Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G11450 521 / 2e-176 Protein of unknown function (DUF3527) (.1) AT1G63520 221 / 2e-63 Protein of unknown function (DUF3527) (.1) AT5G59020 114 / 6e-26 Protein of unknown function (DUF3527) (.1) AT2G29510 114 / 8e-26 Protein of unknown function (DUF3527) (.1) AT2G33360 99 / 7e-22 Protein of unknown function (DUF3527) (.1), Protein of unknown function (DUF3527) (.2) AT5G01030 96 / 2e-20 Protein of unknown function (DUF3527) (.1), Protein of unknown function (DUF3527) (.2) AT1G04490 92 / 1e-19 Protein of unknown function (DUF3527) (.1), Protein of unknown function (DUF3527) (.2) AT2G37930 78 / 9e-15 Protein of unknown function (DUF3527) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G104200 [exp] 1207 / 0 AT4G11450 530 / 5e-180 Protein of unknown function (DUF3527) (.1) Potri.009G039300 [exp] 147 / 2e-36 AT5G59020 351 / 1e-107 Protein of unknown function (DUF3527) (.1) Potri.001G246200 [exp] 142 / 1e-34 AT5G59020 362 / 9e-112 Protein of unknown function (DUF3527) (.1) Potri.010G066200 [exp] 132 / 4e-32 AT2G33360 333 / 3e-106 Protein of unknown function (DUF3527) (.1), Protein of unknown function (DUF3527) (.2) Potri.008G171400 [exp] 128 / 9e-31 AT2G33360 327 / 1e-103 Protein of unknown function (DUF3527) (.1), Protein of unknown function (DUF3527) (.2) Potri.016G105500 [exp] 129 / 2e-30 AT5G01030 257 / 5e-73 Protein of unknown function (DUF3527) (.1), Protein of unknown function (DUF3527) (.2) Potri.006G093600 [exp] 117 / 8e-27 AT5G01030 219 / 6e-60 Protein of unknown function (DUF3527) (.1), Protein of unknown function (DUF3527) (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002006 [exp] 759 / 0 AT4G11450 477 / 3e-159 Protein of unknown function (DUF3527) (.1) Lus10035493 [exp] 736 / 0 AT4G11450 462 / 2e-151 Protein of unknown function (DUF3527) (.1) Lus10016455 [exp] 123 / 8e-29 AT5G59020 293 / 2e-87 Protein of unknown function (DUF3527) (.1) Lus10040721 [exp] 120 / 6e-28 AT5G59020 291 / 1e-86 Protein of unknown function (DUF3527) (.1) Lus10014479 [exp] 117 / 3e-27 AT2G33360 287 / 4e-91 Protein of unknown function (DUF3527) (.1), Protein of unknown function (DUF3527) (.2) Lus10017200 [exp] 110 / 2e-24 AT5G01030 229 / 4e-64 Protein of unknown function (DUF3527) (.1), Protein of unknown function (DUF3527) (.2) Lus10023729 [exp] 106 / 1e-23 AT2G33360 355 / 9e-115 Protein of unknown function (DUF3527) (.1), Protein of unknown function (DUF3527) (.2) Lus10021110 [exp] 102 / 5e-22 AT5G01030 291 / 1e-86 Protein of unknown function (DUF3527) (.1), Protein of unknown function (DUF3527) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0395 [poplar] [flax] Tubby_C PF12043 [poplar] [flax] DUF3527 Domain of unknown function (DUF3527)
Representative CDS sequence Show only first row Show all	>Potri.003G127500.3 pacid=42785119 polypeptide=Potri.003G127500.3.p locus=Potri.003G127500 ID=Potri.003G127500.3.v4.1 annot-version=v4.1 ATGGAACTGGAGATGGAGTTGGATTCTGAGAAGAGTAGCACCTCAGATCTGAGTCCTAATACTGTTCTTCCGCATCGACGTTGCTCAAAAGCAGAAAAGA GAAATGCAAATGGCAAACTCACACGTAAAGATGATATTTTGAGGATGAAGGAGGGCTTCACTGACATTAGCTTCCGTCATTACCGTAGTTCCTCTTGTAA GAATGTTCCATCTAGACCTGTCGGTCTACAAGGTAACATAGAGCTGAAGCGAGGCTCCATATATCAAAGCTCCAGAGAAGTAAGGAGAACGAAGGAAATG GGTTCTAATGGGGGGAGGAGAACAATTGAACTTTCCCGTGCTAGTGACACCTCATTTTCTTTCAGGATTGTTGACTCTCTGTGTAGCTTAGATGAAGAGA GCATGCCGAAGAGATCTCTTGCAAGCTCTGTAAACTCAAACTCGAATTCTAAGTTTGTTCGAAGACCTTGTGTAGAACCACGCTCATCAGATGACTTCAT TGAAATCTGTCCAAATTTGGATAAGAGAGACAAACATTCTGTTGGAGCTGTACGGAGTGACTCGATTGGGAATCCAAACTTCAAATGCGAAAAGGTGGTT GGTCCACTAAATGATGGAAATGAACTTCTGGAAAGAGATACAGCTCTGACATACCACCAACCAGTCTGTGCTAAGGTAGAAATGCCCTGTTCACCTTGTT CTTCAGAAAGCGATTTCTCTACTCGAGCCATCTCAGAGTCCCAATTTAGTCCCATCCGAAAGATGTTCGATCCATTCACAAAATCAAAGTCTATCCGCAG TCCGTTTTGTCATGTACCTGAACCAAGTGATGCCGAAACCACTGGGATGTCAAACATGGGAAGGAATCAGACATTTCGGAGATCTTTGTTCCATGACTTT TCACATACAGCTCAGAAATCAGATTTTGGTTCTCAGAATGTCAAGAAAGATCACCATCATTCAGCTGTAGTGTGTTCACCAGTTCACCTACATGGTTGTC TGAAGATGGAAATTAAGCACGGGGTGCCTTTTTTCGAGTTCTCATTGAATCGCCCTGAAGAAGTTCTGGTGGCTAAGACATGGAAAGCAAATAATGCATT TAACTGGGTCTATACATTTCACTCCATTTCTAATAGAAAAAAGAGCAACGCCACAGGACGGGGGTTGAGTGATGGAAATAAGGAATCGTCGGTGGTGGGG CAGATGCAAGTTTCATGTTATTTATGTTCAGAATTAAAAGATGGGGGGAACTTTGACAACTCTCTGGTGACAGAGTTTGTGTTGTACGATAATGTCCATG CAAGACAAAGAGTTTCTACTGAAGAATCCCCTGGAGTTAGACCTGACATAGGTGCCAAACCAGGCTTGGTTGGTGGAAGTCATGAGATGGATGGCAACTC TGATGCAGCGAAGTTCAAACATCAACCTCAACATGCTTTTGATAGAGGCGACCTTGATTCTTCCAATCCTTATCCATGGGCAGCTGCAGTTTTGCATCCA GACCTCGAAATAGCAGCCGTTGTTATTAAACTCCCATTTGCAAAGAGAGAGAGCCTGAAATACAAAAGGGGGGACAAGGGTAGTGATAAAATGCATTCGA ATCTGCTCAACCTTTCTGTTGGCGAGCAAAGGATGAAAACTATCCGTGATGAAGAAAATCAAGAGAAGGTGAAGGTGGTGATTCCAACTGGAAAACATAG TTTGCCAAGGGGTGATGGTCGGGGTCCTTCTTCATTGCTTGAAAGATGGAGATCTGGTGGAGGCTGTGACTGTGGTGGCTGGGATATGGCCTGTCCCCTT ACAGTTTTTGGCAATCCAGGCATCCAATGTGCTGAAGACGAACCACTCTTGGATAATCAGCGGCCTTTGGAACTTTTTCTTCAGGGAATGAAAGAGAATA ATATACCAGCAATGACCATGACTGTTCTTGAAGAGGGTCAGTATGCTGTTGATTTCCATGCACAATTATCCACATTACAAGCATTTTCCATCTGTGTTGC CGTATTGCATGGTACAAAAGCCACTGGTGTGACTGGAGAGGAAAGAGGCAATCGGTTATCACATTGCAATTCACTGAAAATGCTTATGGAGGAGGAAGTG AAGTTCTTCATTGAATCAGTCACTGAGGAGGAGAAAAGGAAAGCATCCAAGAAAGTGGAAGGGATCAAGCAATCTTACGTGCTTAACCCTCCCTTTTCTC CAATTGCTCGGGTATAG
AA sequence Show only first row Show all	>Potri.003G127500.3 pacid=42785119 polypeptide=Potri.003G127500.3.p locus=Potri.003G127500 ID=Potri.003G127500.3.v4.1 annot-version=v4.1 MELEMELDSEKSSTSDLSPNTVLPHRRCSKAEKRNANGKLTRKDDILRMKEGFTDISFRHYRSSSCKNVPSRPVGLQGNIELKRGSIYQSSREVRRTKEM GSNGGRRTIELSRASDTSFSFRIVDSLCSLDEESMPKRSLASSVNSNSNSKFVRRPCVEPRSSDDFIEICPNLDKRDKHSVGAVRSDSIGNPNFKCEKVV GPLNDGNELLERDTALTYHQPVCAKVEMPCSPCSSESDFSTRAISESQFSPIRKMFDPFTKSKSIRSPFCHVPEPSDAETTGMSNMGRNQTFRRSLFHDF SHTAQKSDFGSQNVKKDHHHSAVVCSPVHLHGCLKMEIKHGVPFFEFSLNRPEEVLVAKTWKANNAFNWVYTFHSISNRKKSNATGRGLSDGNKESSVVG QMQVSCYLCSELKDGGNFDNSLVTEFVLYDNVHARQRVSTEESPGVRPDIGAKPGLVGGSHEMDGNSDAAKFKHQPQHAFDRGDLDSSNPYPWAAAVLHP DLEIAAVVIKLPFAKRESLKYKRGDKGSDKMHSNLLNLSVGEQRMKTIRDEENQEKVKVVIPTGKHSLPRGDGRGPSSLLERWRSGGGCDCGGWDMACPL TVFGNPGIQCAEDEPLLDNQRPLELFLQGMKENNIPAMTMTVLEEGQYAVDFHAQLSTLQAFSICVAVLHGTKATGVTGEERGNRLSHCNSLKMLMEEEV KFFIESVTEEEKRKASKKVEGIKQSYVLNPPFSPIARV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G11450			Protein of unknown function (D...		Potri.003G127500 [exp]	0	1
AT5G22300		AtNIT4, NIT4	nitrilase 4 (.1)		Potri.006G207700 [exp]	1.73	0.8884
AT1G79910			Regulator of Vps4 activity in ...		Potri.003G054700 [exp]	2.82	0.8603
AT1G21740			Protein of unknown function (D...		Potri.002G082000 [exp]	3.46	0.8577
AT1G53860			Remorin family protein (.1)		Potri.001G163000 [exp]	4.47	0.8578
AT3G44820			Phototropic-responsive NPH3 fa...		Potri.004G189800 [exp]	5.00	0.8257
AT1G67280			Glyoxalase/Bleomycin resistanc...		Potri.006G239802 [exp]	5.65	0.8543
AT2G01950		VH1, BRL2	VASCULAR HIGHWAY 1, BRI1-like ...		Potri.008G140500 [exp]	6.92	0.8418
AT3G11980		FAR2, MS2	MALE STERILITY 2, FATTY ACID R...		Potri.016G031600 [exp]	8.66	0.8622
AT1G71090			Auxin efflux carrier family pr...		Potri.008G127700 [exp]	12.84	0.8431
AT1G68410			Protein phosphatase 2C family ...		Potri.010G121600 [exp]	14.14	0.8125

Compare expression of checked genes

Potri.003G127500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.