Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	2OGox5
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G23340 457 / 3e-163 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT5G51310 367 / 2e-127 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G55290 144 / 4e-40 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G80330 140 / 5e-39 ATGA3OX4 ARABIDOPSIS THALIANA GIBBERELLIN 3-OXIDASE 4, gibberellin 3-oxidase 4 (.1) AT1G52820 137 / 9e-38 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G51810 132 / 2e-35 AT2353, GA20OX2, ATGA20OX2 gibberellin 20 oxidase 2 (.1) AT3G13610 132 / 2e-35 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G60980 129 / 1e-34 ATGA20OX4 gibberellin 20-oxidase 4 (.1) AT5G07200 129 / 3e-34 ATGA20OX3, YAP169 ARABIDOPSIS THALIANA GIBBERELLIN 20-OXIDASE 3, gibberellin 20-oxidase 3 (.1) AT1G15550 128 / 3e-34 ATGA3OX1, GA4 GA REQUIRING 4, ARABIDOPSIS THALIANA GIBBERELLIN 3 BETA-HYDROXYLASE 1, gibberellin 3-oxidase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G159500 [exp] 472 / 5e-169 AT4G23340 402 / 3e-141 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Potri.003G106900 [exp] 434 / 3e-154 AT4G23340 392 / 1e-137 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Potri.001G176600 [exp] 142 / 2e-39 AT1G15550 452 / 1e-159 GA REQUIRING 4, ARABIDOPSIS THALIANA GIBBERELLIN 3 BETA-HYDROXYLASE 1, gibberellin 3-oxidase 1 (.1) Potri.012G132400 [exp] 137 / 4e-37 AT5G51810 522 / 0.0 gibberellin 20 oxidase 2 (.1) Potri.015G002800 [exp] 132 / 4e-36 AT5G24530 521 / 0.0 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.015G134600 [exp] 132 / 1e-35 AT5G51810 525 / 0.0 gibberellin 20 oxidase 2 (.1) Potri.011G026700 [exp] 131 / 1e-35 AT4G21200 444 / 1e-157 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, gibberellin 2-oxidase 8 (.1.2.3) Potri.003G057400 [exp] 131 / 2e-35 AT1G15550 451 / 2e-159 GA REQUIRING 4, ARABIDOPSIS THALIANA GIBBERELLIN 3 BETA-HYDROXYLASE 1, gibberellin 3-oxidase 1 (.1) Potri.004G022800 [exp] 131 / 3e-35 AT4G21200 441 / 7e-156 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, gibberellin 2-oxidase 8 (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009663 [exp] 370 / 2e-128 AT4G23340 358 / 6e-124 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Lus10018836 [exp] 370 / 2e-128 AT5G51310 348 / 7e-120 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10027399 [exp] 149 / 1e-41 AT4G25420 514 / 0.0 GA REQUIRING 5, ARABIDOPSIS THALIANA GIBBERELLIN 20-OXIDASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10015016 [exp] 145 / 3e-40 AT4G25420 494 / 3e-176 GA REQUIRING 5, ARABIDOPSIS THALIANA GIBBERELLIN 20-OXIDASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10031671 [exp] 145 / 3e-40 AT5G07200 508 / 1e-180 ARABIDOPSIS THALIANA GIBBERELLIN 20-OXIDASE 3, gibberellin 20-oxidase 3 (.1) Lus10016659 [exp] 140 / 3e-39 AT1G52820 445 / 1e-158 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10009025 [exp] 136 / 2e-38 AT5G51310 131 / 9e-38 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10006722 [exp] 135 / 2e-36 AT1G60980 489 / 5e-174 gibberellin 20-oxidase 4 (.1) Lus10017799 [exp] 127 / 2e-36 AT5G51310 108 / 1e-29 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10023851 [exp] 132 / 1e-35 AT3G19000 474 / 9e-169 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [poplar] [flax] Cupin PF03171 [poplar] [flax] 2OG-FeII_Oxy 2OG-Fe(II) oxygenase superfamily CL0029 [poplar] [flax] Cupin PF14226 [poplar] [flax] DIOX_N non-haem dioxygenase in morphine synthesis N-terminal
Representative CDS sequence Show only first row Show all	>Potri.003G128100.1 pacid=42785668 polypeptide=Potri.003G128100.1.p locus=Potri.003G128100 ID=Potri.003G128100.1.v4.1 annot-version=v4.1 ATGGCTGAACTGCATGTTTCTGTAGAGCTTCCTGTGTTAGATTTATCCCAACCTGTGAACCTCTCATTTTTATCTTCCCTTTCTCAAGCCTGTCAAGAAT GGGGCTTCTTTTATGTTACCAATCATGGTATCTCAAGAAACTTGTTCAGCAAAGTTTGCACACTTTCGAAACATATCTTTAGCCTCCCCGCAGATTCCAA GCTCAAAGTCGGTCCATCATCATGCTTAAAAACCTACACTCCTCATTTCATAGCCTCACCTTATTTTGAAAGCCTGATAGTGTCTGGACCAGATTTCTTT GCGTCTGCTAAGCGTTCTGCTGATGAACTCTTTAGTCAACAAAACTCCGAATTTAGTGAGATATTACAGGAATATGGAAACAAGATGATCGACTTGTCAA AGAGAATCATCGAGGTTTTAGTGATGACTTTGGGAGATGGTTGTGACAGGAAGTTTTGTGAATCAGAATTCAGCAATTGTCATGGCTATTTCAGGGTTGT AAACTATTCACCACCGAAGGATGTGGAAGAAAGGGAGGTTGAAGGGCTTGGAATGCACACTGATATGAGCTGTATAACCATCGTCTATCAGGATGAGACT GGTGGGCTGCAAATGAGATCCAAGGAAGGAGAATGGCTGGACATACCTCCATGTGAGGATCTTCTTGTTGTTAACATTGGAGATCTGTTGCAGGCTTGGA GTAATGGAAGGTTAAGATCATCCGAACACCGGGTTGTTTTAAAGCGTTTAGTAAATCGCCTTTCTCTCGCTTTCTTTTGGTGCTTCGAGGATGAGAAGGT GATCTTGGCCCCAGATGAAGTTGTGGAGGAAGGAAACCAGAGGATTTACAAGTCATTCGTTTGCTTGGATTATCTGAAATTTAGAGAGAGTAACGAGGAA GGTAAATTTGAGAAAATTGGGTACACCGTAAAAGATTTTGCAGGGGTCACACTTCGAATGTAG
AA sequence Show only first row Show all	>Potri.003G128100.1 pacid=42785668 polypeptide=Potri.003G128100.1.p locus=Potri.003G128100 ID=Potri.003G128100.1.v4.1 annot-version=v4.1 MAELHVSVELPVLDLSQPVNLSFLSSLSQACQEWGFFYVTNHGISRNLFSKVCTLSKHIFSLPADSKLKVGPSSCLKTYTPHFIASPYFESLIVSGPDFF ASAKRSADELFSQQNSEFSEILQEYGNKMIDLSKRIIEVLVMTLGDGCDRKFCESEFSNCHGYFRVVNYSPPKDVEEREVEGLGMHTDMSCITIVYQDET GGLQMRSKEGEWLDIPPCEDLLVVNIGDLLQAWSNGRLRSSEHRVVLKRLVNRLSLAFFWCFEDEKVILAPDEVVEEGNQRIYKSFVCLDYLKFRESNEE GKFEKIGYTVKDFAGVTLRM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G23340			2-oxoglutarate (2OG) and Fe(II...		Potri.003G128100 [exp]	0	1	2OGox5
AT2G25180	GARP	ARR12	response regulator 12 (.1)		Potri.018G021300 [exp]	6.00	0.8574	ARR12.2
AT2G30590	WRKY	WRKY21	WRKY DNA-binding protein 21 (....		Potri.003G111900 [exp]	6.32	0.8793
AT5G03700			D-mannose binding lectin prote...		Potri.008G016900 [exp]	10.29	0.8813
AT1G78060			Glycosyl hydrolase family prot...		Potri.005G168400 [exp]	11.83	0.8527
AT4G27190			NB-ARC domain-containing disea...		Potri.019G036875 [exp]	12.36	0.8548
AT5G20400			2-oxoglutarate (2OG) and Fe(II...		Potri.018G121700 [exp]	13.85	0.8697
AT1G25530			Transmembrane amino acid trans...		Potri.008G118000 [exp]	14.17	0.8726
AT3G13050		AtNiaP	nicotinate transporter, Major ...		Potri.018G150700 [exp]	14.96	0.8394
AT1G13970			Protein of unknown function (D...		Potri.010G163100 [exp]	20.19	0.8170
					Potri.006G126401 [exp]	25.23	0.8173

Compare expression of checked genes

Potri.003G128100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.