Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G11560 608 / 0 bromo-adjacent homology (BAH) domain-containing protein (.1) AT2G25120 243 / 1e-74 Bromo-adjacent homology (BAH) domain-containing protein (.1) AT4G23120 228 / 3e-69 Bromo-adjacent homology (BAH) domain-containing protein (.1) AT3G43990 194 / 6e-56 Bromo-adjacent homology (BAH) domain-containing protein (.1) AT3G48060 97 / 2e-20 BAH domain ;TFIIS helical bundle-like domain (.1) AT3G48050 97 / 2e-20 SUO 'shuttle' in chinese, BAH domain ;TFIIS helical bundle-like domain (.1.2) AT4G22140 62 / 1e-10 EBS EARLY BOLTING IN SHORT DAYS, PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.1), PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.2) AT4G04260 54 / 5e-08 Bromo-adjacent homology (BAH) domain-containing protein (.1) AT4G39100 45 / 2e-05 SHL1 short life, PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.1), PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G104300 [exp] 964 / 0 AT4G11560 607 / 0.0 bromo-adjacent homology (BAH) domain-containing protein (.1) Potri.003G127300 [exp] 226 / 2e-70 AT4G11560 207 / 3e-64 bromo-adjacent homology (BAH) domain-containing protein (.1) Potri.015G072900 [exp] 98 / 9e-21 AT3G48050 1311 / 0.0 'shuttle' in chinese, BAH domain ;TFIIS helical bundle-like domain (.1.2) Potri.015G072800 [exp] 97 / 1e-20 AT3G48050 1343 / 0.0 'shuttle' in chinese, BAH domain ;TFIIS helical bundle-like domain (.1.2) Potri.012G077700 [exp] 96 / 2e-20 AT3G48050 1343 / 0.0 'shuttle' in chinese, BAH domain ;TFIIS helical bundle-like domain (.1.2) Potri.012G077500 [exp] 94 / 1e-19 AT3G48050 1375 / 0.0 'shuttle' in chinese, BAH domain ;TFIIS helical bundle-like domain (.1.2) Potri.002G226000 [exp] 65 / 1e-11 AT4G22140 379 / 2e-135 EARLY BOLTING IN SHORT DAYS, PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.1), PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.2) Potri.014G157100 [exp] 61 / 2e-10 AT4G22140 385 / 7e-138 EARLY BOLTING IN SHORT DAYS, PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.1), PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.2) Potri.011G010901 [exp] 59 / 2e-09 AT4G22140 401 / 1e-143 EARLY BOLTING IN SHORT DAYS, PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.1), PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008527 [exp] 683 / 0 AT4G11560 596 / 0.0 bromo-adjacent homology (BAH) domain-containing protein (.1) Lus10008492 [exp] 659 / 0 AT4G11560 609 / 0.0 bromo-adjacent homology (BAH) domain-containing protein (.1) Lus10042137 [exp] 89 / 5e-18 AT3G48050 764 / 0.0 'shuttle' in chinese, BAH domain ;TFIIS helical bundle-like domain (.1.2) Lus10033410 [exp] 86 / 4e-17 AT3G48060 726 / 0.0 BAH domain ;TFIIS helical bundle-like domain (.1) Lus10020020 [exp] 61 / 3e-10 AT4G22140 375 / 7e-134 EARLY BOLTING IN SHORT DAYS, PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.1), PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.2) Lus10015543 [exp] 57 / 6e-09 AT4G22140 378 / 8e-135 EARLY BOLTING IN SHORT DAYS, PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.1), PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.2) Lus10041960 [exp] 48 / 7e-06 AT4G39100 291 / 7e-101 short life, PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.1), PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.2) Lus10028801 [exp] 48 / 7e-06 AT4G39100 324 / 1e-113 short life, PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.1), PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.2) Lus10017482 [exp] 46 / 3e-05 AT4G39100 326 / 2e-114 short life, PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.1), PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01426 [poplar] [flax] BAH BAH domain PF07500 [poplar] [flax] TFIIS_M Transcription factor S-II (TFIIS), central domain
Representative CDS sequence Show only first row Show all	>Potri.003G127400.1 pacid=42787347 polypeptide=Potri.003G127400.1.p locus=Potri.003G127400 ID=Potri.003G127400.1.v4.1 annot-version=v4.1 ATGGGAAACCGAAGATTCGCTCAAGTCTCCACCAGCGATGAAGAAGAGGAGGCGCCACCAAAGGCACCGTCATTATTAACAAAGACAAAGCCTGTAAACA ACAGCGAGATGGAGAGGAAGAGGAAGAAGATAGAGCTTCAAGAAGAAGAAGAAGTAGCAGTGACGAGAAGGAGAGGGAGACCGAGGAAGAAAGTAAGAGA GGAGAAATCGGAGGAGGAAGTAGAGGTGGAAGAGGTGCCGCAGGAGGATGCGAAGCCGGCTGGGGTATTGACTAGGGTTTCGGGGAAAGGGAGAGGGAGG AGAACTCATTTTGATGCTTTCGAGTTTGATGGGAATCGATATGAGCTCGAGGATCCTGTCCTTCTAGTTCCTGAAGATAAAGAGCAAAAACCTTATGTGG CAATTATCAAGGATATTTCTCAAACTAAGCACGGCAGCATGATGGTCACTGGGCAGTGGTTTTATCGCCCTGAGGAAGCTGAGAGAAAAGGTGGTGGAAG CTGGCAGTCACGTGATACTAGAGAGCTCTTTTATAGTTTTCATCATGATGAGGTTCCAGCAGAGTCTGTCATGCACAAGTGTGTTGTGCATTTTGTCCCA ATTCACAAACAGCTGCCAAATCGCAAACAATATCCTGGCTTTATTGTCCAGAAAGTGTATGACACTGTGGAGAGGAAGCTTTGGAAGCTTACTGACAAGG ATTATGAATATAATAAACAGCACGGGATTGATCTTCTTGTTCAGAAAACTCTATCAAGGATGGGAGACCTTCCTGACATTGAAATTGAAGATGCTCCCAC TGCTGCTCCTGAACAGGAAGATCCAGTAAAGGCAAAAAGAACTCTGAGGAGAAAGAATGTTTCACCTCTTGATGTGACCAGGGAGGAAGAAGCAACTGGC AGACCTGATAATTTAAAAGCTGAAACACCAGGAAGCTGCCCAAGTAATGATTCAGAATATCATGCCATCTTAGTAAAGTTTGATGCCCTGACTGGAGATA CCCTTCGAGACAAGTGGTTGGAGCGGCTTCTTCAGAGTATTCAATATATGTGCAGTTCTCCTAACTGCACACTTGATGATGGTAAGCTAAAAGGTGGTTC TGATGGTGGTGACCATAAAAAAGAGCAGAAGTCCCAGGGAGCTGCAAATGGATCCGAAGAAAATAGTGCGAAGGTTGGCAAGTCTTTTCCCTGGCTGGAT GCAGCTGTTCCTGCAGTAAGTGCTCTTGAGAAGGCCTCACATGATGCTCTTTCCTCTGATTTTCAGAAATATAATCAAAAGCTGCGCCAGCTAGCGTTCA ACCTCAAGAATAATGCATTTCTAGCCCGCCGTCTTCTAAACAAAGAGTTGGAACCCTCAAAAATGCTGAACATGTCACCAAATGAGTTGAAGGAGGGTTT AACAGCTGAGGAAACTGCAAAGAAGGAGCCTGATGAGTCAGAGCGCATGCAGATGACCGATGCTCGTTGCTCAAGATGCAGCGAGTTTAAAGTGCGACTA AGGGATGTAATCCAAGCAGGACATGGAGCCCGCTACCAGCTGGAGTGCATTGCGTGTGGCAATTCCTGGTATGCATCCAGGGATGAGGTATCTATGCTAT TAATAGACACCCCGAATTCTGCCAGAAGTGTAGGCACTGCACCATGGGCAACTGCCAAGTTTGATGAGGTTGAGAAGAAGCTAGTGAGTCCCTGTGAATC TGATAAGGCGACTGAATTCCTTAAGAAAACAAGTGAACCATACATGCCCGTGTTGGAAAACCAGAGATCATTTAGCAAGGTCAAGGTTGAAGAGAGTTCT GAAACTCAAAAGAATGCTGAATAA
AA sequence Show only first row Show all	>Potri.003G127400.1 pacid=42787347 polypeptide=Potri.003G127400.1.p locus=Potri.003G127400 ID=Potri.003G127400.1.v4.1 annot-version=v4.1 MGNRRFAQVSTSDEEEEAPPKAPSLLTKTKPVNNSEMERKRKKIELQEEEEVAVTRRRGRPRKKVREEKSEEEVEVEEVPQEDAKPAGVLTRVSGKGRGR RTHFDAFEFDGNRYELEDPVLLVPEDKEQKPYVAIIKDISQTKHGSMMVTGQWFYRPEEAERKGGGSWQSRDTRELFYSFHHDEVPAESVMHKCVVHFVP IHKQLPNRKQYPGFIVQKVYDTVERKLWKLTDKDYEYNKQHGIDLLVQKTLSRMGDLPDIEIEDAPTAAPEQEDPVKAKRTLRRKNVSPLDVTREEEATG RPDNLKAETPGSCPSNDSEYHAILVKFDALTGDTLRDKWLERLLQSIQYMCSSPNCTLDDGKLKGGSDGGDHKKEQKSQGAANGSEENSAKVGKSFPWLD AAVPAVSALEKASHDALSSDFQKYNQKLRQLAFNLKNNAFLARRLLNKELEPSKMLNMSPNELKEGLTAEETAKKEPDESERMQMTDARCSRCSEFKVRL RDVIQAGHGARYQLECIACGNSWYASRDEVSMLLIDTPNSARSVGTAPWATAKFDEVEKKLVSPCESDKATEFLKKTSEPYMPVLENQRSFSKVKVEESS ETQKNAE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G11560			bromo-adjacent homology (BAH) ...		Potri.003G127400 [exp]	0	1
AT5G64270			splicing factor, putative (.1)		Potri.017G050800 [exp]	2.00	0.8851
AT5G03340			ATPase, AAA-type, CDC48 protei...		Potri.012G088200 [exp]	2.23	0.8841
AT1G06230		GTE4	global transcription factor gr...		Potri.019G090700 [exp]	2.44	0.8980
AT3G48120			unknown protein		Potri.015G070100 [exp]	2.64	0.8799
AT1G06230		GTE4	global transcription factor gr...		Potri.013G118900 [exp]	2.82	0.9130
AT5G53150			DNAJ heat shock N-terminal dom...		Potri.001G057200 [exp]	5.09	0.8595
AT3G09670			Tudor/PWWP/MBT superfamily pro...		Potri.006G131800 [exp]	5.19	0.8688
AT5G27650			Tudor/PWWP/MBT superfamily pro...		Potri.005G026800 [exp]	7.93	0.8890
AT5G38600			Proline-rich spliceosome-assoc...		Potri.017G111300 [exp]	8.36	0.8670
AT5G06950	bZIP	TGA2, AHBP-1B	bZIP transcription factor fami...		Potri.016G036500 [exp]	9.16	0.8621

Compare expression of checked genes

Potri.003G127400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.