Plant FIBer expression Database

Potri.003G129400 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G52430 193 / 1e-56 hydroxyproline-rich glycoprotein family protein (.1)
AT4G25620 148 / 9e-40 hydroxyproline-rich glycoprotein family protein (.1)
AT1G63720 128 / 5e-33 unknown protein
AT1G76660 106 / 7e-25 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G102200
[exp]
624 / 0 AT5G52430 232 / 2e-71 hydroxyproline-rich glycoprotein family protein (.1)
Potri.012G144200
[exp]
280 / 5e-89 AT4G25620 382 / 2e-128 hydroxyproline-rich glycoprotein family protein (.1)
Potri.002G001100
[exp]
112 / 1e-26 AT1G76660 487 / 1e-170 unknown protein
Potri.005G260000
[exp]
107 / 4e-25 AT1G76660 453 / 7e-158 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10024642
[exp]
291 / 6e-94 AT5G52430 261 / 2e-82 hydroxyproline-rich glycoprotein family protein (.1)
Lus10032276
[exp]
280 / 1e-89 AT5G52430 265 / 8e-84 hydroxyproline-rich glycoprotein family protein (.1)
Lus10028779
[exp]
220 / 1e-64 AT5G52430 191 / 6e-54 hydroxyproline-rich glycoprotein family protein (.1)
Lus10017503
[exp]
206 / 2e-59 AT5G52430 183 / 5e-51 hydroxyproline-rich glycoprotein family protein (.1)
Lus10039253
[exp]
201 / 2e-58 AT5G52430 374 / 6e-125 hydroxyproline-rich glycoprotein family protein (.1)
Lus10027498
[exp]
198 / 1e-56 AT5G52430 348 / 2e-113 hydroxyproline-rich glycoprotein family protein (.1)
Lus10016050
[exp]
111 / 1e-26 AT1G76660 438 / 5e-152 unknown protein
Lus10025171
[exp]
111 / 6e-26 AT1G76660 420 / 1e-141 unknown protein
PFAM info
Representative CDS sequence
>Potri.003G129400.3 pacid=42787101 polypeptide=Potri.003G129400.3.p locus=Potri.003G129400 ID=Potri.003G129400.3.v4.1 annot-version=v4.1
ATGAGAGACGTGAATGGAGAGTCGAGAGCTGCAAACAATACTCTAGAGACTATAAACGCTGCCGCTACTGCGATCGCCTCTGCTGAGAACCGTGTGCCTC
AAGCTATGGTTCAGAAGCAAAGATGGAGAAGCCACTGGAGCATATATTGGTGTTTTGGATATCAGAAGAGCAAAAGGCAAATTGGGCATGCTGTCCTTTT
TCCTGAATCATCAGCTCCTGGAAGTGGTGCTCCTGCGGCTGAAAATTCAGCCCAAGCACCAGAAGTCACGTTCCCCTTTGTTGCACCTCCCTCCTCCCCT
GCCTCTTTCTTTCAATCAGAACCCCCTTCTGTTACACAATCACCGGCAGGTTTAGTGTCCCGCACCTCTATATCTGCTAGCATGTACTCTCCCAGTGGGC
CTGCCTCTATTTTTGCTATTGGTCCTTATGCCCATGAAACCCAGTTAGTCTCACCACCTGTGTTCTCAACTTTTACCACTGAACCATCAACTGCTCCTTT
CACTCCTCCTCCCGAGTCTGTCCACTTGACTACACCTTCCTCGCCTGAGGTGCCTTTCGCTCAATTAATTGACCCTACCCTGCGAAATGGTGTTACTGGT
TTGAGATTCCCATTTGATTTTCAGTCTTATCAGTTTCATCCTGGAAGCTCAGTTGGCCAACTCATTTCACCTAGCTCTGGCATTTCAGGCTCAGGCACAT
CATCTCCTTTCCCTGATGGTGAATTTGCTGTTGGTGGTCCTCACTCTCCTGAATTCCGAATGGGTCCAAAGCTCTTGAACCTTGATAAGCTTTCCACCCG
TGAATGGGGATCCTATCAAGATTCAGGGGCTCTGACTCCAGATTCTGTGAGGCACGGATCGCCCAACTTTCTCCTGCATCGTCAGTTTTCTGATGTTGCT
TCACATCCTCGTTCAGAAAATGGACACGATGATGATCAAGTTGTTAATCATAGATTCTCTTTCGAGTTAAGTGTCAAAGATGCCTCAAGATGTGTGGAAG
AGAAGCCAGCATGTTCTATTAAAACTGTGCCAGAATATGTGGAAAATGGAACAAAAGCTAAAGAAGAAGAGAATTATGGTGAATTGATACAAAGCTTTGA
GCGTCGATCTGGTGACACATCTAATGATACACCAGAGACACCTTCAACAGATGGGGAGGCACCACAGCATCGAAAGCAACAGCCCATCACTCTTGGCTCT
GTTAATGAATTTAACTTTGACAATGCTGATGAAGGAGATTCACACAACCCTAGTAGTTCGAACTGGTGGGCTAATGGAAGTGTTATTGGGAAGGAGGGTG
AAACAACCAAGAACTGGTCCTTCTTCCCTATGGTGCAGTCGGATGTTAGCTAG
AA sequence
>Potri.003G129400.3 pacid=42787101 polypeptide=Potri.003G129400.3.p locus=Potri.003G129400 ID=Potri.003G129400.3.v4.1 annot-version=v4.1
MRDVNGESRAANNTLETINAAATAIASAENRVPQAMVQKQRWRSHWSIYWCFGYQKSKRQIGHAVLFPESSAPGSGAPAAENSAQAPEVTFPFVAPPSSP
ASFFQSEPPSVTQSPAGLVSRTSISASMYSPSGPASIFAIGPYAHETQLVSPPVFSTFTTEPSTAPFTPPPESVHLTTPSSPEVPFAQLIDPTLRNGVTG
LRFPFDFQSYQFHPGSSVGQLISPSSGISGSGTSSPFPDGEFAVGGPHSPEFRMGPKLLNLDKLSTREWGSYQDSGALTPDSVRHGSPNFLLHRQFSDVA
SHPRSENGHDDDQVVNHRFSFELSVKDASRCVEEKPACSIKTVPEYVENGTKAKEEENYGELIQSFERRSGDTSNDTPETPSTDGEAPQHRKQQPITLGS
VNEFNFDNADEGDSHNPSSSNWWANGSVIGKEGETTKNWSFFPMVQSDVS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G52430 hydroxyproline-rich glycoprote... Potri.003G129400
[exp]
0 1
AT1G08230 ATGAT1 L-GAMMA-AMINOBUTYRIC ACID TRAN... Potri.008G026700
[exp]
1.00 0.9574 PtrProT5
AT3G04070 NAC ANAC047 NAC domain containing protein ... Potri.013G054000
[exp]
2.00 0.9524
AT2G46870 B3 NGA1 NGATHA1, AP2/B3-like transcrip... Potri.011G149700
[exp]
4.89 0.9543
Potri.001G131600
[exp]
8.12 0.9527
AT2G25290 Phox1 Phox1, Octicosapeptide/Phox/Be... Potri.018G121100
[exp]
17.88 0.9066
AT1G06050 Protein of unknown function (D... Potri.007G130400
[exp]
18.43 0.9328
AT5G04250 Cysteine proteinases superfami... Potri.008G036900
[exp]
19.62 0.9081
AT1G77810 Galactosyltransferase family p... Potri.002G089800
[exp]
20.78 0.9274
AT1G61560 ATMLO6, MLO6 MILDEW RESISTANCE LOCUS O 6, S... Potri.008G041400
[exp]
21.44 0.9456 Pt-MLO12.2
AT5G63520 unknown protein Potri.004G005700
[exp]
21.54 0.9329

Potri.003G129400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.