Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G11610 1543 / 0 NTRB, ATNTRB C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) AT4G00700 1147 / 0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) AT3G57880 1129 / 0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) AT5G12970 1123 / 0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) AT1G51570 1105 / 0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) AT5G06850 1044 / 0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) AT3G61300 1019 / 0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) AT1G22610 999 / 0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) AT5G48060 998 / 0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) AT1G04150 852 / 0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G105400 [exp] 1849 / 0 AT4G11610 1567 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Potri.002G158000 [exp] 1453 / 0 AT4G11610 1400 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Potri.014G081700 [exp] 1448 / 0 AT4G11610 1422 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Potri.001G271400 [exp] 1155 / 0 AT5G48060 1481 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Potri.016G049100 [exp] 1130 / 0 AT3G57880 1425 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) Potri.006G058900 [exp] 1117 / 0 AT3G57880 1372 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) Potri.001G015700 [exp] 1100 / 0 AT5G12970 1295 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) Potri.T085601 [exp] 1098 / 0 AT5G12970 1315 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) Potri.003G210801 [exp] 1089 / 0 AT5G12970 1300 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000605 [exp] 1674 / 0 AT4G11610 1634 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Lus10018839 [exp] 1328 / 0 AT4G11610 1348 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Lus10016280 [exp] 1119 / 0 AT3G57880 1499 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) Lus10012026 [exp] 1117 / 0 AT3G57880 1496 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) Lus10023823 [exp] 1037 / 0 AT5G06850 1382 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Lus10021030 [exp] 1035 / 0 AT5G06850 1383 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Lus10001538 [exp] 984 / 0 AT1G22610 1425 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Lus10011271 [exp] 892 / 0 AT1G04150 1187 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Lus10010658 [exp] 794 / 0 AT5G17980 1382 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Lus10031244 [exp] 778 / 0 AT5G12970 979 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0154 [poplar] [flax] C2 PF00168 [poplar] [flax] C2 C2 domain CL0484 [poplar] [flax] Peroxisome PF08372 [poplar] [flax] PRT_C Plant phosphoribosyltransferase C-terminal
Representative CDS sequence Show only first row Show all	>Potri.003G125900.3 pacid=42787001 polypeptide=Potri.003G125900.3.p locus=Potri.003G125900 ID=Potri.003G125900.3.v4.1 annot-version=v4.1 ATGATGAGCAACCTTAAGCTAGGGGTAGAAGTGGTTAGTGCGCACAATCTTTTGCCCAAAGATGAGCACGGTTCATCCAGTGCCTTTGTAGAGCTCTGCT TTGACGGCCAGAGGTTCCGCACAACCATCAAAGAAAAGGATCCCAATCCTGTGTGGAGTGAGTGTTTCTACTTCAACATCCCTGACCCTTCCAACCTACA CTATCTTACTCTTGATGCCCATGTTTACAATAACATCAGAGCTACCAACTCCAGGTACTTCCTTGGTAAGGTTTGCCTCACTGGGAATTCATTTGTACCC TACTCGGATGCTGTTGTGTTGCACTACCCTCTGGAAAAGCGTGGAATTTTCTCGCGTGTAAGAGGAGAGCTTGGCCTGAAAGTTTATATCACTGATGATG CATCCATCAAATCCTCTACCCCACTTCCTGCAGTTGAATCTTTGCCAACAAAGGATCCAGGCTTAACACATGCCGTGGCTCCAATGGTAGACCCTATGAC AAATACTGTATCTCATAAAAGAGTTGAGAGACACACCTTTCATCATCTTCCTAACCCAAATCACCAGCAACAACAGCATCAGAATCATTCTTCTGCTCCT TCAATCACCCATCATGTACCAAAGTATGTGGCTGATGAGATGAAAGCTGCAGAAACACAGCCTCCAAAGTTAGTTCGAATGCACTCTGCATCATCATCAC AACCCGTTGACCATGCCCTTAAAGAGACAAGTCCCTTTCTTGGAGGGGGAAGAGTTGTTGGGGGTCGTGTTATTCGAGGAGACAAGACTGCAAGCACTTA TGATCTTGTTGAACGGATGTACTTCCTGTATGTAAGGGTTGTTAAGGCTCGTGATCTTCCTGCCATGGATGTTACAGGAAGTCTCGATCCGTTTGTTGAG GTGAGAGTTGGAAACTACAGAGGAATTACAAAGCACTTTGAGAAAAAGCAAAATCCAGAGTGGAATCAGGTGTTTGCTTTTTCAAGGGAACGGATGCAAG CTTCTGTTTTAGAAGTTGTTATTAAGGACAAGGATCTTGTTAAAGATGACTTTGTAGGCGTCATAAGGTTTGATATCAACGAGGTTCCTTCGAGAGTCCC ACCAGATAGTCCGCTAGCTCCGGAGTGGTATCGGCTTGAGGACAAGAAGGGAGAGAAGATAAAGGGCGAGCTAATGCTTGCGGTGTGGATTGGAACCCAA GCAGATGAGACCTTTCCTGATGCGTGGCATTCTGATGCAGCTACTCCTGTAGATAATACACCGGCTACCTCCACTGTTACACGTTCAAAGGTCTATCATG CACCAAGGTTGTGGTATGTACGTGTTAATGTTGTCGAGGCACAAGACTTGGTCCCATCAGAGAAGACACGTTTCCCTGAAGTGTATGCTAAGGTACAGAT GGGAAACCAAGTTTTGAAAACGAAGACATGTCAGGCTCGAACTTTTAGTGCGTTATGGAATGAGGATCTTTTATTCGTTGCTGCTGAACCCTTCGAGGAC CATCTAGTTCTTTCAGTTGAGGATCGTGTCGGTCCTGGAAAAGATGAGATAATCGGGATGGTCATCATCCCATTGCGCTCTGTGGAGAAGCGTGCTGATG ATCGGATAATTCATTCTCGCTGGTTTAACCTGGAAAAGCCAGTTGCTGTAGATGTAGATCAGTTCAAGAAAGACAAGTTCTCTAGCCGTATTCATCTTCG AGCCTGCTTAGATGGAGGATACCATGTTCTTGATGAGTCAACTCATTACAGCAGTGATCTTTGTCCAACGGCAAAACAGCTTTGGAGGCCTCCGATTGGG ATACTGGAACTAGGCATCTTAAATGCTGTGGGACTCCATCCTCTGAAAACACGAGATGGGAGGGGTACAGCCGATACGTACTGTGTTGCAAAGTATGGTC ACAAATGGGTCCGGACACGCACCCTTATTGACAACCCGTCTCCAAAATACAATGAGCAGTACACATGGGAAGTTTTTGATCCAGCTACAGTTCTTACAGT TGGTGTATTTGACAACAGCCAGCTTGGGGGAAAAGGTTCAAATGGAAAGGACCTAAAGATTGGGAAGGTTCGGATTCGCATCTCTACACTTGAAACTGGG CGTGTATATACGCACTCTTATCCCTTGCTGGTTCTTCATCCTACCGGGGTTAAGAAGATGGGGGAATTGCACTTGGCGATTAGATTTACATGCATATCTT TTGCAAACATGCTTTATCAGTACTCACGACCACTTCTACCCAAAATGCACTATATCAGGCCATTCAATGTGATGCAGCTAGATATGCTCCGCCACCAAGC TGTCAACATAGTAGCATTACGGTTAGGTCGGGCAGAACCTCCTCTTAGGAAAGAAGTGGTGGAGTACATGTCAGATGTGGACTCACACCTCTGGAGCATG CGTCGAAGCAAGGCAAATTTTCTTCGCTTGATGACTGTTTTCTCAGGATTATTTACAGCTGGAAAGTGGTTCGAGGATATTTGCATGTGGAAGAATCCTA TCACTACTGTGCTTGTTCATGTGCTCTATCTTATGCTTGCTTGCTTCCCAGAACTTATTCTGCCCACAGTTTTTCTTTACATGTTTCTGATAGGCATTTG GAATTACCGATATCGACCAAGGTACCCTCCCCACATGAACACAAAGATTTCACAGGCTGAGGCAGTGCATCCTGATGAGCTAGATGAGGAATTTGATACA TTCCCAACAAGCAGGAGCCCTGAGCTGGTGGGAATGAGGTATGATAGGTTACGAAGTGTTGCTGGAAGGATTCAAACTGTCATAGGCGATATAGCAACCC AAGGGGAGCGATTTCAGGCACTGTTAAGCTGGCGTGATCCACGGGCCACTGCCATCTTTGTTATATTCTGCCTTGTAGCTGCACTGGTTTTGTTTGTGAC GCCATTTCAGGTTATAGCAGCTTTGGCAGGCTTCTACATGATGAGGCATCCAAGATTTCGCTACAGGACACCATCTGTGCCCATTAACTTCTTTCGCAGG CTTCCTGCTCGGACAGATAGTATGCTGTAA
AA sequence Show only first row Show all	>Potri.003G125900.3 pacid=42787001 polypeptide=Potri.003G125900.3.p locus=Potri.003G125900 ID=Potri.003G125900.3.v4.1 annot-version=v4.1 MMSNLKLGVEVVSAHNLLPKDEHGSSSAFVELCFDGQRFRTTIKEKDPNPVWSECFYFNIPDPSNLHYLTLDAHVYNNIRATNSRYFLGKVCLTGNSFVP YSDAVVLHYPLEKRGIFSRVRGELGLKVYITDDASIKSSTPLPAVESLPTKDPGLTHAVAPMVDPMTNTVSHKRVERHTFHHLPNPNHQQQQHQNHSSAP SITHHVPKYVADEMKAAETQPPKLVRMHSASSSQPVDHALKETSPFLGGGRVVGGRVIRGDKTASTYDLVERMYFLYVRVVKARDLPAMDVTGSLDPFVE VRVGNYRGITKHFEKKQNPEWNQVFAFSRERMQASVLEVVIKDKDLVKDDFVGVIRFDINEVPSRVPPDSPLAPEWYRLEDKKGEKIKGELMLAVWIGTQ ADETFPDAWHSDAATPVDNTPATSTVTRSKVYHAPRLWYVRVNVVEAQDLVPSEKTRFPEVYAKVQMGNQVLKTKTCQARTFSALWNEDLLFVAAEPFED HLVLSVEDRVGPGKDEIIGMVIIPLRSVEKRADDRIIHSRWFNLEKPVAVDVDQFKKDKFSSRIHLRACLDGGYHVLDESTHYSSDLCPTAKQLWRPPIG ILELGILNAVGLHPLKTRDGRGTADTYCVAKYGHKWVRTRTLIDNPSPKYNEQYTWEVFDPATVLTVGVFDNSQLGGKGSNGKDLKIGKVRIRISTLETG RVYTHSYPLLVLHPTGVKKMGELHLAIRFTCISFANMLYQYSRPLLPKMHYIRPFNVMQLDMLRHQAVNIVALRLGRAEPPLRKEVVEYMSDVDSHLWSM RRSKANFLRLMTVFSGLFTAGKWFEDICMWKNPITTVLVHVLYLMLACFPELILPTVFLYMFLIGIWNYRYRPRYPPHMNTKISQAEAVHPDELDEEFDT FPTSRSPELVGMRYDRLRSVAGRIQTVIGDIATQGERFQALLSWRDPRATAIFVIFCLVAALVLFVTPFQVIAALAGFYMMRHPRFRYRTPSVPINFFRR LPARTDSML

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G11610		NTRB, ATNTRB	C2 calcium/lipid-binding plant...		Potri.003G125900 [exp]	0	1
AT5G36930			Disease resistance protein (TI...		Potri.005G206400 [exp]	1.00	0.8068
AT4G21790		ATTOM1, TOM1	tobamovirus multiplication 1 (...		Potri.004G018100 [exp]	12.24	0.7232	TOM1.2
AT5G62230		ERL1	ERECTA-like 1 (.1.2)		Potri.012G130400 [exp]	17.37	0.7933	ERL1.2
AT5G07990		CYP75B1, D501, ...	TRANSPARENT TESTA 7, CYTOCHROM...		Potri.007G084700 [exp]	19.28	0.7768
AT3G49900			Phototropic-responsive NPH3 fa...		Potri.005G149400 [exp]	21.28	0.7838
AT4G32890	GATA	GATA9	GATA transcription factor 9 (....		Potri.001G188500 [exp]	23.95	0.7645
AT2G18790		OOP1, HY3, PHYB	OUT OF PHASE 1, phytochrome B ...		Potri.010G145900 [exp]	30.29	0.7429
AT5G38220			alpha/beta-Hydrolases superfam...		Potri.004G097300 [exp]	32.24	0.6934
AT3G17860	ZIM	TIFY6B, JAI3, J...	JASMONATE-INSENSITIVE 3, jasmo...		Potri.015G035800 [exp]	35.91	0.7726
AT3G21100			RNA-binding (RRM/RBD/RNP motif...		Potri.001G255400 [exp]	39.47	0.7427

Compare expression of checked genes

Potri.003G125900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.