Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G00430 514 / 0 PIP1;4, TMP-C, PIP1E TRANSMEMBRANE PROTEIN C, PLASMA MEMBRANE INTRINSIC PROTEIN 1E, plasma membrane intrinsic protein 1;4 (.1.2) AT2G45960 514 / 0 PIP1;2, ATHH2, TMP-A, PIP1B TRANSMEMBRANE PROTEIN A, NAMED PLASMA MEMBRANE INTRINSIC PROTEIN 1;2, plasma membrane intrinsic protein 1B (.1.2.3) AT1G01620 497 / 6e-180 TMP-B, PIP1C, PIP1;3 PLASMA MEMBRANE INTRINSIC PROTEIN 1;3, plasma membrane intrinsic protein 1C (.1.2) AT3G61430 489 / 6e-177 ATPIP1, PIP1;1, PIP1A PLASMA MEMBRANE INTRINSIC PROTEIN 1;1, ARABIDOPSIS THALIANA PLASMA MEMBRANE INTRINSIC PROTEIN 1, plasma membrane intrinsic protein 1A (.1.2) AT4G23400 489 / 1e-176 PIP1D, PIP1;5 plasma membrane intrinsic protein 1;5 (.1) AT2G37170 385 / 1e-135 PIP2;2, PIP2B PLASMA MEMBRANE INTRINSIC PROTEIN 2;2, plasma membrane intrinsic protein 2 (.1) AT3G53420 384 / 4e-135 PIP2;1, PIP2A PLASMA MEMBRANE INTRINSIC PROTEIN 2;1, plasma membrane intrinsic protein 2A (.1.2) AT2G37180 383 / 5e-135 PIP2C, PIP2;3, RD28 RESPONSIVE TO DESICCATION 28, PLASMA MEMBRANE INTRINSIC PROTEIN 2C, PLASMA MEMBRANE INTRINSIC PROTEIN 2;3, Aquaporin-like superfamily protein (.1) AT4G35100 378 / 4e-133 SIMIP, PIP3A, PIP2;7, PIP3 PLASMA MEMBRANE INTRINSIC PROTEIN 3A, PLASMA MEMBRANE INTRINSIC PROTEIN 2;7, plasma membrane intrinsic protein 3 (.1.2) AT2G16850 377 / 1e-132 PIP3B, PIP2;8 PLASMA MEMBRANE INTRINSIC PROTEIN 3B, plasma membrane intrinsic protein 2;8 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G065600 [exp] 523 / 0 AT4G00430 514 / 0.0 TRANSMEMBRANE PROTEIN C, PLASMA MEMBRANE INTRINSIC PROTEIN 1E, plasma membrane intrinsic protein 1;4 (.1.2) Potri.010G191900 [exp] 519 / 0 AT4G00430 509 / 0.0 TRANSMEMBRANE PROTEIN C, PLASMA MEMBRANE INTRINSIC PROTEIN 1E, plasma membrane intrinsic protein 1;4 (.1.2) Potri.016G113300 [exp] 503 / 0 AT4G00430 524 / 0.0 TRANSMEMBRANE PROTEIN C, PLASMA MEMBRANE INTRINSIC PROTEIN 1E, plasma membrane intrinsic protein 1;4 (.1.2) Potri.006G098100 [exp] 487 / 5e-176 AT4G00430 482 / 4e-174 TRANSMEMBRANE PROTEIN C, PLASMA MEMBRANE INTRINSIC PROTEIN 1E, plasma membrane intrinsic protein 1;4 (.1.2) Potri.009G013900 [exp] 393 / 6e-139 AT2G37170 458 / 8e-165 PLASMA MEMBRANE INTRINSIC PROTEIN 2;2, plasma membrane intrinsic protein 2 (.1) Potri.006G128200 [exp] 392 / 2e-138 AT2G37170 490 / 3e-177 PLASMA MEMBRANE INTRINSIC PROTEIN 2;2, plasma membrane intrinsic protein 2 (.1) Potri.006G128000 [exp] 388 / 5e-137 AT2G37170 487 / 5e-176 PLASMA MEMBRANE INTRINSIC PROTEIN 2;2, plasma membrane intrinsic protein 2 (.1) Potri.010G222700 [exp] 385 / 6e-136 AT3G54820 484 / 6e-175 PLASMA MEMBRANE INTRINSIC PROTEIN 2D, plasma membrane intrinsic protein 2;5 (.1) Potri.004G176300 [exp] 381 / 2e-134 AT4G35100 513 / 0.0 PLASMA MEMBRANE INTRINSIC PROTEIN 3A, PLASMA MEMBRANE INTRINSIC PROTEIN 2;7, plasma membrane intrinsic protein 3 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032283 [exp] 520 / 0 AT2G45960 526 / 0.0 TRANSMEMBRANE PROTEIN A, NAMED PLASMA MEMBRANE INTRINSIC PROTEIN 1;2, plasma membrane intrinsic protein 1B (.1.2.3) Lus10024651 [exp] 520 / 0 AT2G45960 526 / 0.0 TRANSMEMBRANE PROTEIN A, NAMED PLASMA MEMBRANE INTRINSIC PROTEIN 1;2, plasma membrane intrinsic protein 1B (.1.2.3) Lus10028273 [exp] 514 / 0 AT4G00430 511 / 0.0 TRANSMEMBRANE PROTEIN C, PLASMA MEMBRANE INTRINSIC PROTEIN 1E, plasma membrane intrinsic protein 1;4 (.1.2) Lus10035483 [exp] 509 / 0 AT2G45960 520 / 0.0 TRANSMEMBRANE PROTEIN A, NAMED PLASMA MEMBRANE INTRINSIC PROTEIN 1;2, plasma membrane intrinsic protein 1B (.1.2.3) Lus10014840 [exp] 464 / 8e-167 AT2G45960 461 / 1e-165 TRANSMEMBRANE PROTEIN A, NAMED PLASMA MEMBRANE INTRINSIC PROTEIN 1;2, plasma membrane intrinsic protein 1B (.1.2.3) Lus10023184 [exp] 388 / 9e-137 AT2G37170 490 / 3e-177 PLASMA MEMBRANE INTRINSIC PROTEIN 2;2, plasma membrane intrinsic protein 2 (.1) Lus10023515 [exp] 382 / 2e-134 AT3G54820 482 / 5e-174 PLASMA MEMBRANE INTRINSIC PROTEIN 2D, plasma membrane intrinsic protein 2;5 (.1) Lus10039222 [exp] 381 / 3e-134 AT2G16850 518 / 0.0 PLASMA MEMBRANE INTRINSIC PROTEIN 3B, plasma membrane intrinsic protein 2;8 (.1) Lus10027467 [exp] 381 / 4e-134 AT2G16850 518 / 0.0 PLASMA MEMBRANE INTRINSIC PROTEIN 3B, plasma membrane intrinsic protein 2;8 (.1) Lus10019934 [exp] 380 / 1e-133 AT2G37170 474 / 6e-171 PLASMA MEMBRANE INTRINSIC PROTEIN 2;2, plasma membrane intrinsic protein 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00230 [poplar] [flax] MIP Major intrinsic protein
Representative CDS sequence Show only first row Show all	>Potri.003G128600.2 pacid=42784643 polypeptide=Potri.003G128600.2.p locus=Potri.003G128600 ID=Potri.003G128600.2.v4.1 annot-version=v4.1 ATGGAGGGCAAAGAAGAGGATGTTAAGCTCGGAGCTAACAAGTTCTCAGAAAGACAGCCTATTGGGACATCAGCTCAAACAGACAAGGATTACAAAGAGG CGCCACCGGCTCCTTTGTTTGAGCCCGGTGAACTCAAGTCATGGTCCTTTTACAGGGCTGGTATTGCTGAGTTCATAGCCACTTTCTTGTTCCTTTACAT CACTGTCTTGACTGTCATGGGTGTTACTAAGCCTGGTACCAGCAAATGTTCCACTGTTGGTATTCAAGGCATTGCTTGGGCTTTTGGTGGCATGATCTTT GCCCTTGTTTACTGCACTGCTGGTATCTCAGGTGGACACATCAACCCAGCTGTGACCTTTGGGCTGTTTTTGGCAAGGAAGCTCTCTTTGACAAGGGCTG TGTTTTACATCATCATGCAGTGCCTTGGTGCAATCTGTGGTGCTGGTGTAGTGAAGGGTCTCCAAGGAAGCCACAACTACGAGCTTCAGGGTGGCGGAGC TAATGTTGTGAATCATGGATACACCAAGGGTGATGGCCTTGGTGCGGAGATAGTCGGTACCTTTGTTCTTGTCTACACTGTCTTCTCTGCTACTGATGCC AAGAGAAACGCTAGAGACTCTCATGTCCCTATTTTGGCTCCCCTTCCCATTGGATTTGCAGTCTTCTTGGTTCATTTGGCTACCATCCCCATAACTGGAA CTGGCATTAACCCGGCAAGGAGTCTTGGAGCCGCCATCATCTTCAACAAAGACCATGCATGGGATGACCACTGGATCTTCTGGGTTGGCCCATTCATTGG AGCTGCTCTTGCCGCTGTCTACCACCAGATAGTCATTAGAGCCATTCCTTTCAAGAGCAGAGCTTAA
AA sequence Show only first row Show all	>Potri.003G128600.2 pacid=42784643 polypeptide=Potri.003G128600.2.p locus=Potri.003G128600 ID=Potri.003G128600.2.v4.1 annot-version=v4.1 MEGKEEDVKLGANKFSERQPIGTSAQTDKDYKEAPPAPLFEPGELKSWSFYRAGIAEFIATFLFLYITVLTVMGVTKPGTSKCSTVGIQGIAWAFGGMIF ALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYIIMQCLGAICGAGVVKGLQGSHNYELQGGGANVVNHGYTKGDGLGAEIVGTFVLVYTVFSATDA KRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNKDHAWDDHWIFWVGPFIGAALAAVYHQIVIRAIPFKSRA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G00430		PIP1;4, TMP-C, ...	TRANSMEMBRANE PROTEIN C, PLASM...		Potri.003G128600 [exp]	0	1
AT1G10630		ATARFA1F	ADP-ribosylation factor A1F (....		Potri.005G007400 [exp]	2.82	0.8958	Pt-ARF1.7
AT5G56540		ATAGP14, AGP14	arabinogalactan protein 14 (.1...		Potri.001G004100 [exp]	2.82	0.8863	Pt-AGP13.2
AT1G79590		ATSYP52, SYP52	syntaxin of plants 52 (.1.2)		Potri.006G032900 [exp]	4.24	0.8802
AT5G39510		ZIG1, SGR4, ATV...	SHOOT GRAVITROPSIM 4, VESICLE ...		Potri.004G115700 [exp]	5.00	0.8987
AT4G20410		GAMMA-SNAP, GSN...	gamma-soluble NSF attachment p...		Potri.011G155200 [exp]	5.00	0.8862	Pt-GSNAP.1
AT3G56190		ASNAP, ALPHA-SN...	alpha-soluble NSF attachment p...		Potri.010G181900 [exp]	8.94	0.8838	ASNAP.3
AT3G01390		AVMA10, VMA10	vacuolar membrane ATPase 10 (....		Potri.010G222000 [exp]	10.95	0.8947	VMA10.2
AT3G56190		ASNAP, ALPHA-SN...	alpha-soluble NSF attachment p...		Potri.008G075400 [exp]	12.72	0.8855	ASNAP.1
AT1G63260		TET10	tetraspanin10 (.1.2.3)		Potri.001G107200 [exp]	18.97	0.8627
AT5G25170			PPPDE putative thiol peptidase...		Potri.018G021700 [exp]	21.33	0.8351

Compare expression of checked genes

Potri.003G128600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.