Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G63690 857 / 0 ATSPPL2 SIGNAL PEPTIDE PEPTIDASE-LIKE 2 (.1.2) AT1G01650 759 / 0 ATSPPL4 ARABIDOPSIS THALIANA SIGNAL PEPTIDE PEPTIDASE-LIKE 4, SIGNAL PEPTIDE PEPTIDASE-LIKE 4 (.1.2) AT2G43070 461 / 1e-157 ATSPPL3 ARABIDOPSIS THALIANA SIGNAL PEPTIDE PEPTIDASE-LIKE 3, SIGNAL PEPTIDE PEPTIDASE-LIKE 3 (.1) AT1G05820 457 / 2e-156 ATSPPL5 ARABIDOPSIS THALIANA SIGNAL PEPTIDE PEPTIDASE-LIKE 5, SIGNAL PEPTIDE PEPTIDASE-LIKE 5 (.1.2) AT4G33410 97 / 8e-22 ATSPPL1 SIGNAL PEPTIDE PEPTIDASE-LIKE 1 (.1) AT2G03120 97 / 8e-22 ATSPP signal peptide peptidase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G103100 [exp] 994 / 0 AT1G63690 829 / 0.0 SIGNAL PEPTIDE PEPTIDASE-LIKE 2 (.1.2) Potri.002G160500 [exp] 833 / 0 AT1G01650 838 / 0.0 ARABIDOPSIS THALIANA SIGNAL PEPTIDE PEPTIDASE-LIKE 4, SIGNAL PEPTIDE PEPTIDASE-LIKE 4 (.1.2) Potri.014G085300 [exp] 810 / 0 AT1G01650 810 / 0.0 ARABIDOPSIS THALIANA SIGNAL PEPTIDE PEPTIDASE-LIKE 4, SIGNAL PEPTIDE PEPTIDASE-LIKE 4 (.1.2) Potri.002G232200 [exp] 485 / 3e-167 AT2G43070 626 / 0.0 ARABIDOPSIS THALIANA SIGNAL PEPTIDE PEPTIDASE-LIKE 3, SIGNAL PEPTIDE PEPTIDASE-LIKE 3 (.1) Potri.014G150000 [exp] 466 / 5e-160 AT2G43070 570 / 0.0 ARABIDOPSIS THALIANA SIGNAL PEPTIDE PEPTIDASE-LIKE 3, SIGNAL PEPTIDE PEPTIDASE-LIKE 3 (.1) Potri.012G142400 [exp] 99 / 3e-22 AT4G33410 633 / 0.0 SIGNAL PEPTIDE PEPTIDASE-LIKE 1 (.1) Potri.001G276700 [exp] 97 / 8e-22 AT2G03120 550 / 0.0 signal peptide peptidase (.1) Potri.009G071600 [exp] 97 / 1e-21 AT2G03120 542 / 0.0 signal peptide peptidase (.1) Potri.015G145600 [exp] 96 / 3e-21 AT4G33410 614 / 0.0 SIGNAL PEPTIDE PEPTIDASE-LIKE 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031104 [exp] 907 / 0 AT1G63690 872 / 0.0 SIGNAL PEPTIDE PEPTIDASE-LIKE 2 (.1.2) Lus10017796 [exp] 805 / 0 AT1G01650 802 / 0.0 ARABIDOPSIS THALIANA SIGNAL PEPTIDE PEPTIDASE-LIKE 4, SIGNAL PEPTIDE PEPTIDASE-LIKE 4 (.1.2) Lus10024653 [exp] 773 / 0 AT1G63690 744 / 0.0 SIGNAL PEPTIDE PEPTIDASE-LIKE 2 (.1.2) Lus10032285 [exp] 747 / 0 AT1G63690 713 / 0.0 SIGNAL PEPTIDE PEPTIDASE-LIKE 2 (.1.2) Lus10018834 [exp] 676 / 0 AT1G01650 685 / 0.0 ARABIDOPSIS THALIANA SIGNAL PEPTIDE PEPTIDASE-LIKE 4, SIGNAL PEPTIDE PEPTIDASE-LIKE 4 (.1.2) Lus10036364 [exp] 605 / 0 AT1G01650 608 / 0.0 ARABIDOPSIS THALIANA SIGNAL PEPTIDE PEPTIDASE-LIKE 4, SIGNAL PEPTIDE PEPTIDASE-LIKE 4 (.1.2) Lus10014769 [exp] 594 / 0 AT4G00370 662 / 0.0 anion transporter 2, Major facilitator superfamily protein (.1) Lus10001154 [exp] 461 / 5e-158 AT1G05820 563 / 0.0 ARABIDOPSIS THALIANA SIGNAL PEPTIDE PEPTIDASE-LIKE 5, SIGNAL PEPTIDE PEPTIDASE-LIKE 5 (.1.2) Lus10035484 [exp] 374 / 9e-126 AT1G63690 364 / 3e-122 SIGNAL PEPTIDE PEPTIDASE-LIKE 2 (.1.2) Lus10019557 [exp] 188 / 4e-55 AT2G43070 245 / 2e-77 ARABIDOPSIS THALIANA SIGNAL PEPTIDE PEPTIDASE-LIKE 3, SIGNAL PEPTIDE PEPTIDASE-LIKE 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0364 [poplar] [flax] Leu-IlvD PF02225 [poplar] [flax] PA PA domain CL0130 [poplar] [flax] Peptidase_AD PF04258 [poplar] [flax] Peptidase_A22B Signal peptide peptidase
Representative CDS sequence Show only first row Show all	>Potri.003G128500.1 pacid=42786446 polypeptide=Potri.003G128500.1.p locus=Potri.003G128500 ID=Potri.003G128500.1.v4.1 annot-version=v4.1 ATGGATTTGCAAAAACTGTGCCTTGTAATCACTGTCACAGCTGTGATTTCACTGGTGTGTTACCCATCTTCAGTTACCGCAGGAGATATAGTTCATGATG ATAATTTAGCCCCAAAAAAGCCAGGCTGCGAAAATGACTTCGTTTTGGTAAAAGTTCAAACTTGGGTCGATGGAGTTGAGGATGCTGAATTTGTTGGTGT GGGTGCTAGATTTGGCACTACCATTGTGTCAAAAGAGAAAAATGCAAACCAAATTCGCCTTACACTTTCAGACCCTCTAGATTGTTGTAGTGCACCTAAG CATAAGCTTGATGGAGATGTCATCATGGTTCACCGAGGTCATTGCAAGTTCACTACCAAAGCAAATAATGCTGAGGCTGCTGGTGCTTCAGCCTTGCTCA TTATAAATAACCAAAAAGAACTTTACAAGATGGTCTGTGAGCCAGATGAAACTGATCTGGATATACACATACCTGCTGTTATGCTTCCACAAGATGCAGG TTCAAGCTTGGAAAAAATGCTGCTAACTAATTCATCTGTGTCTGTGCAGCTTTACTCTCCAAGGCGACCATTAGTTGATATTGCTGAAGTCTTTTTGTGG TTGATGGCAGTCGGTACCATCTTGTGCGCCTCTTATTGGTCTGCATGGAGTGCCAGAGAAGCAGCTATTGAACAAGACAAGCTATTGAAGGATGCTGTGG ATGAAATTCCAAATGAAAAGGCTGTGGGTTTTAGTACTGTTGTAGACATTAATACAACGTCAGCTGTTCTGTTTGTTGTCATTGCTTCATGCTTCTTGGT CATACTTTACAAACTCATGTCATATTGGTTCATAGAGCTTTTGGTGGTCCTCTTCTGCATAGGTGGTGTGGAGGGATTGCAAACTTGCCTGGTCGCTTTG TTGTCAAGGTGGTTCAAGCATGCTGGAGAATCATACATTAAGGTGCCATTCTTTGGACCTCTCTCATACCTAACTTTGGCTGTTGCTCCATTCTGCATAG CATTTGCAGTTGTTTGGGCTGTGTATCGCACTGTTTCCTTTGCCTGGATAGGTCAAGATATACTCGGAATTGCACTGATAATCACCGTTCTGCAAATTGT CCATGTGCCTAATCTCAAGGTGGGTACAGTTCTTCTCAGTTGTGCGTTCTTGTATGACATCTTTTGGGTGTTTGTTTCTAAGAAGGTGTTCCATGAAAGC GTCATGATTGTGGTGGCTCGTGGTGATAGAAGTGGAGAGGATGGAATACCGATGCTGTTAAAGATCCCACGCTTGTTTGATCCTTGGGGTGGTTACAGCA TCATAGGATTTGGTGACATCCTTTTACCTGGATTGCTGATAGCATTTTCCCTCAGGTATGATTGGTTAGCAACTAAGAGTCTTCGAGCTGGGTACTTCCC ATGGGCAATGCTTGCTTATGGACTAGGTCTTCTCGTTACTTATGTGGCACTGAACTTGATGGATGGCCATGGGCAACCAGCACTGCTCTATATTGTCCCA TTCACCCTTGGAACTTTTCTGGCACTGGGGAAGAAAAGAGGGGATCTCAGAGTCTTATGGACCCAAGGAGAACCAGAAACACCATGTTCCCATGTCCGTC TCCAACATAGTGAAGAATTGGACTAG
AA sequence Show only first row Show all	>Potri.003G128500.1 pacid=42786446 polypeptide=Potri.003G128500.1.p locus=Potri.003G128500 ID=Potri.003G128500.1.v4.1 annot-version=v4.1 MDLQKLCLVITVTAVISLVCYPSSVTAGDIVHDDNLAPKKPGCENDFVLVKVQTWVDGVEDAEFVGVGARFGTTIVSKEKNANQIRLTLSDPLDCCSAPK HKLDGDVIMVHRGHCKFTTKANNAEAAGASALLIINNQKELYKMVCEPDETDLDIHIPAVMLPQDAGSSLEKMLLTNSSVSVQLYSPRRPLVDIAEVFLW LMAVGTILCASYWSAWSAREAAIEQDKLLKDAVDEIPNEKAVGFSTVVDINTTSAVLFVVIASCFLVILYKLMSYWFIELLVVLFCIGGVEGLQTCLVAL LSRWFKHAGESYIKVPFFGPLSYLTLAVAPFCIAFAVVWAVYRTVSFAWIGQDILGIALIITVLQIVHVPNLKVGTVLLSCAFLYDIFWVFVSKKVFHES VMIVVARGDRSGEDGIPMLLKIPRLFDPWGGYSIIGFGDILLPGLLIAFSLRYDWLATKSLRAGYFPWAMLAYGLGLLVTYVALNLMDGHGQPALLYIVP FTLGTFLALGKKRGDLRVLWTQGEPETPCSHVRLQHSEELD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G63690		ATSPPL2	SIGNAL PEPTIDE PEPTIDASE-LIKE ...		Potri.003G128500 [exp]	0	1
AT3G17980		AtC2	Arabidopsis thaliana C2 domain...		Potri.004G089500 [exp]	2.23	0.8376
AT1G21760		ATFBP7	F-box protein 7 (.1)		Potri.002G082500 [exp]	4.24	0.8123
					Potri.015G107925 [exp]	4.69	0.7979
AT3G09640		APX1B, APX2	ASCORBATE PEROXIDASE 1B, ascor...		Potri.006G132200 [exp]	5.00	0.8158	APX1.2
AT4G24940		ATSAE1A, AT-SAE...	SUMO-activating enzyme 1A (.1)		Potri.012G100800 [exp]	6.92	0.7911
AT2G24170			Endomembrane protein 70 protei...		Potri.018G106600 [exp]	7.21	0.8174
AT3G19340			Protein of unknown function (D...		Potri.014G144300 [exp]	9.00	0.8039
AT3G05010			Protein of unknown function, t...		Potri.013G031200 [exp]	10.09	0.7460
AT4G37210			Tetratricopeptide repeat (TPR)...		Potri.005G130800 [exp]	11.13	0.8251
AT4G39870			TLD-domain containing nucleola...		Potri.005G075800 [exp]	11.22	0.7682

Compare expression of checked genes

Potri.003G128500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.