Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G23440 1333 / 0 Disease resistance protein (TIR-NBS class) (.1) AT5G56220 618 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G472200 [exp] 632 / 0 AT5G56220 1305 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.017G105201 [exp] 47 / 0.0001 AT4G12010 549 / 4e-174 Disease resistance protein (TIR-NBS-LRR class) family (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032275 [exp] 1382 / 0 AT4G23440 1274 / 0.0 Disease resistance protein (TIR-NBS class) (.1) Lus10024639 [exp] 913 / 0 AT4G23440 831 / 0.0 Disease resistance protein (TIR-NBS class) (.1) Lus10024640 [exp] 454 / 3e-151 AT4G23440 424 / 2e-140 Disease resistance protein (TIR-NBS class) (.1) Lus10029921 [exp] 51 / 3e-06 AT5G36930 105 / 7e-26 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10003749 [exp] 44 / 0.0009 AT5G17680 517 / 5e-161 disease resistance protein (TIR-NBS-LRR class), putative (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0173 [poplar] [flax] STIR PF13676 [poplar] [flax] TIR_2 TIR domain
Representative CDS sequence Show only first row Show all	>Potri.003G129600.6 pacid=42787079 polypeptide=Potri.003G129600.6.p locus=Potri.003G129600 ID=Potri.003G129600.6.v4.1 annot-version=v4.1 ATGCCCTTGGAGTCGGGAGATTTTGTCAGGATGGATCTCCGTGAGGATAGCTCTAGATTCGGGTTGTTACCAGTGACTACTTCAAGGATTTCATCCTCGT CGTCAGCATTCTTTTCAGCGAATCAGTCACCCTTCTTCTCTCCAAGATCACCAACATGTCAAGTATCGGAATCAACACGTTCGGATGCTCAATATGACAG CACTCATCTTAGCGGCGATCCCCTTAGCTCTAGTTCAGGAATTCCAGATCCTCAATCTCTAGCAAATACCAGAGATGCCTTGGCAGATATGACAAGAGAT CCAGTTTCTGGCATTGCAAATGATTTTCAGAAGTTCAATCGTATATCATCTTCAACTGGCATCTCTAGTAGCACTCTATGTATTTACAATTATGCCCGTG ATAGAGGTTATTCAGGGTTTAGAGAAAAGCCAAGAAAGCATGGGAGAAGCCATGGGATGTCATATACTCCAGTTTCAGTTTCCTCTTGTAAACTCAGGAG TTGTGATGTTTTCATAGGTTTGCATGGTCGTAAACCTTCTTTGATGAGGTTTGCTAATTGGCTCCGTGCTGAGTTGGAGGTTCAAGGGATGAGTTGTTTT GTATCTGATAGAGCTCGATGTAGAAACTCTCGCAAAAATGGAATTGTTGACAGGGCGATGGATGTTTCTTCTTTTGGCATTGTAATATTAACAAAGAAGT CCTTCAGAAACCCATATGCTATTGAGGAGTTGCAATATTTTGAAAGCAAAAAGAATTTGGTCCCGGTATTCTTTGATCTGAGTCCAGATGATTGCCTTGT CAGGGATATCATTGAGAAGAGGGGGGAGTTGTGGGAAAAACATGGGGGCGAGCTATGGCATTTGTATGGTGGTTTGGAGAATGAGTGGAAGGAAGCTGTT AATGGCATCTCTCGGGTTGATGAGTGGAAACTGGAAGCCCAGGAGGGTAACTGGAGAGATTGCATATTGAGAGCTGTCACGCTCCTGGCTTTGAGATTAG GAAGGAGAAGTGTTGTGGAAAGGTTGACAAAGTGGAGAGAGGTGGTGGAAAAGGAAGAGTTCCCTTTCCCTCGAAATGAGAACTTTGTTGGCAGGAAGAA AGAATTGTCTGAGCTAGAATTTATACTTTTTGGCGATGTTAGTGGCAATTCTGAAAGAGATTACTTTGAACTGAAGGCTAGACCCAGGAGAAAGAATTTG ACAGTCGGATGGAATAAGAACAGTTCAGTGGAGGAAAAACGACGAGAGCAGCAAGGGGACAATAGCAGCGAGAAGGGTAAAGAACCAGTTGTATGGAAGG AGTCAGAAAGGGAGATAGAGATGCAAAGTGGTGATTTCTCTCAAAGGCAGCACCTAGTAAAACCCAAAAGCAGTGGGCGATATGGAAAGAGAAAAAGATC AACAAAGATTTTATATGGAAAAGGAATTGCTTGTGTCTCGGGGGAATCGGGAATCGGCAAGACAGAACTTCTTCTGGAGTTCGCATACAGATATCACCAG AGGTACAAGATGGTTCTGTGGATTGGAGGAGAAAGCAGGTATATCAGGCAAAATTATCTGAACCTCAGGTCATTTTTAGATGTTGATATTGGGGTTGAGA ATTACTCAGGGAAAAGCAGGATTAGAAGTTTTGAAGAGCAAGAAGAGGAAGCTATTTCTAAAGTTCGCAAGGAGCTTCTGAGAAACATACCATTTTTGGT TGTGATTGATAACTTGGAAAGCGAGAAGGATTGGTGGGATCACAAAATTGTGATGGATCTTCTTCCCCGTTTTGGTGGAGAGACCCACATCATAATATCC ACAAGGCTACCACGTGTGATGAATTTGGAACCTTTGAAACTCTCTTATTTGTCTGCAGTTGAGGCAATGTGTTTAATGCAGGGAAGTGATAAGGATTATT CTATTGCAGAAATTGATGCTCTCAGGGTTATTGAGGAGAAAGTAGGTAGGTTAACTTTGGGCCTTGCAATCGTTGGAGCCATTTTATCTGAGCTTCCAAT TAATCCAAGTAGGCTGTTGGACACCATAAATAGAATGCCCTTGAGAGAGATGTCATGGAGTGGTAGAGAAGCTCATTCAATGAGGAAAAACACTTTCCTT CTGCAACTCTTCGAGGTATGTTTTTCTATATTTGATCATGCGGATGGGCCTAGGAGCTTGGCGACAAGGATGGTTCAGGCCAGTGCTTGGTTTGCACCAG CTGCAATTCCAGTTTCCCTATTAGCCCTAGCTGCAAAAAAGATTCCCGAGAAGCACAAGGGAACACACTTATGGAGAAAATTGTTGTCTTCTTTGAGTTG CGGCCTCTCTTCATCATACACCAAAAGATCAGAAGCAGAAGCATCTTCCATGCTGTTGAGATTTAATATTGCACGAAGTAGTACCAAGCAAGGCTATGTC CATGTCAATGAGCTCATCAAGCTTTATGCTCGCAAGAGAGGAGTCACTGGGGTTGCACAAGCCATGGTGCATGCTGTCATTAGTCGTGGGTCCGTATCCC ATCATTCAGAACACATATGGGCAGCATGCTTCTTGCTATTTGCATTTGGTACTGACCCTAAAGCTGTTGAGCTTAAGGTGTCAGAGTTGCTGTACTTAGT CAAACAAGTGGTTTTGCCTCTTGCCATTCGGACATTCATTACATTCTCTAGATGCAGTGCTGCTCTGGAACTCCTGCGCCTATGTACTAATGCTTTAGAA GCAGCAGATCAAGCTTTTGTTACTCCAGTTGAGAAATGGTTGGACAAATCACTATGCTGGAGACCCATCCAGACTAATGCTCAGTTGAATCCATACCTTT GGCAGGAGCTGGCTCTATCAAGAGCCACTGTGCTGGAAACTAGAGCCAAGTTAATGCTGAGAGGTGGACAATTTGATATCGGAGATGATCTAATAAGAAA GGCTATTTTTATTCGAACTTCAATTTGTGGAGATGACCATCCAGACACTGTATCTGCTCGTGAAACTCTAAGCAAACTCACCAGGCTTCATGCCAATGTT CAAATTCAGAATTCATCATAG
AA sequence Show only first row Show all	>Potri.003G129600.6 pacid=42787079 polypeptide=Potri.003G129600.6.p locus=Potri.003G129600 ID=Potri.003G129600.6.v4.1 annot-version=v4.1 MPLESGDFVRMDLREDSSRFGLLPVTTSRISSSSSAFFSANQSPFFSPRSPTCQVSESTRSDAQYDSTHLSGDPLSSSSGIPDPQSLANTRDALADMTRD PVSGIANDFQKFNRISSSTGISSSTLCIYNYARDRGYSGFREKPRKHGRSHGMSYTPVSVSSCKLRSCDVFIGLHGRKPSLMRFANWLRAELEVQGMSCF VSDRARCRNSRKNGIVDRAMDVSSFGIVILTKKSFRNPYAIEELQYFESKKNLVPVFFDLSPDDCLVRDIIEKRGELWEKHGGELWHLYGGLENEWKEAV NGISRVDEWKLEAQEGNWRDCILRAVTLLALRLGRRSVVERLTKWREVVEKEEFPFPRNENFVGRKKELSELEFILFGDVSGNSERDYFELKARPRRKNL TVGWNKNSSVEEKRREQQGDNSSEKGKEPVVWKESEREIEMQSGDFSQRQHLVKPKSSGRYGKRKRSTKILYGKGIACVSGESGIGKTELLLEFAYRYHQ RYKMVLWIGGESRYIRQNYLNLRSFLDVDIGVENYSGKSRIRSFEEQEEEAISKVRKELLRNIPFLVVIDNLESEKDWWDHKIVMDLLPRFGGETHIIIS TRLPRVMNLEPLKLSYLSAVEAMCLMQGSDKDYSIAEIDALRVIEEKVGRLTLGLAIVGAILSELPINPSRLLDTINRMPLREMSWSGREAHSMRKNTFL LQLFEVCFSIFDHADGPRSLATRMVQASAWFAPAAIPVSLLALAAKKIPEKHKGTHLWRKLLSSLSCGLSSSYTKRSEAEASSMLLRFNIARSSTKQGYV HVNELIKLYARKRGVTGVAQAMVHAVISRGSVSHHSEHIWAACFLLFAFGTDPKAVELKVSELLYLVKQVVLPLAIRTFITFSRCSAALELLRLCTNALE AADQAFVTPVEKWLDKSLCWRPIQTNAQLNPYLWQELALSRATVLETRAKLMLRGGQFDIGDDLIRKAIFIRTSICGDDHPDTVSARETLSKLTRLHANV QIQNSS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G23440			Disease resistance protein (TI...		Potri.003G129600 [exp]	0	1
AT1G47380			Protein phosphatase 2C family ...		Potri.014G031200 [exp]	1.41	0.7719
AT1G55610		BRL1	BRI1 like (.1.2)		Potri.001G472900 [exp]	8.00	0.7508
AT1G16670			Protein kinase superfamily pro...		Potri.010G221400 [exp]	10.09	0.7122
AT5G19330		ARIA	ARM repeat protein interacting...		Potri.002G052700 [exp]	10.24	0.7111
AT5G53460		GLT1	NADH-dependent glutamate synth...		Potri.012G011700 [exp]	12.96	0.6385	Pt-GLT1.3
AT3G02875		ILR1	IAA-LEUCINE RESISTANT 1, Pepti...		Potri.016G074100 [exp]	17.32	0.6789
AT1G76240			Arabidopsis protein of unknown...		Potri.002G011600 [exp]	18.43	0.6295
AT4G39350		ATH-A, CESA2, A...	cellulose synthase A2 (.1)		Potri.002G066600 [exp]	18.89	0.6782
AT2G41310		ARR8, ATRR3	RESPONSE REGULATOR 8, response...		Potri.001G027000 [exp]	19.44	0.6906
AT4G32410		AtCESA1, RSW1, ...	RADIALLY SWOLLEN 1, cellulose ...		Potri.018G029400 [exp]	20.44	0.6798	Pt-CESA1.2

Compare expression of checked genes

Potri.003G129600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.