Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G63640 1065 / 0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1), P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.2) AT5G41310 816 / 0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) AT1G73860 712 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G18410 681 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G44730 557 / 2e-180 AtKIN14h, ATKP1 ARABIDOPSIS KINESIN-LIKE PROTEIN 1, kinesin-like protein 1 (.1) AT2G47500 525 / 2e-169 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) AT5G27000 523 / 2e-168 KATD, ATK4 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA D, kinesin 4 (.1) AT1G09170 470 / 4e-148 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) AT3G10310 427 / 8e-133 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) AT1G72250 340 / 5e-99 Di-glucose binding protein with Kinesin motor domain (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G104000 [exp] 1765 / 0 AT1G63640 1102 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1), P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.2) Potri.015G047400 [exp] 949 / 0 AT1G63640 908 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1), P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.2) Potri.012G056700 [exp] 912 / 0 AT1G63640 857 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1), P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.2) Potri.001G467600 [exp] 587 / 0 AT3G44730 1266 / 0.0 ARABIDOPSIS KINESIN-LIKE PROTEIN 1, kinesin-like protein 1 (.1) Potri.011G165200 [exp] 578 / 0 AT3G44730 1300 / 0.0 ARABIDOPSIS KINESIN-LIKE PROTEIN 1, kinesin-like protein 1 (.1) Potri.005G021100 [exp] 541 / 7e-175 AT2G47500 1051 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) Potri.013G011500 [exp] 539 / 6e-174 AT5G27000 1081 / 0.0 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA D, kinesin 4 (.1) Potri.014G125700 [exp] 534 / 2e-172 AT2G47500 1218 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) Potri.002G201000 [exp] 528 / 4e-170 AT2G47500 1237 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024628 [exp] 1095 / 0 AT1G63640 980 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1), P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.2) Lus10032264 [exp] 1086 / 0 AT1G63640 991 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1), P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.2) Lus10002007 [exp] 1083 / 0 AT1G63640 941 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1), P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.2) Lus10032897 [exp] 585 / 0 AT3G44730 1302 / 0.0 ARABIDOPSIS KINESIN-LIKE PROTEIN 1, kinesin-like protein 1 (.1) Lus10029865 [exp] 531 / 2e-171 AT5G27000 1014 / 0.0 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA D, kinesin 4 (.1) Lus10015212 [exp] 522 / 3e-169 AT5G27000 924 / 0.0 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA D, kinesin 4 (.1) Lus10001306 [exp] 520 / 2e-166 AT3G44730 1240 / 0.0 ARABIDOPSIS KINESIN-LIKE PROTEIN 1, kinesin-like protein 1 (.1) Lus10009851 [exp] 508 / 7e-163 AT2G47500 1245 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) Lus10018049 [exp] 473 / 4e-149 AT5G27000 874 / 0.0 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA D, kinesin 4 (.1) Lus10042045 [exp] 466 / 1e-146 AT3G10310 863 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00225 [poplar] [flax] Kinesin Kinesin motor domain CL0188 [poplar] [flax] CH PF00307 [poplar] [flax] CH Calponin homology (CH) domain
Representative CDS sequence Show only first row Show all	>Potri.003G127800.4 pacid=42787040 polypeptide=Potri.003G127800.4.p locus=Potri.003G127800 ID=Potri.003G127800.4.v4.1 annot-version=v4.1 ATGAGTGCTTCGCCAGAAAGGAGCTTGAGCGAAAATGGGAGATATGACAGCTCAAATGGAGCTCATGCTGATGTTAATATTCAATCAGTGATTGAGTGGT TAAACCGTTCGCTACCTCATTTAAATTTGCCAACGGATGCGTCGGAGGAGAAACTGAGAGCATACTTGATTGATGGCACTGTCTTGTGTAACATTCTGGA CAAGCTCTGTCCTGGTTTAGTTGAAATGAGAGGCAATTCTAAACCTGGACCAGAAAATATCCGAAAGTTTTTAGCAGCGATGGATGAAATTGCATTGCCT AGGTTTGTACTTGCTGACATACAGGAGGGATACATGGAACCGGTTCTGCAGTGCCTTGGGACACTTAAAACTCATTTTGAGTTTACTGGTGGGAAAGAAA GCATCCGTGAACATCTAAGAAGAAGATGGAATCTACCGAAGGTAGAATTTTCAGAGGGAATCACTAACTCGCTAGTGTACACAGCAACATGCGATGAAAA CCCTGCCATAAATGGAGACGAGAGGCAACAAGATTCTTTTGAGAACAAATATGGAAGCAGCTTGGATGATTCTATCTCTTCAGAGTCTGCTGCTTTGGCG CATGATGCTGCACACAAGTTATCTGAGATGTTCCAACAAAAGCAAGGGTCCTATGCTGATCTTTCAGATTCCAATATCTTGGAATTGATGAAATCAAATG GGTTCGATCAGAATGCCTCTACTCGAACATTGTTCAGCTTAGTGAACAGAATTCTGGAAGAAAACATTGAAAGAAAGAATGGGCATGTCCATCATATGGC TCTTATATTGAAGAAAGTTGTGCAAGTTATTGAACATCGGGTTTCAACCCAAGCAGTGAACTTGAAAGATCTAAACAATCTTTATGAGGTTCACTTGGGA AAGTGCCAATCACGAATAAAAGTTCTAGAGACCCTTGCAGCTGGAACCACAGAAGAAATTCAGGTTTTGTTGTCAAAGCTGCAACAAATCAAGATTGAGA AAACTAAAATAGAGAAAAAGAAAAAGCTTGAAGAGCAGGAACTACTTAGAACAAGGCAAGAGAGAATCCACAGTGATATTGAGAACTCCACGCTGAAACA TGAACTAGAAATAGCCAAGACGGCGCATGAAGAGCACTGCTTGCTATTGCAAATGCGGGCTGAGGAAACTAAAGTTCAATTGGAGAAGAAATTAATGGAA TTCAAATGTTTTTTAACAGAATCAAAGGAGAGGGTGAAGGAGCTCGAGTCATTTTCTGAATCTAAATATCAGAGGTGGAAAAGCAAAGAGGGCACCTATA AAAGCTTCATAGATTATCAATCTAGAGCTTTACAGGAATTAAGGGGAGCTTCTGACTTTCTAAAACACGAGATCTTGAAGACCAAAAGGAGTTACGCTGA GGAATTTAATTTCCTGGGCGTGAAGCTTAAAGGACTAGTTGACGCTGCTGCAAATTATCATTCTGTTCTTGCAGAAAATCGAAGATTGTACAATGAGGTT CAGGATTTGAAAGGCAATATTAGAGTGTATTGTCGAATAAGGCCATTCCTTCCTGGACAATCTAAGAAGCGAACAACAGTAGAATATATTGGAGAAAATG GTGAATTGGTTATTTCGAATCCCTCAAAACAAGGAAAAGACAGTCATAGGCTCTTCAAATTTAACAAGGTTTTTGGCCCAGCAGCTACTCAAGAGGAGGT GTTTTTAGATACCCAACCACTAATTCGGTCTGTCCTTGATGGATACAATGTATGTATATTTGCATATGGTCAAACGGGCTCAGGAAAGACCTATACAATG AGTGGGCCTAATATAACATCACAAGAAGATTGGGGGGTCAATTACCGAGCACTGCATGATCTTTTCCAGATCTCTCAGCACAGGAAAAGCTCCATCTCAT ATGAAGTTGGAGTTCAAATGGTTGAAATTTACAATGAGCAAGTTCGTGATTTACTCTCAAGTGATGGTCCTCACAAAAGACTTGGGATTTGGAGCACAAC CCAACCAAATGGTTTGGCTGTCCCTGATGCCAGCATGCATGCGGTTACATCAACTGCAGATGTGTTAGAATTAATGAACATTGGCTTAATGAACCGTGCA GTGGGTGCTACAGTTCTAAATGAAAGAAGTAGTAGATCCCACAGTGTTCTCACTGTTCATGTCTATGGCATGGATTTAGAAACTGGTGCTGTTTTACGTG GCAACCTACATTTGGTTGATCTTGCTGGTAGTGAAAGAGTGGATAGATCTGAAGCTATTGGAGAGAGGTTGAGGGAAGCACAACATATTAACAAATCACT ATCCGCCCTTGGGGATGTAATATTTTCCTTAGCACAAAAGAGTCAGCATGTGCCATTCAGAAATAGCAAACTAACTCAAGTGCTTCAAAGTTCGTTAGGC GGTCAAGCAAAGACCCTTATGTTTGTGCAGCTTAATCCTGACGTAGATTCCTATTCTGAAACTGTAAGTACTTTGAAGTTTGCTGAGAGGGTTTCAGGGA TTGAGTTGGGTGCTGCAAAGAGCAATAAAGAGGGAAGAAATACAAGAGAACTTATGGAGCAGACATTCAAGTGGATAGGGGTTGCGTTCCTCAAAGACAC AATTTCAAGGAAAGATGAAGTGATTGAGCGGTTGCAGCAGCTCAAGGCGAATGTCAATGGTGTGAAGTGTGGTATGAATTCACATGGGTATGATTCTTCT TCTCCAAGAAGATATTCAAATGGGACTGCACTACATAGCCCTAGGCTCTCAGGAAGGAAAGGTTCAAGACTTTTTGAGAAAGCATCTTCTGATACAGACA ACTGCTCAGAGCACAGTGAAAGACGCTCTGAAGCTGGTTCTGCACAGTCAATGGATAACTTTCAACATAAAAAAATGTTGCTTCCACAGTCAAAGTCAAA GGATGACTTGACACTCAAGAAAGAATTTGTCTCTCGGCCAAATTTTGTCGGAACATGTTTGTCTCATAAAGATAAAGAAGACCTTGATCTCTTGGGCTTT GGAGATGCAGATTCTGATGAGCGATTAAGTGACATATCTGATGGTTGTCTTTCAAGAGCTGAAACTGAAGGCTCTCTGGGTAGTGCAGTAGAGTTCACTC TTTTCCCTGAATCTAAACCATCTGAAGCTACAAAACCAGTTGAAGTTGCAAAACCGGTTGAAGCTGCAAAACCAGCCAGGAAGGCTGCGAACAAGAACAG ACCGAGTTTCGTATCTAGGCTTCCTAAGCCTTCACAAAAGCTGGCACAAACAAGATTACCTCGTCTGTCAACGACTATCAGCTCTGCATCTAAGGCTTCA TCAAGTATGTCAGCAGCCAGGAAACCTCCTGCAAGCAGTTTCTCTGCAACCAAGCCGGTGAAACAATGGCACTAA
AA sequence Show only first row Show all	>Potri.003G127800.4 pacid=42787040 polypeptide=Potri.003G127800.4.p locus=Potri.003G127800 ID=Potri.003G127800.4.v4.1 annot-version=v4.1 MSASPERSLSENGRYDSSNGAHADVNIQSVIEWLNRSLPHLNLPTDASEEKLRAYLIDGTVLCNILDKLCPGLVEMRGNSKPGPENIRKFLAAMDEIALP RFVLADIQEGYMEPVLQCLGTLKTHFEFTGGKESIREHLRRRWNLPKVEFSEGITNSLVYTATCDENPAINGDERQQDSFENKYGSSLDDSISSESAALA HDAAHKLSEMFQQKQGSYADLSDSNILELMKSNGFDQNASTRTLFSLVNRILEENIERKNGHVHHMALILKKVVQVIEHRVSTQAVNLKDLNNLYEVHLG KCQSRIKVLETLAAGTTEEIQVLLSKLQQIKIEKTKIEKKKKLEEQELLRTRQERIHSDIENSTLKHELEIAKTAHEEHCLLLQMRAEETKVQLEKKLME FKCFLTESKERVKELESFSESKYQRWKSKEGTYKSFIDYQSRALQELRGASDFLKHEILKTKRSYAEEFNFLGVKLKGLVDAAANYHSVLAENRRLYNEV QDLKGNIRVYCRIRPFLPGQSKKRTTVEYIGENGELVISNPSKQGKDSHRLFKFNKVFGPAATQEEVFLDTQPLIRSVLDGYNVCIFAYGQTGSGKTYTM SGPNITSQEDWGVNYRALHDLFQISQHRKSSISYEVGVQMVEIYNEQVRDLLSSDGPHKRLGIWSTTQPNGLAVPDASMHAVTSTADVLELMNIGLMNRA VGATVLNERSSRSHSVLTVHVYGMDLETGAVLRGNLHLVDLAGSERVDRSEAIGERLREAQHINKSLSALGDVIFSLAQKSQHVPFRNSKLTQVLQSSLG GQAKTLMFVQLNPDVDSYSETVSTLKFAERVSGIELGAAKSNKEGRNTRELMEQTFKWIGVAFLKDTISRKDEVIERLQQLKANVNGVKCGMNSHGYDSS SPRRYSNGTALHSPRLSGRKGSRLFEKASSDTDNCSEHSERRSEAGSAQSMDNFQHKKMLLPQSKSKDDLTLKKEFVSRPNFVGTCLSHKDKEDLDLLGF GDADSDERLSDISDGCLSRAETEGSLGSAVEFTLFPESKPSEATKPVEVAKPVEAAKPARKAANKNRPSFVSRLPKPSQKLAQTRLPRLSTTISSASKAS SSMSAARKPPASSFSATKPVKQWH

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G63640			P-loop nucleoside triphosphate...		Potri.003G127800 [exp]	0	1
AT3G24495		ATMSH7, MSH7, M...	MUTS HOMOLOG 6-2, ARABIDOPSIS ...		Potri.006G156314 [exp]	2.64	0.9106
AT3G24495		ATMSH7, MSH7, M...	MUTS HOMOLOG 6-2, ARABIDOPSIS ...		Potri.006G159200 [exp]	3.46	0.9075
AT1G49730			Protein kinase superfamily pro...		Potri.004G140301 [exp]	6.32	0.8826
AT3G53320			unknown protein		Potri.016G085600 [exp]	6.78	0.9093
AT5G16150		PGLCT, GLT1	GLUCOSE TRANSPORTER 1, plastid...		Potri.017G116400 [exp]	9.16	0.8554
AT4G19020		CMT2	chromomethylase 2 (.1)		Potri.003G100000 [exp]	12.00	0.8625
AT1G04730		CTF18	CHROMOSOME TRANSMISSION FIDELI...		Potri.001G050300 [exp]	15.19	0.8733
AT1G04160		XI-B, XI-8, ATX...	MYOSIN XI-8, ARABIDOPSIS THALI...		Potri.002G254300 [exp]	15.23	0.8467	XIB.1
AT5G05240			Uncharacterised conserved prot...		Potri.013G157700 [exp]	18.33	0.8592
AT2G19520		ATMSI4, ACG1, N...	MULTICOPY SUPPRESSOR OF IRA1 4...		Potri.003G038800 [exp]	18.73	0.8387	Pt-ATMSI4.2,NFC907

Compare expression of checked genes

Potri.003G127800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.