Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G12240 818 / 0 ATBETAFRUCT4, VAC-INV VACUOLAR INVERTASE, Glycosyl hydrolases family 32 protein (.1) AT1G62660 802 / 0 Glycosyl hydrolases family 32 protein (.1) AT3G13790 482 / 8e-164 ATCWINV1, ATBFRUCT1 ARABIDOPSIS THALIANA CELL WALL INVERTASE 1, Glycosyl hydrolases family 32 protein (.1.2) AT5G11920 454 / 1e-153 ATCWINV6 6-&1-fructan exohydrolase (.1.2) AT1G55120 456 / 2e-153 ATFRUCT5, ATCWINV3 6-fructan exohydrolase, beta-fructofuranosidase 5 (.1.2.3) AT3G52600 454 / 5e-153 ATCWINV2 cell wall invertase 2 (.1.2) AT2G36190 452 / 5e-152 ATCWINV4 cell wall invertase 4 (.1) AT3G13784 435 / 8e-146 ATCWINV5 cell wall invertase 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G112600 [exp] 1056 / 0 AT1G12240 882 / 0.0 VACUOLAR INVERTASE, Glycosyl hydrolases family 32 protein (.1) Potri.015G127100 [exp] 731 / 0 AT1G62660 712 / 0.0 Glycosyl hydrolases family 32 protein (.1) Potri.006G227500 [exp] 489 / 6e-167 AT3G13790 660 / 0.0 ARABIDOPSIS THALIANA CELL WALL INVERTASE 1, Glycosyl hydrolases family 32 protein (.1.2) Potri.006G210600 [exp] 486 / 1e-165 AT3G52600 770 / 0.0 cell wall invertase 2 (.1.2) Potri.016G077400 [exp] 480 / 3e-163 AT3G52600 755 / 0.0 cell wall invertase 2 (.1.2) Potri.016G077500 [exp] 479 / 7e-163 AT3G52600 751 / 0.0 cell wall invertase 2 (.1.2) Potri.006G227400 [exp] 478 / 2e-162 AT3G13790 703 / 0.0 ARABIDOPSIS THALIANA CELL WALL INVERTASE 1, Glycosyl hydrolases family 32 protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028922 [exp] 888 / 0 AT1G12240 832 / 0.0 VACUOLAR INVERTASE, Glycosyl hydrolases family 32 protein (.1) Lus10004340 [exp] 881 / 0 AT1G12240 833 / 0.0 VACUOLAR INVERTASE, Glycosyl hydrolases family 32 protein (.1) Lus10024605 [exp] 863 / 0 AT1G12240 805 / 0.0 VACUOLAR INVERTASE, Glycosyl hydrolases family 32 protein (.1) Lus10032242 [exp] 843 / 0 AT1G62660 800 / 0.0 Glycosyl hydrolases family 32 protein (.1) Lus10004031 [exp] 819 / 0 AT1G12240 783 / 0.0 VACUOLAR INVERTASE, Glycosyl hydrolases family 32 protein (.1) Lus10031144 [exp] 726 / 0 AT1G12240 729 / 0.0 VACUOLAR INVERTASE, Glycosyl hydrolases family 32 protein (.1) Lus10030278 [exp] 577 / 0 AT1G62660 562 / 0.0 Glycosyl hydrolases family 32 protein (.1) Lus10037633 [exp] 469 / 1e-158 AT3G13790 704 / 0.0 ARABIDOPSIS THALIANA CELL WALL INVERTASE 1, Glycosyl hydrolases family 32 protein (.1.2) Lus10014219 [exp] 464 / 2e-156 AT2G36190 711 / 0.0 cell wall invertase 4 (.1) Lus10008392 [exp] 462 / 3e-156 AT3G13790 756 / 0.0 ARABIDOPSIS THALIANA CELL WALL INVERTASE 1, Glycosyl hydrolases family 32 protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0143 [poplar] [flax] B_Fructosidase PF00251 [poplar] [flax] Glyco_hydro_32N Glycosyl hydrolases family 32 N-terminal domain CL0004 [poplar] [flax] Concanavalin PF08244 [poplar] [flax] Glyco_hydro_32C Glycosyl hydrolases family 32 C terminal CL0004 [poplar] [flax] PF11837 [poplar] [flax] DUF3357 Domain of unknown function (DUF3357)
Representative CDS sequence Show only first row Show all	>Potri.003G126300.2 pacid=42784525 polypeptide=Potri.003G126300.2.p locus=Potri.003G126300 ID=Potri.003G126300.2.v4.1 annot-version=v4.1 ATGGCAGACACAAGTCCATTGCTTCCATTTTCCCATTCTCTGGGCCCTGGTTCCACCTATAGTTCTATTAGATGGAGATCCAAGATAGTACTTCTCTTGG TATTTTCTGGTTTGTTTCTTGTTCCTTTAATTGTATCTATAGCTAGTAATGACAACGGATTCAAACAACACGTCCAATATTTACAAGAAGATGATCAAAA TGTATCTTTTTCTCCGCCCAAAGAAACGACAAAACCGCAAATTTTGAGGCCAGGATCACGGGGGGTGTCAGCTGGTGTGTCAGAGAAGGCCAACGTGAAT TTGAAGGGTGCACAAGAGAAGGGCTATCCTCAGAACGATAGCATGTTGTCATGGCAAAGAACTTCTTTCCATTTTCAACCTGAAAAGAATTGGATGAATG ACCCTAACGGTCCTTTGTATTACAAGGGCTGGTACCACTTTTTCTACCAGCACAATCCACATGCTGCAGTATGGGGTGACATAGTTTGGGGCCATGCTGT ATCAAGAGATCTAATCAACTGGTTCCACCTCCCATTGGCAATTGTTTCCGATGAATGGTTCGATATAAATGGTGTATGGACTGGCTCGGCGACTATTCTT CTTAATGGTAAAATTGTCATGCTATACACAGGATCCACTAACGAGTCAGTACAGGTACAAAATCTTGCCTATCCAGCTGATCACAATGATCCTCTCCTCC TTAAGTGGGTCAAGTACTCTGGCAATCCAGTTTTAGTCTCACCACCAGGCATTGATCCCAATGACTTCCGTGACCCGACAACAGCTTGGTACACTTCTGA AGGGAAGTGGCGCATCACAATAGGGTCAAAAGCTAACAATACTGGCATAGCTTTAGTCTATGATACTGAAGACTTCATAAATTTTAAGTTAAGTGGGGTA CTTCATGGTGTCCCTGGAACTGGAATGTGGGAGTGCGTGGATTTTTACCCTGTGTCGAAAACAGGTCAAAATGGATTGGATACATCGGCTAATGGTCCTC ATGTGAAGCATGTGGTGAAGACAAGCCTAGATGATGTTAGGAAGGATTCCTATGCCCTTGGGACATATGATGACAAGACTGGAAAATGGTATCCAGATAA TCCAGAAATTGATGTTGGTATCGGAATTATGCTCGATTATGGTATGTTCTATGCCTCCAAGACCTTTTATGATCAGGATAAAGGAAGAAGAGTGTTGTGG GGTTGGGTTGCAGAGTCTGATACTGAAGTTGATGACGTAAAGAAAGGATGGGCATCTCTTCAGGGCATTCCAAGGACTATTCTGTTGGATACAAAGACTA GTAGCAATCTGCTTCAATGGCCAGTAGAAGAGGTAGAGAGGTTAAGACTAAAAGGCAAGGAATTCAACAACATAGAGGTTAAGACAGGGTCGGTTATGCC GCTTGAACTTGACGGTGCCACACAACTAGACATTGCTGCTGAGTTTGAGTTGGACAAGAAGGCCTTAGAGAGCACAGCTGAATCCAATGTGGACTTCAGC TGCAGCACCAGTGGTGGGGCTGCTCAACGTGGTGCATTAGGACCGTTTGGTCTTCTGGTTCTTGCAGATGACAGCCTAGCTGAGCACACTTCTGTATACT TCTATGTTGCTAAAGGAAATAATGGCACCCACAAAACTTTCTTCTGCACTGACCAGTCAAGGTCTTCAGTGGCAAATGACGTTAAGAAAGAAATTTATGG AAGTTATGTTCCAGTTTTAGAGGGTGAAAAATTATCTGTTAGGATACTGGTGGATCATTCGATAGTCGAAAGTTTTGCTCAAGGTGGTCGGACAGTTATC ACATCACGGGTTTATCCAACAAGGGCAATCTATGGTGCTGCTAGGCTTTTTCTATTCAACAACGCCATTGAGGCTACCGTCACTTCCTCACTCAAGATAT GGCAAATGAATTCTGCATTTATACGCCGTTATTCTAACGAACAGTAG
AA sequence Show only first row Show all	>Potri.003G126300.2 pacid=42784525 polypeptide=Potri.003G126300.2.p locus=Potri.003G126300 ID=Potri.003G126300.2.v4.1 annot-version=v4.1 MADTSPLLPFSHSLGPGSTYSSIRWRSKIVLLLVFSGLFLVPLIVSIASNDNGFKQHVQYLQEDDQNVSFSPPKETTKPQILRPGSRGVSAGVSEKANVN LKGAQEKGYPQNDSMLSWQRTSFHFQPEKNWMNDPNGPLYYKGWYHFFYQHNPHAAVWGDIVWGHAVSRDLINWFHLPLAIVSDEWFDINGVWTGSATIL LNGKIVMLYTGSTNESVQVQNLAYPADHNDPLLLKWVKYSGNPVLVSPPGIDPNDFRDPTTAWYTSEGKWRITIGSKANNTGIALVYDTEDFINFKLSGV LHGVPGTGMWECVDFYPVSKTGQNGLDTSANGPHVKHVVKTSLDDVRKDSYALGTYDDKTGKWYPDNPEIDVGIGIMLDYGMFYASKTFYDQDKGRRVLW GWVAESDTEVDDVKKGWASLQGIPRTILLDTKTSSNLLQWPVEEVERLRLKGKEFNNIEVKTGSVMPLELDGATQLDIAAEFELDKKALESTAESNVDFS CSTSGGAAQRGALGPFGLLVLADDSLAEHTSVYFYVAKGNNGTHKTFFCTDQSRSSVANDVKKEIYGSYVPVLEGEKLSVRILVDHSIVESFAQGGRTVI TSRVYPTRAIYGAARLFLFNNAIEATVTSSLKIWQMNSAFIRRYSNEQ

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G12240		ATBETAFRUCT4, V...	VACUOLAR INVERTASE, Glycosyl h...		Potri.003G126300 [exp]	0	1
AT1G67750			Pectate lyase family protein (...		Potri.010G051800 [exp]	4.00	0.7696
AT1G70710		CEL1 ,AtGH9B1	CELLULASE 1, glycosyl hydrolas...		Potri.010G109200 [exp]	8.48	0.7932	Pt-CEL1.2
AT3G01570			Oleosin family protein (.1)		Potri.001G345800 [exp]	9.59	0.7088
AT4G35720			Arabidopsis protein of unknown...		Potri.005G103800 [exp]	11.83	0.7154
AT3G28917	ZF_HD	MIF2	mini zinc finger 2 (.1)		Potri.017G082701 [exp]	20.17	0.7254
AT3G28050			nodulin MtN21 /EamA-like trans...		Potri.001G032100 [exp]	30.75	0.6840
AT2G01940	C2H2ZnF	SGR5, ATIDD15	SHOOT GRAVITROPISM 5, ARABIDOP...		Potri.015G033100 [exp]	31.00	0.6966
AT2G45630			D-isomer specific 2-hydroxyaci...		Potri.003G119000 [exp]	32.75	0.6876
AT1G05440			C-8 sterol isomerases (.1)		Potri.010G086100 [exp]	34.17	0.7487
AT1G22220		AUF2	auxin up-regulated f-box prote...		Potri.001G021900 [exp]	38.57	0.6420

Compare expression of checked genes

Potri.003G126300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.