Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G11440 437 / 3e-146 Mitochondrial substrate carrier family protein (.1) AT1G34065 143 / 1e-37 SAMC2 S-adenosylmethionine carrier 2 (.1) AT4G39460 142 / 2e-37 SAMC1, SAMT1 SAM TRANSPORTER1, S-adenosylmethionine carrier 1 (.1.2) AT2G35800 132 / 7e-32 SAMTL S-adenosyl methionine transporter-like, mitochondrial substrate carrier family protein (.1) AT1G74240 127 / 7e-32 Mitochondrial substrate carrier family protein (.1) AT1G07030 122 / 1e-30 Mitochondrial substrate carrier family protein (.1) AT5G42130 123 / 3e-30 AtMfl1 MitoFerrinLike1, Mitochondrial substrate carrier family protein (.1) AT2G30160 117 / 9e-29 Mitochondrial substrate carrier family protein (.1) AT5G15640 101 / 3e-23 Mitochondrial substrate carrier family protein (.1) AT4G32400 100 / 2e-22 EMB42, EMB104, ATBT1, SHS1 SODIUM HYPERSENSITIVE 1, EMBRYO DEFECTIVE 42, EMBRYO DEFECTIVE 104, ARABIDOPSIS THALIANA BRITTLE 1, Mitochondrial substrate carrier family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G197200 [exp] 149 / 5e-40 AT4G39460 417 / 3e-147 SAM TRANSPORTER1, S-adenosylmethionine carrier 1 (.1.2) Potri.005G085900 [exp] 147 / 2e-39 AT4G39460 487 / 9e-175 SAM TRANSPORTER1, S-adenosylmethionine carrier 1 (.1.2) Potri.005G189600 [exp] 133 / 8e-34 AT5G42130 542 / 0.0 MitoFerrinLike1, Mitochondrial substrate carrier family protein (.1) Potri.009G077600 [exp] 132 / 8e-34 AT1G07030 425 / 4e-150 Mitochondrial substrate carrier family protein (.1) Potri.001G282400 [exp] 130 / 3e-33 AT1G07030 426 / 1e-150 Mitochondrial substrate carrier family protein (.1) Potri.012G066000 [exp] 121 / 4e-30 AT1G74240 446 / 6e-158 Mitochondrial substrate carrier family protein (.1) Potri.016G125200 [exp] 121 / 5e-30 AT1G07030 436 / 1e-154 Mitochondrial substrate carrier family protein (.1) Potri.008G043700 [exp] 116 / 1e-26 AT2G35800 1044 / 0.0 S-adenosyl methionine transporter-like, mitochondrial substrate carrier family protein (.1) Potri.010G217900 [exp] 115 / 2e-26 AT2G35800 1040 / 0.0 S-adenosyl methionine transporter-like, mitochondrial substrate carrier family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005787 [exp] 156 / 2e-42 AT4G39460 494 / 2e-177 SAM TRANSPORTER1, S-adenosylmethionine carrier 1 (.1.2) Lus10006812 [exp] 149 / 1e-39 AT4G39460 478 / 6e-171 SAM TRANSPORTER1, S-adenosylmethionine carrier 1 (.1.2) Lus10026395 [exp] 136 / 2e-35 AT2G30160 483 / 5e-173 Mitochondrial substrate carrier family protein (.1) Lus10042258 [exp] 134 / 1e-34 AT2G30160 484 / 2e-173 Mitochondrial substrate carrier family protein (.1) Lus10029770 [exp] 135 / 2e-34 AT5G42130 478 / 5e-169 MitoFerrinLike1, Mitochondrial substrate carrier family protein (.1) Lus10017849 [exp] 123 / 1e-30 AT1G74240 430 / 6e-151 Mitochondrial substrate carrier family protein (.1) Lus10023493 [exp] 121 / 2e-28 AT2G35800 1056 / 0.0 S-adenosyl methionine transporter-like, mitochondrial substrate carrier family protein (.1) Lus10040375 [exp] 120 / 5e-28 AT2G35800 1066 / 0.0 S-adenosyl methionine transporter-like, mitochondrial substrate carrier family protein (.1) Lus10021497 [exp] 93 / 4e-20 AT3G53940 496 / 2e-177 Mitochondrial substrate carrier family protein (.1) Lus10012597 [exp] 94 / 5e-20 AT5G15640 488 / 9e-173 Mitochondrial substrate carrier family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00153 [poplar] [flax] Mito_carr Mitochondrial carrier protein
Representative CDS sequence Show only first row Show all	>Potri.003G127600.1 pacid=42787144 polypeptide=Potri.003G127600.1.p locus=Potri.003G127600 ID=Potri.003G127600.1.v4.1 annot-version=v4.1 ATGTATGGGGGCAAAAGGCCTGGTAGAGGTAATCACCCTCCTTCAATTACTTACAAGAGGAATCGAAATGGGGGAATGCCTTTTGACCTTGCTGATTTTG TCCATGATGGACATTCCCCTTCCATTTCTGAGAATAATAAGCCAAATGACATAAAATCTGGAACTTCGTCGCCAGAAATATTCAGCACGACTGAGCTTGT CTCAGCAGTTGGGCAGGTTTGGAATCTTTTGAATCCTTGCGCCGTTCCTGAAACCAAGGAACAGAAAAATGTTATCTTGAATGATCTGAATGGGGCAGGA GCTGGCGGGGCAGCTATTCTAGATGATAATACTAAATACTTTTGTGTTGATATAAGGAATGGTAGCCATGTTACACAGATGGTGCAGCCACAGTTTGAGT TTCTTAAAGTAACTAAGAAGATGTTGGTGTTTGAACCTTCTAGTGAAAATTACAGCCGGTCACTGTTCTGGCGGTTTTTGAAGAGAGGTACCAGCTCGCG GAATGAGTCTCGGGAGGGAAAAGGTCTTGCAACTGTGGGTACTGGATATGAATTGGATAAGATATATGGATGGATGAAGGAACTGATTCCTGCTGGTTCA AAATATCCTGCAAATAACAGCACAGAAGGTTGCATTGCCAGAGATCGTCCAACTAACCCTGCAAATAACTTAGCTTCTAAAACCGCTGACTGTTATTCTG ATTCAGTCGAATCAAAAGAGGTATCATTGTGCGATAATGCAAGAGTAGTAACTATAGGAAAATCCAGCTCTGTATCCTCTGACTATTTCCTTGGGGCTCT CCATGATTTTAATGCCAATAGTAGTGCTTCAAGAGCTCTAAATTATGTTCTTTGCGCAGATTATCATATTAATTGTTTAGCTCCATGTAAGAGTACATAT GAACATTTTGAAAATGACATTGGTGATTTTGATGTACCTAAAAATTCAAGAGAACAACCTCAAAATCTGGTCACTCAGGGCAGAACTGGAATACAAATTC AGTCATCAGCATGCGAAAGACCTCAGTATGCCTTAGCTAAGCAAGAGCATGCTTTTGCGGGTGCATTTGCTGGTATTTTTGTTAGCCTTTCTCTGCATCC TATAGATACAGTAAAGACAATCATCCAATCTTGCCCTGCAGAACAGAAGTCTGTCTCCTTCATTGGAAGATCAATTGTTTCTGAAAGAGGCATGACTGGG CTTTATCGTGGAATAGGTAGCAATATTGCATCGTCAGCTCCAATTTCTGCCATTTACACTTTTACATATGAATCAGTTAAAGGATCTTTGCTTCCTCATT TTCCCAAGGAACATCATTCTTTTGCCCATTGCATTGCAGGCGGTTGTGCAAGCATTGCAACTTCCTTTGTTTTTACTCCCAGTGAACGTATAAAGCAGCA GATGCAAATTGGTTCACACTATAACAATTGCTGGAGTGCACTGGTTGGAATAATTGGAAAAGGTGGTTTTCACTCGTTGTATGCAGGTTGGGGAGCTGTA CTCTGTCGGAACATTCCACAGTCAGTGATCAAGTTTTACACATATGAAAGCTTGAAGCCGTTGGTGCTGTCATCTCAAAATTCCAGTGCTCAACCCAATA CATTACAAACGCTAGTTTGCGGAGGATTAGCAGGATCTACTGCAGCCTTATTTACAACTCCTTTTGATGTGGTGAAGACAAGATTGCAGACGCAGATTCC TGGATCCATGAGCCCATATGGAAACGTATTTCATGCACTTCAAGAAATAGGCAAGAATGAAGGTTTGAAGGGCCTCTATAGGGGATTAACTCCGAGATTG GTTATGTACATGTCTCAAGGAGCACTATTCTTTGCATCATATGAATTTTTGAAAAGATTATTTTCTTTGGAGATGCCACAGTTTAGTGCTTAA
AA sequence Show only first row Show all	>Potri.003G127600.1 pacid=42787144 polypeptide=Potri.003G127600.1.p locus=Potri.003G127600 ID=Potri.003G127600.1.v4.1 annot-version=v4.1 MYGGKRPGRGNHPPSITYKRNRNGGMPFDLADFVHDGHSPSISENNKPNDIKSGTSSPEIFSTTELVSAVGQVWNLLNPCAVPETKEQKNVILNDLNGAG AGGAAILDDNTKYFCVDIRNGSHVTQMVQPQFEFLKVTKKMLVFEPSSENYSRSLFWRFLKRGTSSRNESREGKGLATVGTGYELDKIYGWMKELIPAGS KYPANNSTEGCIARDRPTNPANNLASKTADCYSDSVESKEVSLCDNARVVTIGKSSSVSSDYFLGALHDFNANSSASRALNYVLCADYHINCLAPCKSTY EHFENDIGDFDVPKNSREQPQNLVTQGRTGIQIQSSACERPQYALAKQEHAFAGAFAGIFVSLSLHPIDTVKTIIQSCPAEQKSVSFIGRSIVSERGMTG LYRGIGSNIASSAPISAIYTFTYESVKGSLLPHFPKEHHSFAHCIAGGCASIATSFVFTPSERIKQQMQIGSHYNNCWSALVGIIGKGGFHSLYAGWGAV LCRNIPQSVIKFYTYESLKPLVLSSQNSSAQPNTLQTLVCGGLAGSTAALFTTPFDVVKTRLQTQIPGSMSPYGNVFHALQEIGKNEGLKGLYRGLTPRL VMYMSQGALFFASYEFLKRLFSLEMPQFSA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G11440			Mitochondrial substrate carrie...		Potri.003G127600 [exp]	0	1
AT5G60230		ATSEN2, SEN2	splicing endonuclease 2 (.1.2)		Potri.014G083401 [exp]	13.26	0.7387
AT5G58450			Tetratricopeptide repeat (TPR)...		Potri.013G152800 [exp]	21.90	0.7263
AT4G17150			alpha/beta-Hydrolases superfam...		Potri.006G000700 [exp]	27.98	0.7234
AT5G46070			Guanylate-binding family prote...		Potri.017G016800 [exp]	28.46	0.7811
AT1G05410			Protein of unknown function (D...		Potri.010G086600 [exp]	29.39	0.7354
AT3G07060		EMB1974	embryo defective 1974, NHL dom...		Potri.002G241366 [exp]	33.94	0.7737
AT4G21530		APC4	anaphase promoting complex 4, ...		Potri.004G034900 [exp]	41.95	0.7750
AT2G39090		APC7, AtAPC7	anaphase-promoting complex 7, ...		Potri.008G215100 [exp]	45.59	0.7512
					Potri.002G067900 [exp]	49.47	0.7368
AT1G17960			Threonyl-tRNA synthetase (.1)		Potri.010G096550 [exp]	51.96	0.7698

Compare expression of checked genes

Potri.003G127600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.