Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G63470 296 / 2e-98 AT-hook AT hook motif DNA-binding family protein (.1) AT1G63480 275 / 2e-90 AT-hook AT hook motif DNA-binding family protein (.1) AT2G45850 232 / 6e-74 AT-hook AT hook motif DNA-binding family protein (.1.2) AT3G61310 209 / 5e-65 AT-hook AT hook motif DNA-binding family protein (.1) AT2G33620 199 / 4e-61 AT-hook AT hook motif DNA-binding family protein (.1.2.3.4) AT4G12080 199 / 7e-61 AT-hook ATAHL1, AHL1 AT-hook motif nuclear-localized protein 1 (.1) AT4G22770 178 / 4e-53 AT-hook AT hook motif DNA-binding family protein (.1) AT4G17950 171 / 2e-49 AT-hook AT hook motif DNA-binding family protein (.1) AT4G25320 159 / 3e-45 AT-hook AT hook motif DNA-binding family protein (.1) AT5G46640 151 / 2e-42 AT-hook AT hook motif DNA-binding family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G104900 [exp] 533 / 0 AT1G63470 281 / 1e-92 AT hook motif DNA-binding family protein (.1) Potri.014G082100 [exp] 292 / 2e-97 AT2G45850 229 / 8e-73 AT hook motif DNA-binding family protein (.1.2) Potri.002G158200 [exp] 286 / 3e-95 AT2G45850 219 / 4e-69 AT hook motif DNA-binding family protein (.1.2) Potri.002G005000 [exp] 207 / 1e-63 AT2G33620 228 / 8e-72 AT hook motif DNA-binding family protein (.1.2.3.4) Potri.002G148600 [exp] 200 / 1e-61 AT4G12080 248 / 2e-80 AT-hook motif nuclear-localized protein 1 (.1) Potri.003G090900 [exp] 199 / 6e-61 AT4G17950 216 / 3e-66 AT hook motif DNA-binding family protein (.1) Potri.014G070000 [exp] 197 / 1e-60 AT4G12080 233 / 2e-74 AT-hook motif nuclear-localized protein 1 (.1) Potri.001G143500 [exp] 197 / 4e-60 AT4G17950 243 / 9e-77 AT hook motif DNA-binding family protein (.1) Potri.012G129500 [exp] 190 / 1e-57 AT5G62260 202 / 2e-61 AT hook motif DNA-binding family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008533 [exp] 356 / 3e-122 AT1G63470 292 / 7e-97 AT hook motif DNA-binding family protein (.1) Lus10008535 [exp] 348 / 4e-119 AT1G63470 296 / 3e-98 AT hook motif DNA-binding family protein (.1) Lus10008497 [exp] 282 / 1e-93 AT1G63470 225 / 4e-71 AT hook motif DNA-binding family protein (.1) Lus10001997 [exp] 244 / 7e-79 AT1G63470 174 / 1e-51 AT hook motif DNA-binding family protein (.1) Lus10037858 [exp] 219 / 1e-68 AT2G45850 278 / 1e-91 AT hook motif DNA-binding family protein (.1.2) Lus10030381 [exp] 213 / 2e-66 AT2G45850 284 / 3e-94 AT hook motif DNA-binding family protein (.1.2) Lus10040085 [exp] 184 / 7e-55 AT4G17950 241 / 9e-76 AT hook motif DNA-binding family protein (.1) Lus10004022 [exp] 182 / 3e-54 AT4G12080 288 / 1e-95 AT-hook motif nuclear-localized protein 1 (.1) Lus10030269 [exp] 181 / 8e-54 AT4G12080 294 / 7e-98 AT-hook motif nuclear-localized protein 1 (.1) Lus10030962 [exp] 181 / 2e-53 AT4G17950 235 / 2e-73 AT hook motif DNA-binding family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0615 [poplar] [flax] ALDC PF03479 [poplar] [flax] PCC Plants and Prokaryotes Conserved (PCC) domain
Representative CDS sequence Show only first row Show all	>Potri.003G126500.1 pacid=42787522 polypeptide=Potri.003G126500.1.p locus=Potri.003G126500 ID=Potri.003G126500.1.v4.1 annot-version=v4.1 ATGGATGGAAGAGAAACCATGGCATTTCCTAGTGGGTCATCTTCATACTATATTCACAGAGGAAGTGGGATTCTTGGGTCTGGGTCTGGATCACAACATG ATCCATTACATCCCCCAACTGGGTTCAGATCCTTGTCAAGCCCTCACCTTGCATCTCAATCAAATGTCAGGCCTGGTTCATCTGCGCCAGCATTTTCAAT AGAGCCGCCAAATGCTAATTTTGGCCATGGCATTAACATGGCTGCAACCTCTGAGGTGCAAGTGGGCGAGCCAGTGAAGAAGAAGCGAGGTAGGCCCCGA AAATACGGTTTGGATGGGCAGGTTTCACTTGGATTGTCTTCCTTCCCAGATAAGGCTAAGCCATCCTCAGGGGAGGATTCTTCCACCTCAAAACGAAATC GAGGGCGGCCGCCTGGGAGTGGAAGGAAGCAGCAATTGGCTACCCTTGGTGAATGGATGAACAGTTCAGCTGGACTAGCTTTTTCACCCCATGTGGTCAG CATTGGAGTTGGAGAGGATATTGTTTCAAAACTATTGTCATTTTCCCAACAGAGGCCAAGGGCTGTTTGCATCTTGTCCGGTACTGGTACAGTTTCCTCT GTGACACTTCGTCAGCCAGCATCTTCTGGGCCCCCTATCACATACGAGGGCCGTTTTGAGATATTATGCTTGTCAGGCTCATACTTGATTGCTGAAGATG GTGGCCCTCGCAATCGAACTGGTGGTATAAGTGCTTCTTTTTCCAGTCCTGATGGCCATGTCATTGGTGGTGCAATTGCAATGCTTATTGCAGCTAGCCC AGTTCAGGTGGTTGTCTGTACTTTCCTATATGGTGGTTCTAAGAAGGATAAACAAGTAGGCCGTCCCAAAAACAAAAAAGACTCTGCATCTCAGCTCGAT GATAATTCTGCTAACCTGAAATCAGCCACCCCTACCAGCACTCCTCAAAGTTTCACTCCCTCTCTGATAAGTGTTTGGCCTGGTCCGCGACCAGCTGATA TCAGAAACCCCCACACTGATATTGACTTGACAAGAGGATGA
AA sequence Show only first row Show all	>Potri.003G126500.1 pacid=42787522 polypeptide=Potri.003G126500.1.p locus=Potri.003G126500 ID=Potri.003G126500.1.v4.1 annot-version=v4.1 MDGRETMAFPSGSSSYYIHRGSGILGSGSGSQHDPLHPPTGFRSLSSPHLASQSNVRPGSSAPAFSIEPPNANFGHGINMAATSEVQVGEPVKKKRGRPR KYGLDGQVSLGLSSFPDKAKPSSGEDSSTSKRNRGRPPGSGRKQQLATLGEWMNSSAGLAFSPHVVSIGVGEDIVSKLLSFSQQRPRAVCILSGTGTVSS VTLRQPASSGPPITYEGRFEILCLSGSYLIAEDGGPRNRTGGISASFSSPDGHVIGGAIAMLIAASPVQVVVCTFLYGGSKKDKQVGRPKNKKDSASQLD DNSANLKSATPTSTPQSFTPSLISVWPGPRPADIRNPHTDIDLTRG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G63470	AT-hook		AT hook motif DNA-binding fami...		Potri.003G126500 [exp]	0	1
AT3G14240			Subtilase family protein (.1)		Potri.001G163600 [exp]	1.00	0.7863
AT5G16690		ORC3, ATORC3	origin recognition complex sub...		Potri.013G077200 [exp]	6.92	0.7582
AT2G31270		ATCDT1A, CDT1A,...	ARABIDOPSIS HOMOLOG OF YEAST C...		Potri.005G222700 [exp]	7.34	0.7403
AT1G34210		ATSERK2, SERK2	somatic embryogenesis receptor...		Potri.007G082400 [exp]	8.71	0.7610
AT1G55360			Protein of Unknown Function (D...		Potri.001G003800 [exp]	11.22	0.7304
AT3G25500		AHF1, AFH1, ATF...	ARABIDOPSIS THALIANA FORMIN HO...		Potri.017G009900 [exp]	11.95	0.7326
AT3G13000			Protein of unknown function, D...		Potri.007G003900 [exp]	13.26	0.7557
AT4G32785			unknown protein		Potri.018G042000 [exp]	16.97	0.7342
AT5G11520		YLS4, ASP3	YELLOW-LEAF-SPECIFIC GENE 4, a...		Potri.006G241500 [exp]	17.14	0.6855
AT1G71830		ATSERK1, SERK1	somatic embryogenesis receptor...		Potri.005G083300 [exp]	17.43	0.7235

Compare expression of checked genes

Potri.003G126500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.