Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G63850 653 / 0 BTB/POZ domain-containing protein (.1) AT5G60050 376 / 1e-123 BTB/POZ domain-containing protein (.1) AT3G50780 340 / 2e-109 unknown protein AT2G13690 238 / 2e-70 PRLI-interacting factor, putative (.1) AT3G05675 90 / 6e-19 BTB/POZ domain-containing protein (.1.2) AT4G10800 48 / 1e-05 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G100900 [exp] 958 / 0 AT1G63850 696 / 0.0 BTB/POZ domain-containing protein (.1) Potri.005G129700 [exp] 370 / 4e-121 AT3G50780 623 / 0.0 unknown protein Potri.001G233900 [exp] 368 / 2e-120 AT5G60050 533 / 0.0 BTB/POZ domain-containing protein (.1) Potri.007G032800 [exp] 363 / 3e-118 AT3G50780 654 / 0.0 unknown protein Potri.007G109300 [exp] 254 / 1e-76 AT2G13690 518 / 4e-180 PRLI-interacting factor, putative (.1) Potri.005G058700 [exp] 251 / 3e-75 AT2G13690 526 / 0.0 PRLI-interacting factor, putative (.1) Potri.004G154600 [exp] 95 / 2e-20 AT1G63850 96 / 6e-21 BTB/POZ domain-containing protein (.1) Potri.001G086100 [exp] 71 / 8e-13 AT3G05675 348 / 9e-117 BTB/POZ domain-containing protein (.1.2) Potri.006G202900 [exp] 62 / 9e-10 AT3G05675 532 / 0.0 BTB/POZ domain-containing protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017511 [exp] 744 / 0 AT1G63850 706 / 0.0 BTB/POZ domain-containing protein (.1) Lus10028772 [exp] 714 / 0 AT1G63850 707 / 0.0 BTB/POZ domain-containing protein (.1) Lus10024658 [exp] 674 / 0 AT1G63850 672 / 0.0 BTB/POZ domain-containing protein (.1) Lus10038475 [exp] 353 / 1e-114 AT5G60050 518 / 0.0 BTB/POZ domain-containing protein (.1) Lus10022484 [exp] 348 / 6e-113 AT3G50780 602 / 0.0 unknown protein Lus10023336 [exp] 342 / 3e-110 AT5G60050 532 / 0.0 BTB/POZ domain-containing protein (.1) Lus10016789 [exp] 267 / 7e-84 AT3G50780 408 / 1e-140 unknown protein Lus10033484 [exp] 219 / 4e-63 AT2G13690 478 / 7e-164 PRLI-interacting factor, putative (.1) Lus10020892 [exp] 214 / 3e-61 AT2G13690 479 / 3e-164 PRLI-interacting factor, putative (.1) Lus10040458 [exp] 92 / 2e-19 AT1G63850 84 / 5e-17 BTB/POZ domain-containing protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.003G131000.1 pacid=42785396 polypeptide=Potri.003G131000.1.p locus=Potri.003G131000 ID=Potri.003G131000.1.v4.1 annot-version=v4.1 ATGGCCACCACCACCACCACTACTTCAACAACCAAAGCTCAACTTATTAAAGTCCAAGCTCAGCCCATCAAGCCCAAACGCCGTAGATTCCGTGAAACCA CCATTTCCTCCTCTGCCTCCACCACCACAACAAATAACTCTGAATCCGCCTGCTACTTGACCCAAACCCGAAAACATGACCCACCAACAATAGCCTCTCC AGATAACTTTTGGTTCCGTCCAGCTTCTAAACCTCTCCCAACTCCGCCTCCTCCATCACCGCCTCCACAGAAAACCCGTTTCCCCATTAACCATAGTCCA CAACCCGACCTGGTTTCAACCTCACCTTCAGAATTCAAGATCCTGTTGTCTCCAGGAAGTCAGTCACCAGTGATGGAATTTACAACAACAACACTACTAG CAAATGGCCACCACCACATTGCTTCTCCAATTGAACACTCATCTTTCCCTTCTAGTTTTACCAAGTTTAACTCTGCACTCACTGCCGGTTTGTTGAACCC TATGTCACCTCCACCACCTGATCATAAACCCCGGTCAAGCCCGACCCTTTTTGAAATGATGGCTAGTGAACCCGAGATGCAACCCAGAACCATAACCCAG ATACCCATTATCGGTAATAATGGAAATATCAATGTCAGAAACACACAGAGCAGTCAAATGTCGGTTCAAGATAGACAAGCTTTAATCTTGCAACGTATAA CTAACATTCTGGGAAACAGGAGTCCTGGTAATCAGTTTAATGATTCGAGTTCTAGTGATGTGAACTTGACATTGAGTTCTAAAGATGGTATTAGTGTTTC AATGAATGTGCATAGGCAGATCTTGGTGGGTCATAGTCGGTTTTTTGCAGTGAAGTTGTCGGATAAGTGGGCTAATAAGCAACAAAGGATGTCTGCTCCT TATGTTGTGGAGATTGCTGATTGTGATGATGTTGAGGTTTATATTGAGACTCTGAGGTTGATGTATTGTAAGGATCTGAGAAGGAAGCTTATGAAAGAGG ATGTGTCTAGAGTTCTTGGTATTTTAAAGGTTTCTGCAGCAATTGGGTTTGATGCTGGGGTTTTATCTTGCTTGGAGTACTTGGAGGCTGCTCCATGGGC TGAGGATGAAGAAGAGAAGGTGGCTTCACTTCTATCGGAGCTTCGCCTTGAAGGGGTTGGAGTGAGTGAAGTTTTGAAGAGGGTTTCTGTTGAAGTCACC AATGGAACTCAAGATGGTGGCGACAATGAAGAAGTGCTTCTCAAGCTTTTACATGTAGTTCTGGAAGGGAAGGATGAGAAAGCGAGGCGTGAGATGAAAG GATTATTGTCGAAGATGCTTCGTGAGAATTCTTCTCAGAATGACCTTCGGAAAGAGTCATTGTACTTGGCATGTAATGGGTGTTTGCAATTGCTTCAAGA CCATTTTCTCCGGGCAGCCTCAGGGGTTTTGAATGATGTTGGACAAATTGCGCGGCAAGCAGATAACTTGCATTGGATTTTGGATATTTTGATTGATAGA CAGATCGCTGAAGATTTTTTGAAAACATGGGCCTCTCAATCTGAATTGTCTGCTGTACATTCTAAAATTCCAGCTATTCACAGGTATGAGGTTAGTAGAG TTACAGCTAGGTTGTTTGTTGGGATCGGAAAGGGGCAGCTGTTGGCTTCCAAAGAAGCAAGGTCTTTGCTTCTACAGACGTGGTTAGTGCCATTTTATGA TGATTTTGGTTGGATGAGGAGGGCAACAAAAGGCCTTGATCGACATTTGATTGAAGATGGTCTTAGTAACACAATTTTAACTCTGCCACTAGCTTGGCAG CAGGATATTTTGCTTGCTTGGTTTGATCGATTTCTGAATTCTGGTGAAGATTGTCCTAATATACAAAGGGGATTTGAAGTTTGGTGGAGGAGGGCATTTT GGAGACGTCGTGGTGAGCAGGAAAGGACACGGCCAATAAGAATTACAACTGCAACCATTGAGAACTCATAA
AA sequence Show only first row Show all	>Potri.003G131000.1 pacid=42785396 polypeptide=Potri.003G131000.1.p locus=Potri.003G131000 ID=Potri.003G131000.1.v4.1 annot-version=v4.1 MATTTTTTSTTKAQLIKVQAQPIKPKRRRFRETTISSSASTTTTNNSESACYLTQTRKHDPPTIASPDNFWFRPASKPLPTPPPPSPPPQKTRFPINHSP QPDLVSTSPSEFKILLSPGSQSPVMEFTTTTLLANGHHHIASPIEHSSFPSSFTKFNSALTAGLLNPMSPPPPDHKPRSSPTLFEMMASEPEMQPRTITQ IPIIGNNGNINVRNTQSSQMSVQDRQALILQRITNILGNRSPGNQFNDSSSSDVNLTLSSKDGISVSMNVHRQILVGHSRFFAVKLSDKWANKQQRMSAP YVVEIADCDDVEVYIETLRLMYCKDLRRKLMKEDVSRVLGILKVSAAIGFDAGVLSCLEYLEAAPWAEDEEEKVASLLSELRLEGVGVSEVLKRVSVEVT NGTQDGGDNEEVLLKLLHVVLEGKDEKARREMKGLLSKMLRENSSQNDLRKESLYLACNGCLQLLQDHFLRAASGVLNDVGQIARQADNLHWILDILIDR QIAEDFLKTWASQSELSAVHSKIPAIHRYEVSRVTARLFVGIGKGQLLASKEARSLLLQTWLVPFYDDFGWMRRATKGLDRHLIEDGLSNTILTLPLAWQ QDILLAWFDRFLNSGEDCPNIQRGFEVWWRRAFWRRRGEQERTRPIRITTATIENS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G63850			BTB/POZ domain-containing prot...		Potri.003G131000 [exp]	0	1
AT5G59350			unknown protein		Potri.009G029300 [exp]	1.73	0.7746
AT2G38040		CAC3	acetyl Co-enzyme a carboxylase...		Potri.006G095800 [exp]	6.63	0.6843	CAC3.1
AT4G22190			unknown protein		Potri.006G282000 [exp]	18.11	0.6674
AT5G01620		TBL35	TRICHOME BIREFRINGENCE-LIKE 35...		Potri.016G125600 [exp]	35.49	0.6316
AT4G24710			P-loop containing nucleoside t...		Potri.012G086400 [exp]	35.84	0.6652
AT5G20950			Glycosyl hydrolase family prot...		Potri.013G055600 [exp]	37.14	0.6159
AT4G28600		NPGR2	no pollen germination related ...		Potri.008G169500 [exp]	37.70	0.5807	NPGR2.2
AT4G34980		SLP2	subtilisin-like serine proteas...		Potri.004G173900 [exp]	43.95	0.5855
AT5G60920		COB	COBRA-like extracellular glyco...		Potri.015G060000 [exp]	58.88	0.6277
AT3G07330		ATCSLC6, ATCSLC...	CELLULOSE-SYNTHASE LIKE C6, Ce...		Potri.002G248400 [exp]	76.68	0.6045	ATCSLC06.4

Compare expression of checked genes

Potri.003G131000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.