Plant FIBer expression Database

Potri.003G128400 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G103200
[exp]
838 / 0 ND /
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10035486
[exp]
125 / 7e-31 ND /
Lus10002011
[exp]
104 / 2e-23 ND /
Lus10024633
[exp]
47 / 4e-05 ND /
PFAM info
Representative CDS sequence
>Potri.003G128400.1 pacid=42787364 polypeptide=Potri.003G128400.1.p locus=Potri.003G128400 ID=Potri.003G128400.1.v4.1 annot-version=v4.1
ATGATGTCCGCCAACTCTAAAATGGCAGAGCAACTGAAACTGCATCAACGCTGGGAGTTTAGGAGGAAAGACAATGATTCCGATTCTTCTAGCAATGATT
CAAAACCAAGTGGCGAGCCAGCTCTCAAAACATACAAACTGATCTCCAGCTTCATTTCAGTTGACAATGAGGAAACTAGCGAGGCTAGTAAACTGCACCA
GAATGGGAACTGTGATCCTGGTATTTCGGACCAAATGAAATCTGGGAAAGCTGAAAATGGCCGGAGGAGGAGGAAGAGTAAAAGGGATGATTCAGCTCCT
AATGAGATAAAGAAGGGCCCTCGTAAAGGAGTCCGCCGTAAGAAGAGTAAAACTATTACTGATGAGCAGGCTGTATTTTATGATCTTAAGAAATACATGA
ACTTCTTATTGGAGGATCTTAAAGTTTCAAGAGAGAATTTGTTGAAGTGGATGAGGGAAGAAATGCAGAAATTGGTGGCAGAGGAGACAGTTTCTGAGCT
GGAAACAAGAGAACGCAGCTTCAGAGGAGAGAAAGTTCAATTGCAGAACCAAGCCAACTTTGAGGAGAATGCGGAAGTTCAGCACCGAAACATCTTCGAG
AAGAACATACCGGCACAACATCAAAACAACATTCAGGGGTATGGCCAACTGCAGGCCCATAAAGAGTTTGAGGAGAATGTCCACAGGCAGAACCTAATCA
ATTTCGAGAACACTGAAGTGCATCATCAGGAGACCATTTTCCTGCAGAATCGAAATGCCTTCAAATCTTTCAAAGGGGCTCAAGACTGCAATGATGAATC
TACAGAGAGGTTTGGTGAAACCAATAAATCAGCTGATTTTAGTAATTGCAGTCTATCATTGGACAGTCAAGCTGGTTATAGCCGAGCAAATGTACCCTCA
TCAAGAACTGAGAAGGACAGAGAAGAAAGAATGGCATTATCTGCCAAGTTGAATTCTAAACCTAGTTCTTCGGATCAGAACGTGCAAGTGCAGCAGCTAA
ATAGCATTGTGTTGGGCATAAGAGCTCAAAGCAACAATAAATCTTCAGAGAGGTCTGCAAAAGGCAGAAAGACTAGTGATTCTAATCGTCACCATCAAGT
ACCTGAACATCAATCTGATTGTGCCCAAGTGATTGGATCCTTGACATCAACTGAGAGGGACAAAGGAGAAAGACTGCCATTATCTGTCCAACCAATGTTT
CCAGCTAACTCCAACCAGGTAGCTTCGTCAATGTACTTAACACTGCCTACTGTGTTAACAAAGCCTCATGTAGCAAACCATAGGTTTGATACATCTTCAT
TGAACTCTATTCAACCAAGACTTGCTGGGAATCAAATAGGCTTGAGTTCAGAAAGACCGAATCTGTTACTAGGTTCAAGCAGTCTTCATGGATACTTTCA
GGACATGCAGCCAGAGGAAAGAAGTAGAAACTTTGCTCAAGTGAGTTCCAGAGACATCAGTTACTTCAACCAAAATAGCACGTCATCAATTTTTGGAAAT
GGACTCCCAGATCCATTTCTTCAGGCCGTAAATAGTAATTTTAATATTCCAACCCAAGTCAGCTTGGAAAATCTAGCTCGAGAAAGCAGCATGCCAAGCC
TAAGCATGAGAGGAGGAGCCACGAGGCTTCCAGGGGGGAGCTACTCTTTCTCAGAACAGTTTACAGCGAGCAACTTTCTCAACCATTCTAGTTACAAAGT
AGATGGTAGACTAATGGCATATCAAGATGGTTATCAATTCCAAAAATAG
AA sequence
>Potri.003G128400.1 pacid=42787364 polypeptide=Potri.003G128400.1.p locus=Potri.003G128400 ID=Potri.003G128400.1.v4.1 annot-version=v4.1
MMSANSKMAEQLKLHQRWEFRRKDNDSDSSSNDSKPSGEPALKTYKLISSFISVDNEETSEASKLHQNGNCDPGISDQMKSGKAENGRRRRKSKRDDSAP
NEIKKGPRKGVRRKKSKTITDEQAVFYDLKKYMNFLLEDLKVSRENLLKWMREEMQKLVAEETVSELETRERSFRGEKVQLQNQANFEENAEVQHRNIFE
KNIPAQHQNNIQGYGQLQAHKEFEENVHRQNLINFENTEVHHQETIFLQNRNAFKSFKGAQDCNDESTERFGETNKSADFSNCSLSLDSQAGYSRANVPS
SRTEKDREERMALSAKLNSKPSSSDQNVQVQQLNSIVLGIRAQSNNKSSERSAKGRKTSDSNRHHQVPEHQSDCAQVIGSLTSTERDKGERLPLSVQPMF
PANSNQVASSMYLTLPTVLTKPHVANHRFDTSSLNSIQPRLAGNQIGLSSERPNLLLGSSSLHGYFQDMQPEERSRNFAQVSSRDISYFNQNSTSSIFGN
GLPDPFLQAVNSNFNIPTQVSLENLARESSMPSLSMRGGATRLPGGSYSFSEQFTASNFLNHSSYKVDGRLMAYQDGYQFQK

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.003G128400
[exp]
0 1
AT3G61250 MYB LMI2, ATMYB17 LATE MERISTEM IDENTITY2, myb d... Potri.014G081200
[exp]
5.29 0.7877
AT5G05280 RING/U-box superfamily protein... Potri.001G159300
[exp]
9.48 0.7797
AT5G14090 unknown protein Potri.001G327500
[exp]
10.39 0.8041
AT2G25920 unknown protein Potri.002G198400
[exp]
14.86 0.7452
AT1G26320 Zinc-binding dehydrogenase fam... Potri.017G002700
[exp]
15.00 0.7619
AT5G45160 Root hair defective 3 GTP-bind... Potri.012G116000
[exp]
15.39 0.8183
AT5G16150 PGLCT, GLT1 GLUCOSE TRANSPORTER 1, plastid... Potri.004G097800
[exp]
17.57 0.7941
AT5G65550 UDP-Glycosyltransferase superf... Potri.008G024900
[exp]
18.57 0.7464
AT5G38460 ALG6, ALG8 glycosyltransferase... Potri.017G114100
[exp]
25.09 0.7438
AT5G45160 Root hair defective 3 GTP-bind... Potri.012G116130
[exp]
29.49 0.7771

Potri.003G128400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.