Plant FIBer expression Database

Potri.003G126900 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G23100 881 / 0 ATECS1, CAD2, GSH1, PAD2, RML1, GSHA ROOT MERISTEMLESS 1, PHYTOALEXIN DEFICIENT 2, CADMIUM SENSITIVE 2, glutamate-cysteine ligase (.1.2.3)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G104500
[exp]
1022 / 0 AT4G23100 865 / 0.0 ROOT MERISTEMLESS 1, PHYTOALEXIN DEFICIENT 2, CADMIUM SENSITIVE 2, glutamate-cysteine ligase (.1.2.3)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10002001
[exp]
902 / 0 AT4G23100 858 / 0.0 ROOT MERISTEMLESS 1, PHYTOALEXIN DEFICIENT 2, CADMIUM SENSITIVE 2, glutamate-cysteine ligase (.1.2.3)
Lus10035496
[exp]
893 / 0 AT4G23100 858 / 0.0 ROOT MERISTEMLESS 1, PHYTOALEXIN DEFICIENT 2, CADMIUM SENSITIVE 2, glutamate-cysteine ligase (.1.2.3)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0286 GCS PF04107 GCS2 Glutamate-cysteine ligase family 2(GCS2)
Representative CDS sequence
>Potri.003G126900.3 pacid=42787280 polypeptide=Potri.003G126900.3.p locus=Potri.003G126900 ID=Potri.003G126900.3.v4.1 annot-version=v4.1
ATGACGCTGGTTTCCCAGGCTGGTCCATCATACTGTATACCTACTGATATAAGCCGCTGTAAAACTGCACAAAATGTGGTTATTGGTATGGCTAGTAACA
TTGATGCATCTAAGCTGAAGGAAACACCCGCCAGATTCTCTTCATTATCATGTAATTCTAGCAAGACACCTAAGATTCTGAGTTCAGAGAGTCTGTCCGT
AGGAATGAAAAGAGGGCATCAATTTGTTGTCGCCGCAAGCCCTCCTACAGAAGATGCTGTCGTTGCCACAGAACCACTAACGAAAGAGGATCTTATTAGA
TACCTTGCCTCTGGTTGCAAGCCTAAGGAAAATTGGAGAATAGGTACAGAACATGAGAAGTTTGGTTTTGAGATTGGAACTTTGCGCCCTATGAAATATG
AACAGATTGCAGAGTTGCTTCATGGTATTGCTGAGAGATTTGACTGGGACAAAATAATGGAAGGTGACACCATCATAGGACTTAAACAGGAGAAGCAAAG
CATATCATTAGAGCCTGGTGGTCAGTTTGAGCTCAGTGGAGCACCTGTAGAAACTTTGCATCAAACTTGTGCAGAAGTTAATTCACACCTTTATCAGGTG
AAAGCTGTTGCAGAGGAAATGGGAATTGGATTCTTAGGAATTGGCTTCCAGCCTAAATGGGTACTCAAAGACATACCTATTATGCCCAAGGGAAGATATG
ATATCATGAGGAATTACATGCCCAAAGTTGGCTCACTAGGACTTGATATGATGTTTAGGACTTGCACTGTTCAGGTTAACCTGGACTTCAGTTCCGAGGC
TGACATGATAAGAAAATTTCGTGCTGGCCTTGCTTTGCAGCCGATAGCAACAGCTCTATTTGCAAACTCACCTTTCACTGATGGAAAACCAAATGGCTAT
CTCAGCAAGAGAAGCCATATCTGGACTGATACTGACAACAACCGTGCTGGGATGCTCCCATTTGTTTTTGATGACAACTTTGGGTTTGAGCAGTATGTTG
ATTATGCTCTTGATGTTCCAATGTATTTCGTGTATCGGAAAGAGAAGTATATTGACTGTACTGGAATGTCATTCCGGGACTTTTTGGCAGGAAGACTTCC
ATGCATTCCTGGTGAATTGCCTACTCTTAATGACTGGGAAAACCATTTGACAACAATATTTCCCGAGGTCAGGTTGAAGAGATACTTAGAGATGAGGGGT
GCTGATGGAGGGCCTTGGAGGAGGTTATGTGCATTGCCAGCATTTTGGGTAGGGCTGTTATACGATGAAGACTCACTTCAAAGTGTTCTAGACATGACAG
CTGACTGGACTTCTGAAGAAAGACAAATGTTAAGGAATAAGGTTCCAAAGACAGGTCTAAAGACACCATTCCGGGATGGGCTGTTGAGACACGTTGCTGA
AGAAGTTCTAAAGCTAGCTAAGGATGGCTTAGAAAGGAGAGGCTTCAAGGAAGTTGGTTTCTTGAACGCAGTGGCTGAGGTGGCCAGCACAGGCATAACA
CCAGCAGAGAAGCTTTTGGAACTTTACCATGGAAAGTGGGGGCAGTCTATAGATCCTGTTTTTGAAGAGCTACTTTACTAA
AA sequence
>Potri.003G126900.3 pacid=42787280 polypeptide=Potri.003G126900.3.p locus=Potri.003G126900 ID=Potri.003G126900.3.v4.1 annot-version=v4.1
MTLVSQAGPSYCIPTDISRCKTAQNVVIGMASNIDASKLKETPARFSSLSCNSSKTPKILSSESLSVGMKRGHQFVVAASPPTEDAVVATEPLTKEDLIR
YLASGCKPKENWRIGTEHEKFGFEIGTLRPMKYEQIAELLHGIAERFDWDKIMEGDTIIGLKQEKQSISLEPGGQFELSGAPVETLHQTCAEVNSHLYQV
KAVAEEMGIGFLGIGFQPKWVLKDIPIMPKGRYDIMRNYMPKVGSLGLDMMFRTCTVQVNLDFSSEADMIRKFRAGLALQPIATALFANSPFTDGKPNGY
LSKRSHIWTDTDNNRAGMLPFVFDDNFGFEQYVDYALDVPMYFVYRKEKYIDCTGMSFRDFLAGRLPCIPGELPTLNDWENHLTTIFPEVRLKRYLEMRG
ADGGPWRRLCALPAFWVGLLYDEDSLQSVLDMTADWTSEERQMLRNKVPKTGLKTPFRDGLLRHVAEEVLKLAKDGLERRGFKEVGFLNAVAEVASTGIT
PAEKLLELYHGKWGQSIDPVFEELLY

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G23100 ATECS1, CAD2, G... ROOT MERISTEMLESS 1, PHYTOALEX... Potri.003G126900
[exp]
0 1
Potri.010G061000
[exp]
2.23 0.8386
AT2G29420 GST25, ATGSTU7 GLUTATHIONE S-TRANSFERASE 25, ... Potri.010G070900
[exp]
5.47 0.8203
AT4G31340 myosin heavy chain-related (.1... Potri.006G076700
[exp]
10.24 0.8125
AT2G40390 unknown protein Potri.010G183100
[exp]
11.61 0.7854
AT1G76690 OPR2, ATOPR2 ARABIDOPSIS 12-OXOPHYTODIENOAT... Potri.013G102800
[exp]
12.96 0.7420
AT1G08630 THA1 threonine aldolase 1 (.1.2.3.4... Potri.019G018500
[exp]
18.13 0.7385
AT3G14470 NB-ARC domain-containing disea... Potri.017G121700
[exp]
18.33 0.7733
AT4G37980 ELI3-1, ATCAD7 CINNAMYL-ALCOHOL DEHYDROGENASE... Potri.009G063400
[exp]
22.97 0.8200 Pt-CAD.3
AT1G76690 OPR2, ATOPR2 ARABIDOPSIS 12-OXOPHYTODIENOAT... Potri.013G102750
[exp]
24.24 0.7384
AT1G13340 Regulator of Vps4 activity in ... Potri.004G100900
[exp]
25.45 0.7932

Potri.003G126900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.