Plant FIBer expression Database

Potri.003G131200 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G05170 283 / 1e-94 Phosphoglycerate mutase family protein (.1)
AT1G08940 261 / 1e-86 Phosphoglycerate mutase family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G037900
[exp]
286 / 8e-96 AT3G05170 441 / 2e-157 Phosphoglycerate mutase family protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10032291
[exp]
384 / 2e-135 AT3G05170 241 / 2e-79 Phosphoglycerate mutase family protein (.1)
Lus10024659
[exp]
381 / 3e-134 AT3G05170 241 / 2e-79 Phosphoglycerate mutase family protein (.1)
Lus10015164
[exp]
289 / 6e-97 AT3G05170 421 / 2e-149 Phosphoglycerate mutase family protein (.1)
Lus10031518
[exp]
288 / 1e-96 AT3G05170 423 / 3e-150 Phosphoglycerate mutase family protein (.1)
Lus10029974
[exp]
254 / 2e-83 AT3G05170 410 / 4e-145 Phosphoglycerate mutase family protein (.1)
Lus10035350
[exp]
191 / 6e-59 AT3G05170 317 / 1e-108 Phosphoglycerate mutase family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0071 His_phosphatase PF00300 His_Phos_1 Histidine phosphatase superfamily (branch 1)
Representative CDS sequence
>Potri.003G131200.1 pacid=42785826 polypeptide=Potri.003G131200.1.p locus=Potri.003G131200 ID=Potri.003G131200.1.v4.1 annot-version=v4.1
ATGGCCATACATTCCCTCACAACCTCCCCAGCTTCATCACTGCTACTTCCGCCGCGAAAACTGATTAAATCAAGTTTCATCCAATGCTGTAAAACCCAAA
ATGAGAGCATTGAACTTTCTACAAATGGGAAGGCCAGTTTTCCCGAAAAGAGTCTACAAAAACAACCGTTAAATAATCTACCTCCCAGGCCTCGCCGGAT
AATACTGGTTCGGCATGGACAAAGCCAAGGAAATGTTGATGAGAGTGTCTATACAAGGATCGCTGATCCGAAGATCGCCCTCACTGAGAAAGGAAAGGCC
CAGGCTGAAGAATGTGGTAAGAGAATCAGGGAGATGATTGAGAAAGATGAGGCGGATGATTGGAAGGTTTACTTCTATGTGTCACCATATAAAAGGACTC
GTGAAACATTACAGAATTTGGCCAGAGCATTTGAGCGCTCAAGAATTGCCGGTATGAGAGAAGAGCCTCGTCTGCGCGAGCAAGATTTCGGCAATTTTCA
GGATAGAGAGAGGATGAGAGCTGAAAAGGCTATTCGAATGCTCTATGGTCGATTCTTTTTCCGATTTCCCAATGGAGAATCGGCAGCTGATGTTTATGAT
AGAGTCACAGGATTCAGAGAAACACTCAGAGCAGACATTGATATAGGACGCTTTCAGCCTCCCGGTGAACAAAGTCCAAACATGAACTTAGTGATAGTTT
CTCATGGTCTCACACTTCGTGTGTTTCTAATGAGGTGGTATAAATGGACTGTGGAGCAATATGAGAAACTCCATAACTTTGGGAATGGAGGAATGGTCGT
CATGGAGAGAGGCTTTGGTGGAAGGTACAGCTTATTGATGCATCACACTGAAGAAGAGCTAAAGGAGTTTGGATTGACAGATGAAATGCTTATGGATCAA
GAATGGCAAAAATTTGCAAGACCAGGTGAATTGAACTATGATTTTCCTATGATGAATTCATTCTTCACCCATTTTAAACATGACGACTGCCAATGA
AA sequence
>Potri.003G131200.1 pacid=42785826 polypeptide=Potri.003G131200.1.p locus=Potri.003G131200 ID=Potri.003G131200.1.v4.1 annot-version=v4.1
MAIHSLTTSPASSLLLPPRKLIKSSFIQCCKTQNESIELSTNGKASFPEKSLQKQPLNNLPPRPRRIILVRHGQSQGNVDESVYTRIADPKIALTEKGKA
QAEECGKRIREMIEKDEADDWKVYFYVSPYKRTRETLQNLARAFERSRIAGMREEPRLREQDFGNFQDRERMRAEKAIRMLYGRFFFRFPNGESAADVYD
RVTGFRETLRADIDIGRFQPPGEQSPNMNLVIVSHGLTLRVFLMRWYKWTVEQYEKLHNFGNGGMVVMERGFGGRYSLLMHHTEEELKEFGLTDEMLMDQ
EWQKFARPGELNYDFPMMNSFFTHFKHDDCQ

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G05170 Phosphoglycerate mutase family... Potri.003G131200
[exp]
0 1
AT4G32590 2Fe-2S ferredoxin-like superfa... Potri.006G247300
[exp]
1.73 0.9132
AT5G66450 Phosphatidic acid phosphatase ... Potri.007G021600
[exp]
5.65 0.8869
AT3G18280 Bifunctional inhibitor/lipid-t... Potri.004G096000
[exp]
9.48 0.8267
AT2G17695 unknown protein Potri.005G105500
[exp]
12.12 0.8588
AT4G01050 TROL thylakoid rhodanese-like (.1) Potri.002G169100
[exp]
15.42 0.8965
AT1G72030 Acyl-CoA N-acyltransferases (N... Potri.005G054600
[exp]
19.28 0.8958
AT1G65560 Zinc-binding dehydrogenase fam... Potri.010G177700
[exp]
21.00 0.8384
AT1G10310 NAD(P)-binding Rossmann-fold s... Potri.004G228533
[exp]
21.63 0.8323
AT5G16970 AT-AER alkenal reductase (.1) Potri.007G143600
[exp]
22.97 0.8508
AT3G63410 VTE3, APG1, IEP... VITAMIN E DEFECTIVE 3, INNER E... Potri.008G159400
[exp]
29.18 0.8938 Pt-APG1.1

Potri.003G131200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.