Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G63830 340 / 2e-119 PLAC8 family protein (.1.2.3) AT5G41390 330 / 5e-115 PLAC8 family protein (.1.2) AT4G23470 310 / 1e-107 PLAC8 family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G101100 [exp] 383 / 4e-136 AT1G63830 353 / 2e-124 PLAC8 family protein (.1.2.3) Potri.014G087600 [exp] 310 / 2e-107 AT5G41390 327 / 8e-114 PLAC8 family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017509 [exp] 362 / 1e-127 AT1G63830 379 / 1e-134 PLAC8 family protein (.1.2.3) Lus10028774 [exp] 324 / 4e-112 AT1G63830 350 / 1e-122 PLAC8 family protein (.1.2.3) Lus10018826 [exp] 288 / 2e-97 AT4G23470 328 / 2e-113 PLAC8 family protein (.1.2.3) Lus10014759 [exp] 295 / 7e-97 AT3G09740 308 / 4e-102 syntaxin of plants 71 (.1) Lus10036377 [exp] 137 / 8e-37 AT3G09740 347 / 8e-117 syntaxin of plants 71 (.1) Lus10000149 [exp] 96 / 1e-24 AT5G41390 103 / 3e-28 PLAC8 family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04749 [poplar] [flax] PLAC8 PLAC8 family
Representative CDS sequence Show only first row Show all	>Potri.003G130700.1 pacid=42787403 polypeptide=Potri.003G130700.1.p locus=Potri.003G130700 ID=Potri.003G130700.1.v4.1 annot-version=v4.1 ATGGCTTCTCAGGAGCACTTGGACAAGATGCAGTTACGACAGAACTATAGAAATCTCTGGCACACTGATTTAATGGGCACCATTAAAGCTGATGCCCCAT ATTGCTGCTTGGCTTTTTGGTGTGGGCCATGTGTATCATACTTGCTCCGCAAACGAGCACTTTACAATGACATGTCAAGGTACGTTTGTTGTGCTGGTTA CATGCCTTGTAGTGGCAGGTGTGGTGAAAGTCGGTGCCCTGAACTTTGTCTTGCCACAGAGGTATTCCTTTGCTTTGGAAATTCAGTGGCCTCTACTCGC TTTATGTTGCAAGATGAATTCAACATTCAAACTACAAGATGTGATAATTGCATTATTGGTTTTATGTTCTGCCTCCAACAAATTGCATGCATATTTTCTA TAGTTGCAATGATTGTTGGAAGTGAAGAAATTCAAGAGGCTTCCCAGTTGCTATCTTGTTTGGCTGATATGGTGTACTGCACGGTTTGTGCTTGTATGCA GACACAACACAAGATTGAAATGGACAAAAGAGACGGCATGTTTGGGCCACAACCGGTGATGGCAGTGCCCCCTGTTCAGCAGATGTCACGCATTGATCAG CCAATTCCTCCCTCAGTTGGATATGCACCTCAAACATACGGACAGCCCTATGGACAACCCTATGGTTATCCACCGCAGCCCCACCAAGGGTACCCCGTAG CAGGTTATCCTCCATCTAACTACCCACCCCCTGCGTATCCACCATCTGGCTATCCAAAGTGA
AA sequence Show only first row Show all	>Potri.003G130700.1 pacid=42787403 polypeptide=Potri.003G130700.1.p locus=Potri.003G130700 ID=Potri.003G130700.1.v4.1 annot-version=v4.1 MASQEHLDKMQLRQNYRNLWHTDLMGTIKADAPYCCLAFWCGPCVSYLLRKRALYNDMSRYVCCAGYMPCSGRCGESRCPELCLATEVFLCFGNSVASTR FMLQDEFNIQTTRCDNCIIGFMFCLQQIACIFSIVAMIVGSEEIQEASQLLSCLADMVYCTVCACMQTQHKIEMDKRDGMFGPQPVMAVPPVQQMSRIDQ PIPPSVGYAPQTYGQPYGQPYGYPPQPHQGYPVAGYPPSNYPPPAYPPSGYPK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G63830			PLAC8 family protein (.1.2.3)		Potri.003G130700 [exp]	0	1
AT5G04840	bZIP		bZIP protein (.1)		Potri.008G018400 [exp]	2.82	0.9164
AT3G05270			Plant protein of unknown funct...		Potri.005G070400 [exp]	3.46	0.9049
AT2G33385		ARPC2B	actin-related protein C2B (.1....		Potri.010G067100 [exp]	3.46	0.9098
AT3G07510			unknown protein		Potri.002G239500 [exp]	4.47	0.8916
AT4G28640	AUX_IAA	IAA11	indole-3-acetic acid inducible...		Potri.002G256600 [exp]	5.29	0.9071	Pt-IAA11.1
AT2G33385		ARPC2B	actin-related protein C2B (.1....		Potri.008G170800 [exp]	7.93	0.8795
AT3G05270			Plant protein of unknown funct...		Potri.007G098500 [exp]	10.48	0.9105
AT4G27880			Protein with RING/U-box and TR...		Potri.015G013000 [exp]	10.77	0.8244
AT3G63120		CYCP1;1	cyclin p1;1 (.1)		Potri.002G052800 [exp]	12.32	0.8953
AT5G35200			ENTH/ANTH/VHS superfamily prot...		Potri.018G125284 [exp]	14.96	0.9032

Compare expression of checked genes

Potri.003G130700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.