Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G63660 911 / 0 GMP synthase (glutamine-hydrolyzing), putative / glutamine amidotransferase, putative (.1), GMP synthase (glutamine-hydrolyzing), putative / glutamine amidotransferase, putative (.2) AT3G27740 49 / 4e-06 VEN6, CARA VENOSA 6, carbamoyl phosphate synthetase A (.1.2) AT4G30550 42 / 0.0004 GGP3 gamma-glutamyl peptidase 3, Class I glutamine amidotransferase-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G080900 [exp] 42 / 0.001 AT3G27740 647 / 0.0 VENOSA 6, carbamoyl phosphate synthetase A (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024632 [exp] 972 / 0 AT1G63660 909 / 0.0 GMP synthase (glutamine-hydrolyzing), putative / glutamine amidotransferase, putative (.1), GMP synthase (glutamine-hydrolyzing), putative / glutamine amidotransferase, putative (.2) Lus10032268 [exp] 968 / 0 AT1G63660 910 / 0.0 GMP synthase (glutamine-hydrolyzing), putative / glutamine amidotransferase, putative (.1), GMP synthase (glutamine-hydrolyzing), putative / glutamine amidotransferase, putative (.2) Lus10013241 [exp] 42 / 0.0009 AT1G25220 368 / 2e-129 WEAK ETHYLENE INSENSITIVE7, TRYPTOPHAN BIOSYNTHESIS 4, anthranilate synthase beta subunit 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00958 [poplar] [flax] GMP_synt_C GMP synthase C terminal domain CL0014 [poplar] [flax] Glutaminase_I PF07722 [poplar] [flax] Peptidase_C26 Peptidase C26
Representative CDS sequence Show only first row Show all	>Potri.003G128200.1 pacid=42785976 polypeptide=Potri.003G128200.1.p locus=Potri.003G128200 ID=Potri.003G128200.1.v4.1 annot-version=v4.1 ATGGACCCAAAAGCAGTGAAATCAGACCTAGTACTTATCCTCGACTACGGTTCACAATACACTCATTTAATTACACGAAGAATCAGGTCCCTGAACATCT TCTCTCTCTGTATCTCAGGCACTTCTTCATTAGAAACCATAACTTCACACAACCCCAAAGTTGTTATCCTCTCAGGTGGACCCCACTCGGTCCATTCTGC CAATTCACCAACTTTCCCATCTGGGTTTGTCGAGTGGGCTCAAAAAGGTGGTATCTTTGTGTTGGGGGTATGTTATGGGCTGCAATTGATTGTGCAAAGA TTGGGCGGTCAAGTTGATGTTGGTCAAAGGCAAGAGTATGGGAGGATGGAGATTGAAGTGGAGAAGAATTTGGGTGTTTTTGGAAATAAGAAAGTTGGGG ATAAGCAGGTTGTTTGGATGAGTCATGGTGACGAGACTGTTAAGTTGCCTTATGGGTTTGAAGTTGTGGCTAGGAGTCAACAAGGGGCGGTTGCCGCAGT TGAAAATAGAGAAATGAGGTTTTTTGGCTTGCAGTATCATCCGGAGGTGACTCATTCACCCGAGGGCATGGATACACTGCGATACTTCCTGTTTGATGTT TGTGGAGTCTCTCCAGGGTGGAACATGGAAAATGTTTTGGATGAAGAAATCAGGGTGATCAATGACGCAGTGGGGCCTGAAGAGCATGTCATATGTGCAT TGTCAGGGGGTGTGGATTCCACAGTTGCTGCAACTCTTGTTCACAAGGCAATTGGAGATAGGCTTCATTGTATTTTTGTTGATAATGGCTTATTGAGATA TAAAGAGAGAGAACGTGTTGCGGAAACTTTTGAAAGTGATCTGCATCTACCGGTTACTTGTGTTGATGCATCAAATGAATTCCTTAGTAAGCTGAAAGGC GTGGTGGATCCTGAGATGAAAAGGAAAATTATTGGAAAGGAGTTTATTAGCATCTTTGATGCTTTTGCCCATGAGTTGGAGCAGAAATTGGGAAAGAAAC CTGCGTACTTGGTCCAAGGGACCTTGTATCCAGATGTTATTGAATCTTGCCCACCTCCTGGATCTGGAAGAACCCACTCTCACACTATCAAGAGCCATCA TAATGTTGGAGGGCTTCCAAAGGACATGAAATTGAAGCTCATTGAACCACTTAAACTTTTATTTAAGGATGAGGTTCGTCAGCTAGGAAGAATCTTGAAT GTTCCTGATGCATTTCTGAAGCGCCACCCTTTCCCTGGTCCTGGCCTTGCCGTACGAGTCTTGGGTGATGTAACTGAAGGCAATGCTTTAGATATCCTCC GCCAGGTTGACGAGATTTTTATTCAGTCCATCAAGGATGCTGGGCTATATGATTCGATTTGGCAAGCTTTTGCAGTATTTCTTCCTGTTAGATCAGTTGG AGTTCAAGGTGATCAAAGAACTCATTCTCATGTTGTCGCTCTTAGAGCTGTTACGAGTCAAGATGGAATGACAGCTGATTGGTACTATTTTGAACACAAG TTCCTTGATGACGTGGCCAGAAAAATCTGTAATAGTGTAAGAGGTGTAAACCGAGTTGTTCAAGACATCACATCAAAGCCTCCGTCAACAATTGAGTGGG AATGA
AA sequence Show only first row Show all	>Potri.003G128200.1 pacid=42785976 polypeptide=Potri.003G128200.1.p locus=Potri.003G128200 ID=Potri.003G128200.1.v4.1 annot-version=v4.1 MDPKAVKSDLVLILDYGSQYTHLITRRIRSLNIFSLCISGTSSLETITSHNPKVVILSGGPHSVHSANSPTFPSGFVEWAQKGGIFVLGVCYGLQLIVQR LGGQVDVGQRQEYGRMEIEVEKNLGVFGNKKVGDKQVVWMSHGDETVKLPYGFEVVARSQQGAVAAVENREMRFFGLQYHPEVTHSPEGMDTLRYFLFDV CGVSPGWNMENVLDEEIRVINDAVGPEEHVICALSGGVDSTVAATLVHKAIGDRLHCIFVDNGLLRYKERERVAETFESDLHLPVTCVDASNEFLSKLKG VVDPEMKRKIIGKEFISIFDAFAHELEQKLGKKPAYLVQGTLYPDVIESCPPPGSGRTHSHTIKSHHNVGGLPKDMKLKLIEPLKLLFKDEVRQLGRILN VPDAFLKRHPFPGPGLAVRVLGDVTEGNALDILRQVDEIFIQSIKDAGLYDSIWQAFAVFLPVRSVGVQGDQRTHSHVVALRAVTSQDGMTADWYYFEHK FLDDVARKICNSVRGVNRVVQDITSKPPSTIEWE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G63660			GMP synthase (glutamine-hydrol...		Potri.003G128200 [exp]	0	1
AT4G25630		ATFIB2, FIB2	fibrillarin 2 (.1)		Potri.012G144800 [exp]	1.00	0.8611
AT5G07900			Mitochondrial transcription te...		Potri.012G046800 [exp]	2.44	0.8216
AT5G41970			Metal-dependent protein hydrol...		Potri.003G145900 [exp]	3.00	0.8398
AT4G28200			unknown protein		Potri.007G040000 [exp]	6.16	0.8446
AT5G14050			Transducin/WD40 repeat-like su...		Potri.005G218600 [exp]	7.21	0.7985
AT3G18760			Translation elongation factor...		Potri.018G113200 [exp]	7.74	0.8322
AT5G61770		PPAN	PETER PAN-like protein (.1.2.3...		Potri.002G204900 [exp]	10.19	0.8396
AT1G20370			Pseudouridine synthase family ...		Potri.005G247000 [exp]	10.39	0.8124
AT5G60990			DEA(D/H)-box RNA helicase fami...		Potri.007G068800 [exp]	10.48	0.8069
AT5G62290			nucleotide-sensitive chloride ...		Potri.015G129900 [exp]	10.95	0.8039

Compare expression of checked genes

Potri.003G128200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.