Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	YDA.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G63700 851 / 0 EMB71, MAPKKK4, YDA YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) AT1G53570 399 / 3e-128 MAPKKK3, MAP3KA MAP KINASE KINASE KINASE 3, mitogen-activated protein kinase kinase kinase 3 (.1.2.3.4.5) AT5G66850 337 / 1e-103 MAPKKK5 mitogen-activated protein kinase kinase kinase 5 (.1) AT1G54960 278 / 1e-82 MAPKKK2, ANP2 MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASES 2, NPK1-related protein kinase 2 (.1) AT1G09000 277 / 1e-81 MAPKKK1, ANP1 MAP KINASE KINASE KINASE 1, NPK1-related protein kinase 1 (.1) AT4G08500 259 / 2e-75 ARAKIN, ATMEKK1, MAPKKK8, MEKK1 MAPK/ERK kinase kinase 1 (.1) AT3G06030 252 / 1e-72 AtANP3, MAPKKK12, ANP3 NPK1-related protein kinase 3 (.1) AT4G08470 243 / 2e-70 MEKK3, MAPKKK10 MAPK/ERK kinase kinase 3 (.1) AT4G08480 236 / 3e-66 MEKK2, MAPKKK9 MAPK/ERK KINASE KINASE 2, mitogen-activated protein kinase kinase kinase 9 (.1) AT4G12020 234 / 2e-63 WRKY MEKK4, MAPKKK11, ATWRKY19, WRKY19 MAPK/ERK KINASE KINASE 4, MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 11, protein kinase family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G102900 [exp] 1359 / 0 AT1G63700 868 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Potri.015G146700 [exp] 1008 / 0 AT1G63700 826 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Potri.012G143900 [exp] 991 / 0 AT1G63700 766 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Potri.005G062500 [exp] 409 / 1e-131 AT1G53570 566 / 0.0 MAP KINASE KINASE KINASE 3, mitogen-activated protein kinase kinase kinase 3 (.1.2.3.4.5) Potri.007G106800 [exp] 405 / 2e-130 AT1G53570 582 / 0.0 MAP KINASE KINASE KINASE 3, mitogen-activated protein kinase kinase kinase 3 (.1.2.3.4.5) Potri.005G135100 [exp] 352 / 2e-109 AT5G66850 589 / 0.0 mitogen-activated protein kinase kinase kinase 5 (.1) Potri.007G039800 [exp] 349 / 2e-108 AT5G66850 511 / 3e-173 mitogen-activated protein kinase kinase kinase 5 (.1) Potri.002G129100 [exp] 313 / 3e-94 AT5G66850 441 / 5e-145 mitogen-activated protein kinase kinase kinase 5 (.1) Potri.014G035500 [exp] 312 / 1e-93 AT5G66850 453 / 4e-149 mitogen-activated protein kinase kinase kinase 5 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024645 [exp] 948 / 0 AT1G63700 905 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Lus10032279 [exp] 946 / 0 AT1G63700 904 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Lus10027496 [exp] 892 / 0 AT1G63700 855 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Lus10039250 [exp] 847 / 0 AT1G63700 818 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Lus10014976 [exp] 761 / 0 AT1G63700 704 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Lus10038858 [exp] 731 / 0 AT1G63700 668 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Lus10002096 [exp] 413 / 2e-127 AT2G13680 1077 / 0.0 ARABIDOPSIS THALIANA GLUCAN SYNTHASE-LIKE 2, callose synthase 5 (.1) Lus10000829 [exp] 369 / 1e-116 AT1G53570 537 / 0.0 MAP KINASE KINASE KINASE 3, mitogen-activated protein kinase kinase kinase 3 (.1.2.3.4.5) Lus10019635 [exp] 343 / 9e-106 AT5G66850 561 / 0.0 mitogen-activated protein kinase kinase kinase 5 (.1) Lus10009339 [exp] 342 / 4e-105 AT5G66850 568 / 0.0 mitogen-activated protein kinase kinase kinase 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF14531 [poplar] [flax] Kinase-like Kinase-like
Representative CDS sequence Show only first row Show all	>Potri.003G129000.4 pacid=42787222 polypeptide=Potri.003G129000.4.p locus=Potri.003G129000 ID=Potri.003G129000.4.v4.1 annot-version=v4.1 ATGCGGTCATGGTGGGGGAAGTCTTCATCCAAAGAGGAAAAGAAGAAAGCAAACAAGGAAAGTTTCATTGATACAATAAATAGGAAATTTAAGATTACAT CAAAGGAAAAGAGCAACAATAGATCAGGAGGATCTCGGAGATGTTGTAAAGATACTCTTTCAGAAAGGGTTTCTTTGTCCCGCGTTCCATCAAGATCACC ATCTCCCTCCACACATGTATCACGTTGTCAAAGTTTTGCTGAAAGGCCTCAGGCTCAACCACTTCCACTTCCACTTCCAGGGGTGCCTCATACTAAAATT GGGCGCTGTGATTCTGGAATTAGTGCTTCAGTGAAACCAGGATTGGATGGAGGGGGCAAACCATTGCATCTTTTGCCCCTACCGAGACCAGGACATGTCC TTAATAGACTGGACCAAGCAGATACAGCAGGGGATTTAGCCACTGCCTCTGTGTCCAGTGATAGCTCCATAGATAGTGATGATCTGCCTGACTCGCGTGT CCTTAGCCCTTTCACGTCGGACTATGAAAATGGGAACAGAACTGCTGTGAACAGCCCTCCAAGCGTGATGCGACAGGATCAATCCCCTATCATAAATAGA AAGAACTCAAGAGAAACTCTGAAACATGCTAATTTACCTGCAAATAATCAGACCTTGTCTACACCACCAAAACGGGCAATTTTTAGCTCTCAAGTGCAAA ATTTACAGATTCCTCATCGAGTAGCATTCTTTAGTGCTCCAGACAGCTCAATGTCAAGTCCTTCTAGAAGCCCAATGAGAGCATTTGGCACTGAGCAAGT TATCAACAATGGTTTCTGGGCAGGAAAAACTTACTCAGATATTGGTTTACTAGGATCTGGACAGTGCTCAAGTCCAGGTTCAGGCTATAATTCTGGGCAG AACTCAATAGGTGGAGATATGTCAGGACAGCTTCTTTGGCCAAACAGTAGATGCAGCCCTGAGTGTTCTCCATTACCTAGCCCCAGAGTGATTAGCCCAG GTCCCAGCTCCAGAATACACAGTGGTGCTGTCACTCCTCTGCACCCACGAGCTGCTGGGGTTACCATAGAGTCGCCTACAAGCCGGCCAGATGATGGAAA GCAACAAAGTCACCGCTTGCCCCTTCCACCGATAACAATCTCCAACACCCATCCCTTTTCTCCTACCTATTCCGCCTCAACATCTCCTTCAGTGCCTCGA AGTCCTAGTAGGATGGAGAACCCAACAAGTTCTGGTACACGCTGGCAGAAGGGTCGTATGCTTGGGAGAGGCAGTTTTGGAGATGTATATCTCGGGTTTA ACAGAGAAAGAGGTGAGATGTGTGCAATGAAGGAGGTAACTCTATTTTCAGATGATGCAAAATCAAAGGAAAGCGCACAGCAGCTGGGACAGGAAATTGG GCTTCTGAGTCGCTTACGTCATCCTAATATAGTGCAGTACTATGGATCTGAAACGGTGGATGACAAATTATATATATACTTGGAGTATGTGTCTGGTGGC TCCATCTATAAACTGCTTCAAGAATATGGCCAATTTGGTGAAATAGCTATTCGTAGCTATACTCAACAAATCCTGCGTGGGCTTGCTTATTTGCATGCTA AAAAAACTGTCCACAGAGACATTAAAGGGGCTAATATTCTGGTGGATCCCACGGGTCGTGTTAAACTGGCAGATTTTGGGATGGCAAAGCATATATCTGG GCAGTCTTGTCCATTATCATTCAAAGGAAGCCCTTACTGGATGGCACCTGAGGTGATAAAAAATTCAAATGGTTGTAATCTTGCTGTTGATATATGGAGC CTTGGGTGCACTGTTTTGGAGATGGCAACAACAAAACCACCTTGGAGCCAATATGAAGGGGTTAGGAAAATCGAAGTTCCTGCTATGTTTAAGATTGGAA ATAGCAAGGAACTTCCAGAGATTCCTGATAATCTGTCAGATGATGGAAAGGACTTTGTGAGGCAGTGTTTGCAACGGAACCTATCACATCGCCCTACAGC TGCTCAACTTTTGGAGCACCCTTTTGTGAAAAATGTTGCTCCGATGGAGAGGCCGTTTTTGTCCCCAGAGCTTTCAGAAGAACTGCCTGCAATTATGAAT TCAGGAAGATCAATGGGAATTGGACCTGCAAGAAATGTTTCAGGCTTTGACTCAGAAGGGATTTCTATGCATCAATCTAGAGCCACAAAAATTGGTTCAG GGATCAGTGATGCCCATATGAAGAACTCATCATGCCCAGTGTCTCCTATCGGGAGCCCTCATCTATATTCAAGATCCCCGCTGAATTTGAGTGGAAGGAT GTCTCCATCTCCTATATCTAGCCCTCATACTGCATCTGGTTCATCCACGCCTCTCACTGGTGGTTGTGGTGCCATCCCATTTCATCATGCAAAGCAGCAC ATAATGTACTTGCAAGAAAGCAAGGGAATGGTCCCTGGGTCCCAAAGTAGTTTCTATCCCAATAACAACAACCTTTATCAGGAACCAAAGCCTGACCTAT TTCGAGGTATGTCACAAGCCTCTTGTGTTTTCCGGGAAATAATTTCATCAGAAAACAGCAATCCTGGAAATCAGTTGGGATGGCCTGAACTCTATGATGG GCACCCTGTTTTAGCTGATCGTGTGTCCCAGCAGCTCTTAAGGGATCATATGAAATTGAAGCCATCCCTGGACCTGAATCCAAACTCGTCAATTCGTGGC CGTACCAATGGAATCTAA
AA sequence Show only first row Show all	>Potri.003G129000.4 pacid=42787222 polypeptide=Potri.003G129000.4.p locus=Potri.003G129000 ID=Potri.003G129000.4.v4.1 annot-version=v4.1 MRSWWGKSSSKEEKKKANKESFIDTINRKFKITSKEKSNNRSGGSRRCCKDTLSERVSLSRVPSRSPSPSTHVSRCQSFAERPQAQPLPLPLPGVPHTKI GRCDSGISASVKPGLDGGGKPLHLLPLPRPGHVLNRLDQADTAGDLATASVSSDSSIDSDDLPDSRVLSPFTSDYENGNRTAVNSPPSVMRQDQSPIINR KNSRETLKHANLPANNQTLSTPPKRAIFSSQVQNLQIPHRVAFFSAPDSSMSSPSRSPMRAFGTEQVINNGFWAGKTYSDIGLLGSGQCSSPGSGYNSGQ NSIGGDMSGQLLWPNSRCSPECSPLPSPRVISPGPSSRIHSGAVTPLHPRAAGVTIESPTSRPDDGKQQSHRLPLPPITISNTHPFSPTYSASTSPSVPR SPSRMENPTSSGTRWQKGRMLGRGSFGDVYLGFNRERGEMCAMKEVTLFSDDAKSKESAQQLGQEIGLLSRLRHPNIVQYYGSETVDDKLYIYLEYVSGG SIYKLLQEYGQFGEIAIRSYTQQILRGLAYLHAKKTVHRDIKGANILVDPTGRVKLADFGMAKHISGQSCPLSFKGSPYWMAPEVIKNSNGCNLAVDIWS LGCTVLEMATTKPPWSQYEGVRKIEVPAMFKIGNSKELPEIPDNLSDDGKDFVRQCLQRNLSHRPTAAQLLEHPFVKNVAPMERPFLSPELSEELPAIMN SGRSMGIGPARNVSGFDSEGISMHQSRATKIGSGISDAHMKNSSCPVSPIGSPHLYSRSPLNLSGRMSPSPISSPHTASGSSTPLTGGCGAIPFHHAKQH IMYLQESKGMVPGSQSSFYPNNNNLYQEPKPDLFRGMSQASCVFREIISSENSNPGNQLGWPELYDGHPVLADRVSQQLLRDHMKLKPSLDLNPNSSIRG RTNGI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G63700		EMB71, MAPKKK4,...	YODA, MAP KINASE KINASE KINASE...		Potri.003G129000 [exp]	0	1	YDA.1
AT5G20930		TSL	TOUSLED, Protein kinase superf...		Potri.009G155400 [exp]	8.06	0.7580
AT3G61690			nucleotidyltransferases (.1)		Potri.015G020400 [exp]	9.79	0.7550
AT3G61690			nucleotidyltransferases (.1)		Potri.014G097600 [exp]	10.00	0.7561
AT1G79000		ATHAC1, ATHPCAT...	ARABIDOPSIS THALIANA P300/CBP ...		Potri.014G000500 [exp]	20.63	0.7329	Pt-HAC1.3
AT1G25570			Di-glucose binding protein wit...		Potri.010G129300 [exp]	20.97	0.6909
AT1G02890			AAA-type ATPase family protein...		Potri.014G131000 [exp]	29.93	0.7215
AT3G54280		RGD3, ATBTAF1, ...	ROOT GROWTH DEFECTIVE 3, DNA b...		Potri.013G068400 [exp]	31.38	0.7365
AT1G24300			GYF domain-containing protein ...		Potri.017G069220 [exp]	32.43	0.7437
AT1G63700		EMB71, MAPKKK4,...	YODA, MAP KINASE KINASE KINASE...		Potri.001G102900 [exp]	33.77	0.7323
AT5G12430		TPR16	tetratricopeptide repeat 16, H...		Potri.009G050200 [exp]	34.94	0.7243

Compare expression of checked genes

Potri.003G129000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.