Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G63770 1594 / 0 Peptidase M1 family protein (.1.2.3.4.5) AT4G33090 102 / 4e-22 ATAPM1, APM1 aminopeptidase M1 (.1) AT5G13520 59 / 2e-08 peptidase M1 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G101975 [exp] 1433 / 0 AT1G63770 1269 / 0.0 Peptidase M1 family protein (.1.2.3.4.5) Potri.001G102051 [exp] 733 / 0 AT1G63770 692 / 0.0 Peptidase M1 family protein (.1.2.3.4.5) Potri.001G102126 [exp] 528 / 0 AT1G63770 482 / 2e-165 Peptidase M1 family protein (.1.2.3.4.5) Potri.006G224500 [exp] 109 / 5e-24 AT4G33090 1356 / 0.0 aminopeptidase M1 (.1) Potri.017G039200 [exp] 99 / 7e-21 AT4G33090 1102 / 0.0 aminopeptidase M1 (.1) Potri.008G045900 [exp] 61 / 3e-09 AT5G13520 965 / 0.0 peptidase M1 family protein (.1) Potri.010G215700 [exp] 52 / 1e-06 AT5G13520 926 / 0.0 peptidase M1 family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024641 [exp] 1632 / 0 AT1G63770 1610 / 0.0 Peptidase M1 family protein (.1.2.3.4.5) Lus10025002 [exp] 113 / 4e-25 AT4G33090 1196 / 0.0 aminopeptidase M1 (.1) Lus10026448 [exp] 108 / 1e-23 AT4G33090 1389 / 0.0 aminopeptidase M1 (.1) Lus10025001 [exp] 108 / 1e-23 AT4G33090 1385 / 0.0 aminopeptidase M1 (.1) Lus10040361 [exp] 49 / 2e-05 AT5G13520 729 / 0.0 peptidase M1 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0126 [poplar] [flax] Peptidase_MA PF01433 [poplar] [flax] Peptidase_M1 Peptidase family M1 domain CL0159 [poplar] [flax] E-set PF11940 [poplar] [flax] DUF3458 Domain of unknown function (DUF3458) Ig-like fold
Representative CDS sequence Show only first row Show all	>Potri.003G129500.1 pacid=42785336 polypeptide=Potri.003G129501.1.p locus=Potri.003G129500 ID=Potri.003G129500.1.v4.1 annot-version=v4.1 ATGGCTAGACTGATTCTTTCATGCAAAAGTCCCTGTCTTGCAAAGACCAGCCTCTTGGGTTTGATCTCTTCTGCTCCTCTTCAAACTATAGGCCAAGCTA GTTGCTTTCAGAATTCAGTGAGAAATATCTCGAAACACAGCGGTTTCCTCAGTTCAGAGGCTGCCTTTTCAAGGAAGTCTTGGCTTTCATACCCAGCATT ATATAGAGATAAGCAAGGGAGAAGGAGGCTAATTTGTGCAGTCGCCACAGAACCGTTACCCAAGCAAGTTGAAGAATCCAAAATGGACACTCCAAAAGAA ATATTTCTCAAGGATCACAAGTTGCCTGACTATTACTTTGATTCAGTGGATTTGAATTTTTTGCTGGGCGAGGAGAAAACGATTGTTAGTTCAAAAATAA CTGTTTTCCCCAGAGTTGATGGTTCTTCTCCACTAGTTTTGGATGGAGCAGACTTGAAGTTGCTTTCAGTTAAAGTCAATGGCGAGGAACTGAAGAATGG AGATTATCATTTGGATTCACGCCATTTAACAATCCCATCACCACCTTCTGGTACATTTATGCTGGAAATTGTTACCGAGATATATCCCCAGAAGAACACA TCATTGGAGGGGCTTTACAAGTCATCTGGGAATTTTTGCACTCAATGTGAAGCAGAGGGTTTCCGCAAAATTACATTTTATCAGGATCGCCCTGATATAA TGGCAAAATACACTGTTCGGATTGAAGCTGATAAATCTTTGTACCCAGTATTGCTGTCTAATGGAAATCTCTTGGGACAAGGAGACCTTGAGGGTGGTAA GCATTATGCTCTATGGGAGGATCCCTTCAAGAAACCTTGCTACTTGTTTGGGTTGGTTGCTGGACAGTTGGAGAGCAGAGACGACACATTTGTAACCTCT TCTGGTCGAAATGTGTCACTAAGAATTTGGACCCCTGCACAAGATGTACACAAGACAGCACATGCCATGTATTCGCTTAAAGCAGCCATGAAATGGGATG AGGATGTTTTTGGTCTTGAATATGACCTGGATCTCTTTAACATTGTTGCTGTCCCCGACTTTAACATGGGAGCCATGGAGAACAAAAGTTTGAATATTTT CAATTCCAAACTTGTTTTGGCATCCCCAGAAACTGCTTCAGATGCAGATTATGCTGCAATTCTTGGAGTTATTGGTCATGAGTATTTCCACAACTGGACA GGCAACAGAGTGACTTGTCGTGATTGGTTCCAGCTCAGCTTAAAGGAAGGTCTCACTGTATTTCGTGATCAGGAGTTTTCATCTGACATGGGGAGCCGCA CTGTTAAGAGGATTGCTGATGTTTCAAGGCTTCGAATTTCTCAGTTTCCTCAGGATGCAGGTCCTATGGCTCATCCTGTGCGACCACATTCATATATCAA GATGGACAACTTCTACACTGTGACGGTGTATGAAAAGGGAGCTGAAGTTGTCAGGATGTACAAGACCTTATTAGGGAGTCAAGGTTTCAGAAAGGGCATG GATCTTTATTTTAAGAGACATGATGGTCAAGCTGTGACATGCGAAGATTTTTTTGCTGCCATGCGAGATGCAAATGATGCAGATTTCGCTAATTTCTTAC AATGGTATTCCCAAGCTGGTACCCCTCTGGTGAAAGTTACTTCATCTTATGATGCTGCAGCTCATACTTTCACCTTAAAGTTCAGTCAAGAAGTACCACC CACTCCAGGGCAGCCAGTTAAAGAACCCATGTTCATTCCTGTGGTATCAGGGCTGCTGGATCCAAGTGGCAAGGACATGCCACTCTCCTCTGTGTATCAT GATGGGGCATTACGGTCCATTGCAAACAACAGCGAACCAGCCTATAGTACAATTCTTAGAGTAACCAAGAAAGAGGAAGAATTTGTCTTCTCCGATATAC ATGAACGGCCAGTACCTTCTCTATTGCGGGGTTTCAGCGCTCCAGTCCGTCTTGAATCTGATCTCTCTGATAGTGATCTATTTTTCCTCCTTGCTCATGA TTCAGATGACTTCAACCGTTGGGAGGCTGGACAAGTCTTAGCAAGGAAGCTGATGCTCAGCTTAGTTGTTGATTTCCAACAAGGGAAACCTTTGGTTCTG AACCCAAAGTTTGTGCAAGGGCTAAGAAGCATACTTTGTGACTCAAGTTTGGATAAGGAATTTATTGCAAAGGCAATAACTCTACCAGGTGAAGGAGAAA TAATGGACATGATGGAAGTTGCAGATCCTGATGCTGTTCATGCTGTTCGATCTTTCATCAGGAAGCAGCTTGCTTCTGAACTGAAAGCAGATTTTCTAAG CTTGGTTGAGAACAATAGGAGCTCAGAAGAGTATGTCTTTAACTATCCTAATATGGCCAGGCGTGCTCTGAAGAATATTGCTCTTGCATATCTTGCATCA CTCGAAGACCAGGAGTTAACTGAGCTTGCACTACATGAGTACAAAACTGCCACAAATATGACTGAGCAATTTGCAGCTTTGGCCGCCATAGCCCAGAATC CTGGGAAAATTCATGATGAAGTACTGGCTGACTTCTACACCAAGTGGCGGGATGACTTTTTGGTTGTGAATAAATGGTTTGCTCTTCAAGCCATGTCCGA TGTTCCTGGTAATGTTGAAAATGTTCGCAACCTCTTAAGTCATCCAGCATATGATTTGCGCAATCCAAACAAGGTGTACTCACTCATTGGAGGATTCTGC AGCTCTCCTGTGAATTTCCATGCAAAGGATGGGTCAGGGTACAAGTTCTTGGGAGAGATTGTGGTGCAACTGGACAAAATTAATCCTCAGGTGGCCTCCC GCATGGTGTCAGCCTTCTCAAGATGGAGACGTTATGATGAAACCCGACAAAACCTCGCCAAGGCACAGCTGGAGATGATCGTGTCTGCCAATGGTCTGTC GGAGAATGTATTTGAGATCGCCTCAAAATGCTTAGCTGCTTAA
AA sequence Show only first row Show all	>Potri.003G129500.1 pacid=42785336 polypeptide=Potri.003G129501.1.p locus=Potri.003G129500 ID=Potri.003G129500.1.v4.1 annot-version=v4.1 MARLILSCKSPCLAKTSLLGLISSAPLQTIGQASCFQNSVRNISKHSGFLSSEAAFSRKSWLSYPALYRDKQGRRRLICAVATEPLPKQVEESKMDTPKE IFLKDHKLPDYYFDSVDLNFLLGEEKTIVSSKITVFPRVDGSSPLVLDGADLKLLSVKVNGEELKNGDYHLDSRHLTIPSPPSGTFMLEIVTEIYPQKNT SLEGLYKSSGNFCTQCEAEGFRKITFYQDRPDIMAKYTVRIEADKSLYPVLLSNGNLLGQGDLEGGKHYALWEDPFKKPCYLFGLVAGQLESRDDTFVTS SGRNVSLRIWTPAQDVHKTAHAMYSLKAAMKWDEDVFGLEYDLDLFNIVAVPDFNMGAMENKSLNIFNSKLVLASPETASDADYAAILGVIGHEYFHNWT GNRVTCRDWFQLSLKEGLTVFRDQEFSSDMGSRTVKRIADVSRLRISQFPQDAGPMAHPVRPHSYIKMDNFYTVTVYEKGAEVVRMYKTLLGSQGFRKGM DLYFKRHDGQAVTCEDFFAAMRDANDADFANFLQWYSQAGTPLVKVTSSYDAAAHTFTLKFSQEVPPTPGQPVKEPMFIPVVSGLLDPSGKDMPLSSVYH DGALRSIANNSEPAYSTILRVTKKEEEFVFSDIHERPVPSLLRGFSAPVRLESDLSDSDLFFLLAHDSDDFNRWEAGQVLARKLMLSLVVDFQQGKPLVL NPKFVQGLRSILCDSSLDKEFIAKAITLPGEGEIMDMMEVADPDAVHAVRSFIRKQLASELKADFLSLVENNRSSEEYVFNYPNMARRALKNIALAYLAS LEDQELTELALHEYKTATNMTEQFAALAAIAQNPGKIHDEVLADFYTKWRDDFLVVNKWFALQAMSDVPGNVENVRNLLSHPAYDLRNPNKVYSLIGGFC SSPVNFHAKDGSGYKFLGEIVVQLDKINPQVASRMVSAFSRWRRYDETRQNLAKAQLEMIVSANGLSENVFEIASKCLAA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G63770			Peptidase M1 family protein (....		Potri.003G129500 [exp]	0	1
AT1G77490		TAPX	thylakoidal ascorbate peroxida...		Potri.005G179200 [exp]	2.23	0.7528
AT3G16230			Predicted eukaryotic LigT (.1....		Potri.001G186600 [exp]	2.82	0.7804
AT3G10330			Cyclin-like family protein (.1...		Potri.006G048400 [exp]	7.07	0.7054	TFIIB1.2
AT1G34380			5'-3' exonuclease family prote...		Potri.013G114400 [exp]	8.00	0.7529
AT2G03620		AtMRS2-5, AtMGT...	magnesium transporter 3 (.1.2)		Potri.010G158100 [exp]	9.00	0.7134
AT4G01100		ADNT1	adenine nucleotide transporter...		Potri.003G137500 [exp]	10.67	0.7221
AT4G31270	Trihelix		sequence-specific DNA binding ...		Potri.006G279100 [exp]	12.48	0.6994
AT5G36930			Disease resistance protein (TI...		Potri.011G012475 [exp]	16.52	0.7714
AT1G55150			DEA(D/H)-box RNA helicase fami...		Potri.013G158000 [exp]	17.74	0.6873	Pt-P68.2
AT1G63900		DAL1	DIAP1-like protein 1, E3 Ubiqu...		Potri.014G138000 [exp]	17.83	0.6511	Pt-ZCF61.1

Compare expression of checked genes

Potri.003G129500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.