Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G11570 491 / 8e-175 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) AT3G10970 106 / 2e-25 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.3) AT4G21470 56 / 1e-08 ATFMN/FHY riboflavin kinase/FMN hydrolase (.1) AT1G56500 50 / 2e-06 haloacid dehalogenase-like hydrolase family protein (.1) AT4G39970 41 / 0.0008 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G104366 [exp] 689 / 0 AT4G11570 494 / 9e-176 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) Potri.019G049000 [exp] 103 / 2e-24 AT3G10970 510 / 0.0 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.3) Potri.002G077200 [exp] 74 / 2e-14 AT4G21470 561 / 0.0 riboflavin kinase/FMN hydrolase (.1) Potri.005G183400 [exp] 68 / 2e-12 AT4G21470 575 / 0.0 riboflavin kinase/FMN hydrolase (.1) Potri.013G007800 [exp] 50 / 3e-06 AT1G56500 1489 / 0.0 haloacid dehalogenase-like hydrolase family protein (.1) Potri.001G147400 [exp] 47 / 1e-05 AT2G38740 350 / 2e-123 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.015G088500 [exp] 45 / 5e-05 AT3G48420 434 / 5e-154 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.007G095200 [exp] 44 / 0.0002 AT4G39970 439 / 3e-156 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035494 [exp] 533 / 0 AT4G11570 493 / 2e-175 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) Lus10002002 [exp] 531 / 0 AT4G11570 491 / 9e-175 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) Lus10034213 [exp] 106 / 2e-25 AT3G10970 537 / 0.0 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.3) Lus10029053 [exp] 106 / 2e-25 AT3G10970 539 / 0.0 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.3) Lus10018906 [exp] 71 / 3e-13 AT4G21470 556 / 0.0 riboflavin kinase/FMN hydrolase (.1) Lus10028605 [exp] 71 / 4e-13 AT4G21470 558 / 0.0 riboflavin kinase/FMN hydrolase (.1) Lus10018435 [exp] 69 / 1e-12 AT4G21470 553 / 0.0 riboflavin kinase/FMN hydrolase (.1) Lus10013663 [exp] 57 / 8e-09 AT3G48420 427 / 4e-151 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10033034 [exp] 57 / 9e-09 AT3G48420 424 / 4e-150 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10029840 [exp] 53 / 3e-07 AT1G56500 1528 / 0.0 haloacid dehalogenase-like hydrolase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0137 [poplar] [flax] HAD PF13419 [poplar] [flax] HAD_2 Haloacid dehalogenase-like hydrolase
Representative CDS sequence Show only first row Show all	>Potri.003G127100.1 pacid=42787393 polypeptide=Potri.003G127100.1.p locus=Potri.003G127100 ID=Potri.003G127100.1.v4.1 annot-version=v4.1 ATGGCGGATTCAGTTGCTGCAGCATCTCTTATTGGATATAGGCCACTGTGTGGGGGATTGTCTGTCAAGGATACTTCTTACAGGAGAAAGTCTTTGAGTA GTTGTCGGTGTCCGATAAAAGAAGCCGTGGGTAAAAGGCTTGTTTATTCTTCTCCTATGTTGCCAAGATTGAAAATTGATAGGTTAGTTAATACCTCAAT TAAGGCTCTGGCAACAGAGCTCACGAAAAAGGTGTATTCATACAGGGAGGAAGAGAGAATACCACGGACTTGGAATTACCGAGTTGATACTGGTGTTGAT AGAAAACCAGGTTTGTGGCCACCAGAGAACAGAGCGGATAATGCTTTGTTGCATAATCCCTTGATTCGACAAGAAAGGATGGGTTGCAGTTGGCTGGGTG CTATATTTGAGTGGGAGGGTGTGATAATTGAGGACAATCCTGATCTCGAGAGGCAAGCTTGGCTTGCTCTTTCCCGAGAAGAAGGAAAACCCACTCCTCC AGCTTTTATTTTGAGACGAGTAGACGGGATGAAGAATGAGCAAGCGATTTCTGAAGTCTTGTGTTGGTCGAGAGACCCGCCAGAGATGAAAAGAATGGCT ACAAGGAAGGAAGAAATCTACCAATCTCTTCAAGGTGGGATATACAGATTACGAACTGGCTCAAAGGAGTTTGTGAATATTTTGATGCATTACAAGATAC CAATGGCATTGGTTTCCACGCGTCCAAGAAAAACTCTCGAGAGTGCAATTGGAACTGTCGGGATTGAAGGGTATTTCACTGCTATTGTAGCAGCAGAAGA TGTTCACAGGGGGAAGCCTGATCCGGAGATGTTTATTTATGCAGCCCAGCTTCTAAACTTTATACCACAGCGCTGTATTGTGTTTGGGAACTCTAATCAA ACCGTGGAGGCTGCACACGATGCTTTTATGAAGTGTGTTGCTATTGCTAGTAAGCATCCCGTGTATGAGCTTGGTGCTGCAGACTTGGTGGTGAGGAAAC TAGATGAACTTTCAATTGTTGATCTGAAGAATCTTGCTGATATTGAATCGCCAGAATTTGGGCCTGTTGAGCTAGAGACGGAGCTGGAGCCTGAGGAGGA TAATGATCGATCTACCTCAGCGGGAGTTGATGATATCTTCTGGTAA
AA sequence Show only first row Show all	>Potri.003G127100.1 pacid=42787393 polypeptide=Potri.003G127100.1.p locus=Potri.003G127100 ID=Potri.003G127100.1.v4.1 annot-version=v4.1 MADSVAAASLIGYRPLCGGLSVKDTSYRRKSLSSCRCPIKEAVGKRLVYSSPMLPRLKIDRLVNTSIKALATELTKKVYSYREEERIPRTWNYRVDTGVD RKPGLWPPENRADNALLHNPLIRQERMGCSWLGAIFEWEGVIIEDNPDLERQAWLALSREEGKPTPPAFILRRVDGMKNEQAISEVLCWSRDPPEMKRMA TRKEEIYQSLQGGIYRLRTGSKEFVNILMHYKIPMALVSTRPRKTLESAIGTVGIEGYFTAIVAAEDVHRGKPDPEMFIYAAQLLNFIPQRCIVFGNSNQ TVEAAHDAFMKCVAIASKHPVYELGAADLVVRKLDELSIVDLKNLADIESPEFGPVELETELEPEEDNDRSTSAGVDDIFW

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G11570			Haloacid dehalogenase-like hyd...		Potri.003G127100 [exp]	0	1
AT3G15780			unknown protein		Potri.001G192500 [exp]	2.00	0.9592
AT4G04770		ABCI8, ATNAP1, ...	LONG AFTER FR, ARABIDOPSIS THA...		Potri.004G016900 [exp]	3.46	0.9637	Pt-LAF6.1
AT1G50020			unknown protein		Potri.009G084800 [exp]	4.24	0.9532
AT2G42975			unknown protein		Potri.002G058000 [exp]	9.79	0.9531
AT5G58760		DDB2	damaged DNA binding 2 (.1)		Potri.001G251000 [exp]	13.34	0.9077
AT2G31220	bHLH	bHLH010	basic helix-loop-helix (bHLH) ...		Potri.006G202100 [exp]	15.16	0.9469
AT4G37000		ATRCCR, ACD2	ARABIDOPSIS THALIANA RED CHLOR...		Potri.007G043600 [exp]	16.24	0.9468
AT1G69935		SHW1	short hypocotyl in white light...		Potri.008G190900 [exp]	17.46	0.9509
AT1G15140			FAD/NAD(P)-binding oxidoreduct...		Potri.010G116500 [exp]	18.33	0.9487
AT4G01940		ATCNFU1, NFU1	NFU domain protein 1 (.1)		Potri.014G117700 [exp]	21.44	0.9395

Compare expression of checked genes

Potri.003G127100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.