Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G11600 307 / 1e-106 LSC803, PHGPX, ATGPX6 glutathione peroxidase 6 (.1) AT4G31870 259 / 9e-88 ATGPX7 glutathione peroxidase 7 (.1) AT2G25080 247 / 9e-83 ATGPX1 glutathione peroxidase 1 (.1) AT1G63460 243 / 3e-82 ATGPX8 glutathione peroxidase 8 (.1) AT3G63080 240 / 4e-81 ATGPX5, MEE42 maternal effect embryo arrest 42, glutathione peroxidase 5 (.1) AT2G31570 240 / 5e-81 ATGPX2 glutathione peroxidase 2 (.1) AT2G48150 238 / 4e-80 ATGPX4 glutathione peroxidase 4 (.1) AT2G43350 239 / 5e-80 ATGPX3 glutathione peroxidase 3 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G105200 [exp] 319 / 3e-112 AT4G11600 298 / 3e-104 glutathione peroxidase 6 (.1) Potri.001G105100 [exp] 271 / 8e-93 AT1G63460 283 / 5e-99 glutathione peroxidase 8 (.1) Potri.007G126600 [exp] 255 / 1e-86 AT2G31570 281 / 1e-97 glutathione peroxidase 2 (.1) Potri.006G265400 [exp] 251 / 2e-84 AT2G25080 343 / 6e-121 glutathione peroxidase 1 (.1) Potri.014G138800 [exp] 240 / 4e-81 AT2G48150 271 / 1e-94 glutathione peroxidase 4 (.1) Potri.018G017500 [exp] 169 / 5e-53 AT2G25080 209 / 4e-69 glutathione peroxidase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008499 [exp] 319 / 3e-111 AT4G11600 307 / 2e-106 glutathione peroxidase 6 (.1) Lus10008537 [exp] 310 / 2e-108 AT4G11600 299 / 1e-104 glutathione peroxidase 6 (.1) Lus10008022 [exp] 304 / 2e-106 AT4G11600 301 / 1e-105 glutathione peroxidase 6 (.1) Lus10000603 [exp] 258 / 3e-88 AT4G11600 256 / 9e-88 glutathione peroxidase 6 (.1) Lus10008023 [exp] 258 / 6e-87 AT1G63460 265 / 9e-91 glutathione peroxidase 8 (.1) Lus10042418 [exp] 256 / 4e-86 AT4G31870 329 / 2e-115 glutathione peroxidase 7 (.1) Lus10027021 [exp] 253 / 7e-86 AT2G31570 266 / 2e-92 glutathione peroxidase 2 (.1) Lus10000601 [exp] 250 / 4e-85 AT1G63460 256 / 2e-88 glutathione peroxidase 8 (.1) Lus10026887 [exp] 252 / 9e-85 AT4G31870 332 / 3e-116 glutathione peroxidase 7 (.1) Lus10029651 [exp] 247 / 7e-84 AT2G48150 274 / 2e-95 glutathione peroxidase 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [poplar] [flax] Thioredoxin PF00578 [poplar] [flax] AhpC-TSA AhpC/TSA family
Representative CDS sequence Show only first row Show all	>Potri.003G126100.1 pacid=42785256 polypeptide=Potri.003G126100.1.p locus=Potri.003G126100 ID=Potri.003G126100.1.v4.1 annot-version=v4.1 ATGCTCACTTCTCGCTCTCGCATTCTCTCTCAAAAATATCTCAACTTTGCATCGTTATCTGCTTCTTTCTTATTATCAAAACAGTCATCTTTCAATTCCA AGCAAACCCTTTTGCCATCTTTGCATAACTCGCCAGTTTCTTTATATTCTCAGTCAATCAAAGCAGGGGTTTCAAGGCGTTTATTGGGTTCTGTAAGATT CAATCATTCAATGGCAAGCCAATCCAGTCCTCAATCTGCTCATGATTTCACTGTTAAGGATGCTAAGGGAAATGATGTTGACCTCAGCATTTATAAGGGG AAGGTCCTCTTGATTGTCAATGTTGCTTCACAATGTGGCTTGACCGATTCAAACTACACGGAGCTGACCCAGCTATATGCAAAATACAAGGATCAAGGTT TGGAGATTCTGGCTTTTCCGTGCAATCAATTTGGATCTCAGGAGCCTGGGAGCAGTGAAGAGATTGTGGAGTTTGCTTGCACTCGCTTTAAGGCTGAATA TCCCATATTTGATAAGGTTGAAGTGAATGGTAACAACGCTGCTCCAATTTACAAATACTTGAAGTCTAGCAAGGGTGGACTTTTTGGGGACAACATTAAA TGGAATTTTTCCAAGTTCCTGGTAGATAAAGAAGGCAAAGTTGTGGATCGTTATGCTCCCACTACCTCCCCTCTTAGCATTGAGAAAGAGGTGAAGAAAC TTCTGGGGATTGCTTAA
AA sequence Show only first row Show all	>Potri.003G126100.1 pacid=42785256 polypeptide=Potri.003G126100.1.p locus=Potri.003G126100 ID=Potri.003G126100.1.v4.1 annot-version=v4.1 MLTSRSRILSQKYLNFASLSASFLLSKQSSFNSKQTLLPSLHNSPVSLYSQSIKAGVSRRLLGSVRFNHSMASQSSPQSAHDFTVKDAKGNDVDLSIYKG KVLLIVNVASQCGLTDSNYTELTQLYAKYKDQGLEILAFPCNQFGSQEPGSSEEIVEFACTRFKAEYPIFDKVEVNGNNAAPIYKYLKSSKGGLFGDNIK WNFSKFLVDKEGKVVDRYAPTTSPLSIEKEVKKLLGIA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G11600		LSC803, PHGPX, ...	glutathione peroxidase 6 (.1)		Potri.003G126100 [exp]	0	1
AT5G46180		DELTA-OAT	ornithine-delta-aminotransfera...		Potri.011G082800 [exp]	1.00	0.8677
AT2G27450		CPA, ATNLP1, NL...	nitrilase-like protein 1 (.1.2...		Potri.004G201400 [exp]	7.61	0.8531	Pt-NLP1.2
AT4G24220		5[beta]-StR, 5[...	VEIN PATTERNING 1, Δ4,5-s...		Potri.002G120600 [exp]	7.93	0.8176
AT5G06060			NAD(P)-binding Rossmann-fold s...		Potri.008G059100 [exp]	11.31	0.8474
AT1G45230			Protein of unknown function (D...		Potri.002G125700 [exp]	14.14	0.8378
AT1G64230		UBC28	ubiquitin-conjugating enzyme 2...		Potri.001G471200 [exp]	15.58	0.8516	UBC.6
AT5G63030		GRXC1	glutaredoxin C1, Thioredoxin s...		Potri.015G078900 [exp]	16.30	0.8230	PtrcGrx_C1.1
AT5G46030			unknown protein		Potri.001G373400 [exp]	20.00	0.8217
AT4G16480		ATINT4	inositol transporter 4 (.1)		Potri.006G015300 [exp]	27.34	0.7983
AT3G16350	MYB		Homeodomain-like superfamily p...		Potri.001G189800 [exp]	30.19	0.8135

Compare expression of checked genes

Potri.003G126100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.