Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G23460 1471 / 0 Adaptin family protein (.1) AT4G11380 1454 / 0 Adaptin family protein (.1.2) AT5G11490 325 / 1e-97 adaptin family protein (.1.2) AT3G55480 129 / 2e-30 AP-3beta, PAT2 beta-subunit of adaptor protein complex 3, protein affected trafficking 2 (.1.2) AT4G31480 57 / 7e-08 Coatomer, beta subunit (.1.2) AT4G31490 57 / 8e-08 Coatomer, beta subunit (.1) AT1G60070 51 / 3e-06 Adaptor protein complex AP-1, gamma subunit (.1.2) AT5G22770 43 / 0.001 ALPHA-ADR alpha-adaptin (.1.2.3) AT5G22780 43 / 0.001 Adaptor protein complex AP-2, alpha subunit (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G101400 [exp] 1603 / 0 AT4G23460 1486 / 0.0 Adaptin family protein (.1) Potri.006G243100 [exp] 330 / 1e-99 AT5G11490 1355 / 0.0 adaptin family protein (.1.2) Potri.010G202800 [exp] 126 / 2e-29 AT3G55480 1246 / 0.0 beta-subunit of adaptor protein complex 3, protein affected trafficking 2 (.1.2) Potri.018G007400 [exp] 76 / 1e-13 AT4G31480 1672 / 0.0 Coatomer, beta subunit (.1.2) Potri.006G273300 [exp] 72 / 2e-12 AT4G31480 1657 / 0.0 Coatomer, beta subunit (.1.2) Potri.009G150300 [exp] 52 / 3e-06 AT5G22780 1640 / 0.0 Adaptor protein complex AP-2, alpha subunit (.1) Potri.004G189700 [exp] 47 / 7e-05 AT5G22770 1659 / 0.0 alpha-adaptin (.1.2.3) Potri.016G104700 [exp] 46 / 0.0002 AT1G60070 1329 / 0.0 Adaptor protein complex AP-1, gamma subunit (.1.2) Potri.006G092800 [exp] 45 / 0.0003 AT1G60070 1356 / 0.0 Adaptor protein complex AP-1, gamma subunit (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017508 [exp] 1525 / 0 AT4G23460 1565 / 0.0 Adaptin family protein (.1) Lus10028775 [exp] 1515 / 0 AT4G23460 1556 / 0.0 Adaptin family protein (.1) Lus10024654 [exp] 1508 / 0 AT4G23460 1560 / 0.0 Adaptin family protein (.1) Lus10032286 [exp] 1507 / 0 AT4G23460 1567 / 0.0 Adaptin family protein (.1) Lus10022125 [exp] 343 / 1e-100 AT5G11490 1337 / 0.0 adaptin family protein (.1.2) Lus10011675 [exp] 219 / 2e-59 AT5G11490 897 / 0.0 adaptin family protein (.1.2) Lus10023408 [exp] 130 / 2e-30 AT3G55480 1320 / 0.0 beta-subunit of adaptor protein complex 3, protein affected trafficking 2 (.1.2) Lus10040289 [exp] 129 / 4e-30 AT3G55480 1331 / 0.0 beta-subunit of adaptor protein complex 3, protein affected trafficking 2 (.1.2) Lus10015105 [exp] 73 / 1e-12 AT4G31480 1650 / 0.0 Coatomer, beta subunit (.1.2) Lus10031570 [exp] 72 / 1e-12 AT4G31480 1659 / 0.0 Coatomer, beta subunit (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01602 [poplar] [flax] Adaptin_N Adaptin N terminal region CL0159 [poplar] [flax] E-set PF02883 [poplar] [flax] Alpha_adaptinC2 Adaptin C-terminal domain CL0545 [poplar] [flax] APCOP-app_sub PF09066 [poplar] [flax] B2-adapt-app_C Beta2-adaptin appendage, C-terminal sub-domain
Representative CDS sequence Show only first row Show all	>Potri.003G130400.1 pacid=42785743 polypeptide=Potri.003G130400.1.p locus=Potri.003G130400 ID=Potri.003G130400.1.v4.1 annot-version=v4.1 ATGAGCGGTCACGATTCAAAGTATTTCTCGACGACCAAGAAGGGTGAAATCCCTGAGCTCAAAGAAGAGCTCAATTCTCAGTACAAGGATAAGAGAAAAG ATGCTGTTAAGAAGGTGATTGCCGCAATGACTGTTGGAAAAGATGTATCATCATTGTTCACAGATGTAGTGAACTGCATGCAGACAGAAAATTTGGAGCT CAAGAAGCTAGTTTATTTATATCTTATAAATTATGCTAAAAGCCAACCAGATTTGGCGATACTTGCAGTAAATACATTTGTTAAGGATTCGCAAGATCCA AACCCCTTAATTCGAGCTCTGGCTGTACGGACAATGGGGTGCATTCGTGTTGACAAAATAACAGAGTATCTATGTGATCCACTTCAGAGGTGTCTTAAGG ATGATGATCCTTATGTTCGCAAGACAGCAGCCATTTGTGTAGCCAAACTTTATGACATAAATGCTGAGCTTGTCGAGGATAGGGGCTTTTTGGAATCTCT CAAGGATTTGATTTCTGACAACAATCCCATGGTTGTAGCTAATGCTGTGGCAGCGCTTGCAGAAATTCAAGACAATAGTGTCAGGCCCATCTTTGAGATT ACTAGTCACACGCTCTCAAAGCTGCTTACTGCCCTTAATGAGTGCACAGAGTGGGGCCAAGTTTTTATATTGGATGCACTATCTAGATACAAAGCAGCTG ATGCTCGTGAGGCTGAAAATATAGTGGAACGAGTTACTCCACGGCTTCAACATGCTAATTGTGCAGTTGTACTTTCAGCTGTTAAGATGATTCTCCAACA AATGGAAATTATAACCAGCACCGATGTGGTTCGAAATCTTTGCAAGAAGATGGCTCCTCCTCTCGTGACATTACTCTCTGCAGAACCGGAGATACAGTAT GTTGCTTTGCGTAACATCAACCTAATTGTACAAAGACGTCCTACGATCCTTGCCCATGAGATTAAGGTTTTTTTCTGCAAGTACAATGACCCAATTTATG TGAAGATGGAAAAGCTAGAAATCATGATAAAGCTTGCTTCAGACCGCAATATAGACCAGGTTCTATTGGAGTTCAAAGAGTATGCCACAGAAGTAGATGT AGATTTTGTTAGAAAGGCTGTTCGTGCCATTGGCCGTTGTGCAATTAAGTTAGAGAGAGCTGCTGAGCGCTGTATCAGTGTTCTCCTAGAGCTGATCAAG ATTAAAGTAAATTATGTGGTTCAAGAGGCTATCATAGTTATCAAAGACATCTTTAGAAGATACCCTAACACTTATGAGTCAATCATTGCAACCCTCTGTG AGAGCTTGGACACTCTTGATGAACCTGAAGCTAAGGCTTCAATGATCTGGATTATTGGTGAATATGCTGAAAGAATTGACAATGCTGATGAGCTCCTGGA GAGCTTCTTGGAGAGTTTTCCTGAAGAGCCTGCGCAAGTCCAGTTGCAATTACTGACTGCAACTGTCAAACTCTTCCTTAAGAAGCCAACTGAAGGACCC CAACAGATGATTCAGGTGGTTTTGAATAATGCCACCATGGAAACTGACAATCCTGATCTAAGGGATCGTGCATACATATATTGGCGTCTGCTATCAACTG ATCCTGAGGCAGCTAAAGATGTTGTGTTAGCTGAGAAGCCTGTGATCAGTGACGATTCAAACCAGCTCGATCCATCTCTTCTTGATGAGCTTCTTGCCAA CATTGCGACTTTGTCGTCTGTGTATCACAAGCCCCCAGAAGCATTTGTAACCCGTGTAAAGACTGCAGCACAGAAAACTGAAGATGATGAATATGCCGAA GGTAGTGAAGCAGGGTATTCTGAATCATCTGCCCATACTGCTGATGGTGCTGCATCGCCACCTACTAGTGCAAGTAATGTTCCATATGCTGGAGCAAGGC AAGCAGCACCTGCACCATCTACAAGTCCACCTGCTGCTCCTCTGCCAGATTTGATGGGTGATCTGTTGGACATGGATAATAGTGCTATGGTCCCTGTTGA CCAGCCTTCTACTCCTGCTAGCCCTCCTTTGCCTGTTTTACTGCCAGCAGCCACTGGTCAGGGTTTACAAATCAGTGCACAGCTTATTAGCCGAGATGGT CAGATCTTTTACAGTTTATTGTTTGAGAACAACTCACAGATTCCCCTGGATGGATTCATGATCCAGTTTAACAAGAACTCGTTCGGTCTTGCAGCTGCTG GACCTTTGCAGGTTCCCCAATTGCAACCTGGGACATCAGCAGCAACTCTGCTGCCTGTGGCTTTGTTTCAGAATATGTCTGCTGGTCCTCCAAGCTCTCT TTTGCAAGTTGCCGTGAAAAATAATCAACAACCTGTATGGTATTTCAATGACAAAATCTCATTGCATGTATTCTTCACAGAAGATGGGAGGATGGAACGT GGAAGCTTTCTTGAGACATGGAGGTCCCTTCCTGATTCAAATGAGGTCTCAAAGGACTTCCCAGGCATTACCGTGAATGGTGTAGAAGCTACTTTAGACC GGCTTGCTGCATCAAACATGTTTTTTATTGCAAAGCGAAAGCATGCAAACCAGGATGTATTCTACTTCTCAGCTAAAATGCCTAGAGGAATTCCTTTCTT GACCGAACTCACAACAGTTGTTGGAATCCCCGGGATCAAGTGTGCCATCAAGACTCCAAACCCTGAGATGGCAAGTCTTTTCTTTGAAGCCATTGAGACC CTCCTTAAGGGTTGA
AA sequence Show only first row Show all	>Potri.003G130400.1 pacid=42785743 polypeptide=Potri.003G130400.1.p locus=Potri.003G130400 ID=Potri.003G130400.1.v4.1 annot-version=v4.1 MSGHDSKYFSTTKKGEIPELKEELNSQYKDKRKDAVKKVIAAMTVGKDVSSLFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDP NPLIRALAVRTMGCIRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIQDNSVRPIFEI TSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAENIVERVTPRLQHANCAVVLSAVKMILQQMEIITSTDVVRNLCKKMAPPLVTLLSAEPEIQY VALRNINLIVQRRPTILAHEIKVFFCKYNDPIYVKMEKLEIMIKLASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIK IKVNYVVQEAIIVIKDIFRRYPNTYESIIATLCESLDTLDEPEAKASMIWIIGEYAERIDNADELLESFLESFPEEPAQVQLQLLTATVKLFLKKPTEGP QQMIQVVLNNATMETDNPDLRDRAYIYWRLLSTDPEAAKDVVLAEKPVISDDSNQLDPSLLDELLANIATLSSVYHKPPEAFVTRVKTAAQKTEDDEYAE GSEAGYSESSAHTADGAASPPTSASNVPYAGARQAAPAPSTSPPAAPLPDLMGDLLDMDNSAMVPVDQPSTPASPPLPVLLPAATGQGLQISAQLISRDG QIFYSLLFENNSQIPLDGFMIQFNKNSFGLAAAGPLQVPQLQPGTSAATLLPVALFQNMSAGPPSSLLQVAVKNNQQPVWYFNDKISLHVFFTEDGRMER GSFLETWRSLPDSNEVSKDFPGITVNGVEATLDRLAASNMFFIAKRKHANQDVFYFSAKMPRGIPFLTELTTVVGIPGIKCAIKTPNPEMASLFFEAIET LLKG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G23460			Adaptin family protein (.1)		Potri.003G130400 [exp]	0	1
AT5G05010			clathrin adaptor complexes med...		Potri.012G125500 [exp]	1.73	0.9716
AT4G13700		ATPAP23, PAP23	purple acid phosphatase 23 (.1...		Potri.003G176000 [exp]	2.64	0.9580
AT1G48880		TBL7	TRICHOME BIREFRINGENCE-LIKE 7 ...		Potri.005G060800 [exp]	2.82	0.9673
AT5G11980			conserved oligomeric Golgi com...		Potri.006G225500 [exp]	4.89	0.9592
AT5G05010			clathrin adaptor complexes med...		Potri.015G125400 [exp]	4.89	0.9601
AT4G31480			Coatomer, beta subunit (.1.2)		Potri.018G007400 [exp]	5.47	0.9591
AT1G10950		AtTMN1	transmembrane nine 1 (.1)		Potri.004G218300 [exp]	5.47	0.9546
AT4G30160		ATVLN4, VLN4	villin 4 (.1.2)		Potri.018G089700 [exp]	6.70	0.9517	Pt-VLN4.2
AT4G14960		TUA6	Tubulin/FtsZ family protein (....		Potri.001G289500 [exp]	7.34	0.9511	TUA2.1
AT4G27080		ATPDI7, ATPDIL5...	ARABIDOPSIS THALIANA PROTEIN D...		Potri.011G135500 [exp]	8.12	0.9544

Compare expression of checked genes

Potri.003G130400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.