Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G11400 319 / 8e-101 ARID ARID/BRIGHT DNA-binding domain;ELM2 domain protein (.1) AT2G46040 217 / 1e-62 ARID ARID/BRIGHT DNA-binding domain;ELM2 domain protein (.1) AT5G04110 126 / 1e-30 GYRB3 DNA GYRASE B3 (.1) AT2G03470 105 / 5e-24 MYB ELM2 domain-containing protein (.1.2) AT1G26580 103 / 5e-23 unknown protein AT1G13880 100 / 4e-22 ELM2 domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G101800 [exp] 585 / 0 AT4G11400 272 / 1e-86 ARID/BRIGHT DNA-binding domain;ELM2 domain protein (.1) Potri.014G086700 [exp] 287 / 1e-87 AT2G46040 247 / 2e-73 ARID/BRIGHT DNA-binding domain;ELM2 domain protein (.1) Potri.002G161100 [exp] 265 / 1e-79 AT2G46040 221 / 4e-64 ARID/BRIGHT DNA-binding domain;ELM2 domain protein (.1) Potri.017G091900 [exp] 128 / 2e-31 AT1G26580 218 / 2e-65 unknown protein Potri.004G118400 [exp] 124 / 3e-30 AT1G26580 219 / 2e-65 unknown protein Potri.010G159700 [exp] 109 / 5e-25 AT1G26580 253 / 1e-77 unknown protein Potri.008G094400 [exp] 104 / 3e-23 AT1G26580 280 / 3e-88 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014762 [exp] 276 / 4e-84 AT2G46040 242 / 4e-72 ARID/BRIGHT DNA-binding domain;ELM2 domain protein (.1) Lus10036373 [exp] 273 / 4e-83 AT4G11400 249 / 8e-75 ARID/BRIGHT DNA-binding domain;ELM2 domain protein (.1) Lus10024636 [exp] 268 / 8e-83 AT4G11400 187 / 5e-53 ARID/BRIGHT DNA-binding domain;ELM2 domain protein (.1) Lus10032272 [exp] 229 / 7e-70 AT4G11400 187 / 6e-55 ARID/BRIGHT DNA-binding domain;ELM2 domain protein (.1) Lus10032271 [exp] 142 / 3e-37 AT4G11400 77 / 1e-15 ARID/BRIGHT DNA-binding domain;ELM2 domain protein (.1) Lus10026655 [exp] 119 / 3e-28 AT1G26580 237 / 3e-72 unknown protein Lus10004658 [exp] 110 / 2e-25 AT1G26580 243 / 1e-74 unknown protein Lus10000680 [exp] 107 / 2e-24 AT1G13880 200 / 3e-59 ELM2 domain-containing protein (.1) Lus10021636 [exp] 106 / 2e-24 AT2G03470 188 / 5e-55 ELM2 domain-containing protein (.1.2) Lus10036888 [exp] 103 / 4e-23 AT1G26580 253 / 1e-77 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF01388 [poplar] [flax] ARID ARID/BRIGHT DNA binding domain
Representative CDS sequence Show only first row Show all	>Potri.003G129800.1 pacid=42787151 polypeptide=Potri.003G129800.1.p locus=Potri.003G129800 ID=Potri.003G129800.1.v4.1 annot-version=v4.1 ATGGCAGGATGGTTAATTTTAACAAATGGGTCTTCTTTAGATTGTCCTGATGATATTATTTATAGATACAAGGGTGGTGGTGGTTGTCCAGATATTAATC ATCCTATGAAGGATGAGATTAAGGAGTGTATTGTTGTTGATGATTCCGATGAGGATGATTGTGATTGTGAGGATAAAGTAGTATGCTTGTTTGATGAAGT GGTTTCGATTTTTTTGAATGAGGCTGCAGATGGAGGGTGTATTAGGCCTATTCCAGCATTGCTCGGTGATGGGCAATCGTTAGATTTGTTCAAACTCTTT TGGGTTGTGAGAAAGAGAGGTGGGTTTGATTTGGTAAATGGTTTTTGGAGCTTTGTGGCTAAAGAATTAGGGCTGGATCTTCGATTTTCGCCTTCAGTTA AATTGATTTATATTAAGTATTTGTATGAGTTGGAAAAATGTATGAAGATTTGTAGCGATGAGAAGTTAAGAAAGGAGATGCATCAATGTGATGGGAATTT GAGTTTTTCGTTGTTGGAGCTAGAGATGCAGTTTAGAAGTTTGTTATTGCTTAGATGTGATAGAAAGCAGGGAGATGGTAAATTTGCTTCACTAGGATAT AAGGTAAATGGCAGGTACATTGAAACAGACACTGGGAAGAGAAAAATAGGTTTGTTAGGCACCAAAGATGTACATCGAATACACAATGATGTTGGAGATA GGAATGGTGATGATGATGAAAAGTTTCATGGTGAAAAGGAGAATTACTGTGACGATAGTGATGATGATGTTGTGATCTTGGATCCAAGTATTGCTAAGAA AGAATTCAATTCCCGCAAGAGAAAACGAGAATCTCTAACAAGAATGCTTAACTGGGTAATCCAAATTGCAAAATGTCCTGATGATCCTTCTATTCGAGTA ATTCACAGAGGTGATGAGTTGTGGTCCCAAGCAATAAGGGCACGAGAAGCTCTCTTGCAAAGAAGGCATGTCAATCCTAACATCGAACAATCGCTCGTGC AGGTATGCAATATGAACTTACAGAACAATCAAAAGATGCATCCATCCATGTTTGAGGATGTTAGTTTTCTAAGTGAGCAGTCTGCCGAGAGGTCAAGATG CAGCAAGCGGCATCCTGCTATAGTGAAACCTCATTTATGCTATTGTTGTAATTCATGTTCAGCCCATCAAAGTAAATCAGCAAGTCTTCTCAAGTGTGAG AACGCCTGTAAGGAGCAAGAACACGACCTTAAGCAAGAACTTGTCATTGATGATTTATCATCCAAACACACAACACTCAGTGGATCTGGGGATAAGCATG TCCGTAGGCACGTGGCTGTGGGTCCTCTCTTCCAAGCTGAAGTCCCTGAGTGGATTGGCGTGGTTTCTGAGAGTGCCTCTAAATGGCTGGGCACTCGACT ATGGCCTTTGGAATGTGAAAACAATAATGCTCCAGTTGCAATGGATCCAATCGGAAAGGGAGGGATCAGTTTATGTGGCTGTCAGCTTCCAGGTTCAGTT GGATGTGTTAGATTTCATATTGCTGAAAAAAGAATGAAATTGAAGCTCGAACTGGGTCCTTTGTTCTATCATTGGCGGTTTGATCACATGGGTGAAGAAG TTTCACTTAGATGGACCACTGAAGAAGAAAAGAGATTCAAGGATATGGTCAGGTTTAACCCTCAATCTGCAGGCAAGTGCTTCTGGGACAACAAACGTAA GTATTTTCCTAGAAAGACCAGGGAAGAATTGATAAGCTATTACTTCAATGCATATCTTGTTCAGCGCAGAAGTTATCAGAACCGTGTAACTCCAAAATAT ATTGATAGTGATGATGATGAAACAAAGTTTGGATCTCTGAGTGATGCTTATGGTCATGAAGCACTCACGGTTCCTGGTGCCAACATGTTGATCTGTTCTG AGAATAAACAATGCACCGATTTCACATAG
AA sequence Show only first row Show all	>Potri.003G129800.1 pacid=42787151 polypeptide=Potri.003G129800.1.p locus=Potri.003G129800 ID=Potri.003G129800.1.v4.1 annot-version=v4.1 MAGWLILTNGSSLDCPDDIIYRYKGGGGCPDINHPMKDEIKECIVVDDSDEDDCDCEDKVVCLFDEVVSIFLNEAADGGCIRPIPALLGDGQSLDLFKLF WVVRKRGGFDLVNGFWSFVAKELGLDLRFSPSVKLIYIKYLYELEKCMKICSDEKLRKEMHQCDGNLSFSLLELEMQFRSLLLLRCDRKQGDGKFASLGY KVNGRYIETDTGKRKIGLLGTKDVHRIHNDVGDRNGDDDEKFHGEKENYCDDSDDDVVILDPSIAKKEFNSRKRKRESLTRMLNWVIQIAKCPDDPSIRV IHRGDELWSQAIRAREALLQRRHVNPNIEQSLVQVCNMNLQNNQKMHPSMFEDVSFLSEQSAERSRCSKRHPAIVKPHLCYCCNSCSAHQSKSASLLKCE NACKEQEHDLKQELVIDDLSSKHTTLSGSGDKHVRRHVAVGPLFQAEVPEWIGVVSESASKWLGTRLWPLECENNNAPVAMDPIGKGGISLCGCQLPGSV GCVRFHIAEKRMKLKLELGPLFYHWRFDHMGEEVSLRWTTEEEKRFKDMVRFNPQSAGKCFWDNKRKYFPRKTREELISYYFNAYLVQRRSYQNRVTPKY IDSDDDETKFGSLSDAYGHEALTVPGANMLICSENKQCTDFT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G11400	ARID		ARID/BRIGHT DNA-binding domain...		Potri.003G129800 [exp]	0	1
AT1G70590			F-box family protein (.1)		Potri.010G045300 [exp]	4.89	0.8418
AT5G13950			unknown protein		Potri.014G144100 [exp]	6.00	0.8651
AT2G27710			60S acidic ribosomal protein f...		Potri.010G236400 [exp]	7.87	0.8210
AT1G54570			Esterase/lipase/thioesterase f...		Potri.005G046600 [exp]	11.78	0.8032
AT4G25450		ABCB28, ATNAP8	ARABIDOPSIS THALIANA NON-INTRI...		Potri.015G136700 [exp]	12.72	0.8841	Pt-NAP8.1
AT4G13040	AP2_ERF		Integrase-type DNA-binding sup...		Potri.002G246100 [exp]	13.56	0.8297
AT4G30080	ARF	ARF16	auxin response factor 16 (.1)		Potri.006G127500 [exp]	14.14	0.8279
AT1G56560		A/N-InvA	alkaline/neutral invertase A, ...		Potri.005G010800 [exp]	15.29	0.8341
AT5G36930			Disease resistance protein (TI...		Potri.008G220200 [exp]	17.14	0.8603
AT1G11050			Protein kinase superfamily pro...		Potri.017G133000 [exp]	20.04	0.8661

Compare expression of checked genes

Potri.003G129800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.