAAAGGGTCAACATCTAACTCCTGAATTCAAAGAAATAAATCCTATGGGAAAGGTGCCAGCTATTGTAGTTGATGGAAAGTTCAAGCTTTTTGA GAGTCACGCGATCCTAATCTTTCTTGCTTCTGCATTTCCTGGAGTTGCTGATCACTGGTATCCAGCTGATCTTTACAGGAGAGCTGAAATTCACTCAATT TTGGATTGGCATCACTCCAACTTACGTCGCGGCTCAGTTGAATTTATTCAGAATACTTTGCTAGCACCTTTTTTTGGTCGACCTCTGAATCCACAAGCAG CTGCCGAAGGCGAGAAAGTTTTGTCTTCATCCCTGTCAAAGATAGAGGCTCTGTGGCTTAAAGAGAGTGGCCAGTTCTTGCTAGGCAGTAGCCAACCATC CATAGCTGATGTATGCCTCGTCTGTGAGATAATGCAACTAGAGTTTACAGATGAAACGGATCGCAATCGCATACTTGGTCCACACAAGAAGATTCAGCAG TGGATTGAGGATACCAAAAATGCAACAAAACCACACTTTGATGAAGTGCATCAAGCCCTCTTTGCAGCCAAAGTTAAATTACAGATGCAACGTAAATAG
AA sequence Show only first row Show all	>Potri.003G125800.2 pacid=42786625 polypeptide=Potri.003G125800.2.p locus=Potri.003G125800 ID=Potri.003G125800.2.v4.1 annot-version=v4.1 MELKVYVDRLSQPSRAIVIFCKVNKIDFEEVGIELLKGQHLTPEFKEINPMGKVPAIVVDGKFKLFESHAILIFLASAFPGVADHWYPADLYRRAEIHSI LDWHHSNLRRGSVEFIQNTLLAPFFGRPLNPQAAAEGEKVLSSSLSKIEALWLKESGQFLLGSSQPSIADVCLVCEIMQLEFTDETDRNRILGPHKKIQQ WIEDTKNATKPHFDEVHQALFAAKVKLQMQRK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G41210		GSTU12, GST10, ...	glutathione S-transferase THET...		Potri.003G125800 [exp]	0	1	ATGSTT1.2
AT5G37780		ACAM-1, TCH1, C...	TOUCH 1, calmodulin 1 (.1.2.3)		Potri.015G032600 [exp]	3.74	0.6416	ACCAL.6
AT4G15940			Fumarylacetoacetate (FAA) hydr...		Potri.010G011000 [exp]	4.24	0.6474
AT1G52740		HTA9	histone H2A protein 9 (.1)		Potri.018G032000 [exp]	8.12	0.6259
AT1G13950		EIF5A, ATELF5A-...	eukaryotic elongation factor 5...		Potri.008G092000 [exp]	10.39	0.6131	Pt-EIF.3
AT1G50740			Transmembrane proteins 14C (.1...		Potri.001G424000 [exp]	15.68	0.5241
AT5G23395		MIA40	mitochondrial intermembrane sp...		Potri.010G254600 [exp]	18.02	0.6078
AT3G54840		ARA6, AtRABF1, ...	Ras-related small GTP-binding ...		Potri.010G226300 [exp]	21.79	0.5433	ARA6.1
AT1G25380		ATNDT2	NAD+ transporter 2, ARABIDOPSI...		Potri.008G123700 [exp]	27.65	0.5895
AT4G14410	bHLH	bHLH104	basic Helix-Loop-Helix 104, ba...		Potri.008G165700 [exp]	29.12	0.5630
					Potri.002G138200 [exp]	30.98	0.5382

Compare expression of checked genes

Potri.003G125800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.