Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G63500 805 / 0 Protein kinase protein with tetratricopeptide repeat domain (.1) AT5G41260 793 / 0 Protein kinase protein with tetratricopeptide repeat domain (.1) AT4G00710 754 / 0 BSK3 BR-signaling kinase 3 (.1) AT5G59010 728 / 0 Protein kinase protein with tetratricopeptide repeat domain (.1.2) AT3G54030 692 / 0 Protein kinase protein with tetratricopeptide repeat domain (.1) AT1G01740 654 / 0 Protein kinase protein with tetratricopeptide repeat domain (.1.2) AT4G35230 593 / 0 BSK1 BR-signaling kinase 1 (.1) AT5G46570 585 / 0 BSK2 BR-signaling kinase 2 (.1) AT3G09240 559 / 0 Protein kinase protein with tetratricopeptide repeat domain (.1) AT5G01060 541 / 0 Protein kinase protein with tetratricopeptide repeat domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G104700 [exp] 935 / 0 AT1G63500 791 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1) Potri.014G082400 [exp] 803 / 0 AT4G00710 826 / 0.0 BR-signaling kinase 3 (.1) Potri.002G158400 [exp] 795 / 0 AT4G00710 820 / 0.0 BR-signaling kinase 3 (.1) Potri.006G093900 [exp] 743 / 0 AT3G54030 844 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1) Potri.016G105800 [exp] 738 / 0 AT3G54030 835 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1) Potri.001G246400 [exp] 723 / 0 AT5G59010 868 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1.2) Potri.009G039500 [exp] 716 / 0 AT5G59010 857 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1.2) Potri.009G142800 [exp] 596 / 0 AT4G35230 890 / 0.0 BR-signaling kinase 1 (.1) Potri.014G179300 [exp] 596 / 0 AT5G46570 814 / 0.0 BR-signaling kinase 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008530 [exp] 869 / 0 AT1G63500 834 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1) Lus10008494 [exp] 865 / 0 AT1G63500 831 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1) Lus10001998 [exp] 832 / 0 AT1G63500 811 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1) Lus10037856 [exp] 743 / 0 AT4G00710 764 / 0.0 BR-signaling kinase 3 (.1) Lus10030383 [exp] 742 / 0 AT4G00710 770 / 0.0 BR-signaling kinase 3 (.1) Lus10027743 [exp] 721 / 0 AT3G54030 824 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1) Lus10035550 [exp] 721 / 0 AT3G54030 817 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1) Lus10040719 [exp] 710 / 0 AT5G59010 820 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1.2) Lus10018849 [exp] 693 / 0 AT4G00710 726 / 0.0 BR-signaling kinase 3 (.1) Lus10016454 [exp] 688 / 0 AT5G59010 774 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.003G126700.1 pacid=42786824 polypeptide=Potri.003G126700.1.p locus=Potri.003G126700 ID=Potri.003G126700.1.v4.1 annot-version=v4.1 ATGGGCTGCGAGTGTTCGAAGCTTTCTAAGTGTTGTTGGAGCTCTGACTATAATGGATCAGTTCCCGAGGACCGCAATGAGGTTAATGAAGAGAAGAGTG AACTTGACGATTTGCCTGCATTTCGTGAATACAACATCGAAACCCTAAGGATGGCGACATCAGGGTTTTCTGTAGAAAATATAGTTTCTGAACATGGGGA AAAGGCTCCAAATGTGGTTTATAAGGGGAAGCTTGAGAATCAGAGGAGGGTTGCTGTGAAACGGTTTAATAGATCAGCTTGGCCTGATGCCAGGCAGTTT TTGGAAGAAGCAAGAGCTGTTGGTCAGCTCCGGAACCATAGGTTGGCAAATTTACTTGGCTGTTGTGGTGAAGGGGATGAGAGGTTACTTGTTGCAGAGT TTATGCCCAATGATACATTAGCCAAACACTTATTCCATTGGGAAACAAAACCAATGAAATGGGCAATGCGACTTAGAGTGGCTCTCCATCTTGCGCAAGC TCTAGAATATTGTACCAGCAAGGGACGTGCTCTGTACCATGATCTGAATGCTTATAGAATTGTCTTTGATGATGAGGGCAACCCTAGACTTTCATGCTTT GGTCTGATGAAGAACAGGAGAGATGGAAAGAGTTACAGTACAAACTTGGCGTTTACTCCTCCTGAGTATCTGAGGACGGGAAGGGTAATACCAGAAAGTG TAATTTATAGCTTTGGCACCCTTTTGCTGGACCTTCTTAGTGGGAAACATATTCCTCCCAGCCATGCACTGGATTTGATAAGGGACAGAAATATTCAAAT GCTGACAGATTCTTGCTTGGAAGGCCAATTTACAAATGATGATGGAACTGAGTTGGTGCGGTTAGCTTCACGTTGTTTACAATATGAGCCCCGGGAGCGA CCAAATTCAAAGTCTTTAGTTGCTGCTTTGATTCCTCTTCAGAAGGATACCGAGGTTCCTTCTCATGAATTGATGGGGATACAAGATGGTGCTGCAGCAT TACCTCTTTCACCACTTGGCGAGGCTTGTTTAAGAATGGATTTGACTGCCATACATGAGATTTTAGAAAAGCTTGGGTATAAAGATGACGAGGGTACAGC TACTGAGCTCTCATTCCAGATGTGGACCAACCAAAAGCAGGAAACATTAAATACGAAGAAGGGAGATGTTGCTTTCCAGCACAAAGATTTTATAGCTGCC ACTGAACTCTATTCCCAGTTCATTGATGTTGGAAACATGGTTTCCCCAACCGTTCATGCACGCCGAAGTCTATCCTACCTCATGACCAACTTGCCCCAGG AGGCCCTAAATGATGCACTGCAAGCCCAGGCAATATCCCCTATTTGGCATATTGCATCTTATTTACAAGCAGTAGCTCTTTTTGTGCTGGGAAGGGAGAA CGAAGCACAAGCAGCTCTAAAAGAGGGATCAACTCTTGAAAATAAAAGGAGCACAAATGCCTGA
AA sequence Show only first row Show all	>Potri.003G126700.1 pacid=42786824 polypeptide=Potri.003G126700.1.p locus=Potri.003G126700 ID=Potri.003G126700.1.v4.1 annot-version=v4.1 MGCECSKLSKCCWSSDYNGSVPEDRNEVNEEKSELDDLPAFREYNIETLRMATSGFSVENIVSEHGEKAPNVVYKGKLENQRRVAVKRFNRSAWPDARQF LEEARAVGQLRNHRLANLLGCCGEGDERLLVAEFMPNDTLAKHLFHWETKPMKWAMRLRVALHLAQALEYCTSKGRALYHDLNAYRIVFDDEGNPRLSCF GLMKNRRDGKSYSTNLAFTPPEYLRTGRVIPESVIYSFGTLLLDLLSGKHIPPSHALDLIRDRNIQMLTDSCLEGQFTNDDGTELVRLASRCLQYEPRER PNSKSLVAALIPLQKDTEVPSHELMGIQDGAAALPLSPLGEACLRMDLTAIHEILEKLGYKDDEGTATELSFQMWTNQKQETLNTKKGDVAFQHKDFIAA TELYSQFIDVGNMVSPTVHARRSLSYLMTNLPQEALNDALQAQAISPIWHIASYLQAVALFVLGRENEAQAALKEGSTLENKRSTNA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G63500			Protein kinase protein with te...		Potri.003G126700 [exp]	0	1
AT3G54320	AP2_ERF	ATWRI1, ASML1, ...	WRINKLED 1, WRINKLED, ACTIVATO...		Potri.010G247200 [exp]	2.00	0.8627
AT5G38460			ALG6, ALG8 glycosyltransferase...		Potri.017G114100 [exp]	2.23	0.8600
AT3G13340			Transducin/WD40 repeat-like su...		Potri.014G147500 [exp]	3.87	0.8486
AT4G27190			NB-ARC domain-containing disea...		Potri.013G015900 [exp]	4.47	0.8602
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Potri.010G154601 [exp]	4.89	0.8592
AT5G58003		CPL4	C-terminal domain phosphatase-...		Potri.018G108300 [exp]	5.19	0.8556
AT3G54440			glycoside hydrolase family 2 p...		Potri.001G027400 [exp]	6.00	0.8498
AT5G20320		DCL4, ATDCL4	dicer-like 4 (.1.2)		Potri.006G188800 [exp]	7.74	0.8544	DCL905
AT1G27900			RNA helicase family protein (....		Potri.010G057200 [exp]	9.38	0.8374
AT2G13540		ENS, CBP80, ABH...	ENSALADA, CAP-BINDING PROTEIN ...		Potri.009G049200 [exp]	10.58	0.8317

Compare expression of checked genes

Potri.003G126700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.