Plant FIBer expression Database

Potri.003G131500 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G41470 210 / 6e-67 Nuclear transport factor 2 (NTF2) family protein (.1)
AT1G71480 109 / 1e-28 Nuclear transport factor 2 (NTF2) family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G100500
[exp]
489 / 3e-177 AT5G41470 213 / 2e-68 Nuclear transport factor 2 (NTF2) family protein (.1)
Potri.019G074800
[exp]
107 / 8e-28 AT1G71480 249 / 2e-84 Nuclear transport factor 2 (NTF2) family protein (.1)
Potri.013G100600
[exp]
100 / 1e-25 AT1G71480 199 / 5e-65 Nuclear transport factor 2 (NTF2) family protein (.1)
Potri.002G070800
[exp]
86 / 1e-19 AT5G41470 85 / 2e-19 Nuclear transport factor 2 (NTF2) family protein (.1)
Potri.016G013200
[exp]
79 / 5e-17 AT4G22370 114 / 6e-32 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10024664
[exp]
247 / 2e-81 AT5G41470 196 / 2e-61 Nuclear transport factor 2 (NTF2) family protein (.1)
Lus10032294
[exp]
226 / 2e-73 AT5G41470 177 / 1e-54 Nuclear transport factor 2 (NTF2) family protein (.1)
Lus10041048
[exp]
105 / 3e-27 AT1G71480 238 / 7e-80 Nuclear transport factor 2 (NTF2) family protein (.1)
Lus10003793
[exp]
47 / 3e-06 AT4G22370 86 / 4e-22 unknown protein
Lus10006176
[exp]
0 / 1 AT4G10030 238 / 7e-73 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0051 NTF2 PF12680 SnoaL_2 SnoaL-like domain
Representative CDS sequence
>Potri.003G131500.2 pacid=42787052 polypeptide=Potri.003G131500.2.p locus=Potri.003G131500 ID=Potri.003G131500.2.v4.1 annot-version=v4.1
ATGGCTGCTGCTGTCAATTTCCCTGGCCAGCTCCCACGGCAGACCATCTCCCTCAAAGGAGTGGCTGGACTCACTCTCGCCTCCTCTCCCTTTAAAGGGT
CGAGTCAATTAATGCTGAGCAACGTGAAGATGGAACAAGAAGTAGCATGTTTAAGAAAACAGGTAAATAACAAATTGTTCAACAAAAGATGGGTCAACTT
GGTTGTGTCAGCGGCTGCTGATTTCGACTTGAAATTGGGTTCTTCTCCGTCCAATATGATCAAGCAATTCTATACATGCATCAATGACAAGAAGCTGAAG
GAACTAGATGGCTATATCTCGGAGGATTGTCACTTCGAAAACTGCTCCTTCCTTCAACCAATGCAAGGGAAAAGGGAGGTTATGCATTTCTTTCGACAAC
TTACAGCAGGCATGGGCGAGAATATGAAGTTCATCATTGAACATGTATGTGAAGATGATGAAATGACAGCAGGCGTGAATTGGCACTTAGAATGGAAAAC
GATCCAGATACCCTTCACCAGAGGATGCAGCTTCTATGAATGTTCTCACAAAGACGACAGACTTGTTATCAAGAAAGCTCTGGTTGTGATAGAATCACCC
ATCAAACCAGGAGGCATTGTTCTGACTCTGTTAAAGAATATGACTGCAATATTTGATGATTTCCCAAGAGCTGCAGAATGGTTGCTAAAGAGTCCTCATG
TCATAATGCAATTCTGTTCAAAAATTTACAGCAGGCTTTTGGCCCCTCTTGTCAACCCACTTCTTGCAGGCTACATCAGAGCCTGGAAACCCATTGCAAG
ATTATTTGCTTTTGCACTGAACATAGTATTCCATTTTCTAAATAAGTATTTTGGATAG
AA sequence
>Potri.003G131500.2 pacid=42787052 polypeptide=Potri.003G131500.2.p locus=Potri.003G131500 ID=Potri.003G131500.2.v4.1 annot-version=v4.1
MAAAVNFPGQLPRQTISLKGVAGLTLASSPFKGSSQLMLSNVKMEQEVACLRKQVNNKLFNKRWVNLVVSAAADFDLKLGSSPSNMIKQFYTCINDKKLK
ELDGYISEDCHFENCSFLQPMQGKREVMHFFRQLTAGMGENMKFIIEHVCEDDEMTAGVNWHLEWKTIQIPFTRGCSFYECSHKDDRLVIKKALVVIESP
IKPGGIVLTLLKNMTAIFDDFPRAAEWLLKSPHVIMQFCSKIYSRLLAPLVNPLLAGYIRAWKPIARLFAFALNIVFHFLNKYFG

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G41470 Nuclear transport factor 2 (NT... Potri.003G131500
[exp]
0 1
Potri.003G131550
[exp]
3.16 0.9770
AT5G03990 unknown protein Potri.006G045900
[exp]
6.92 0.9594
AT1G16810 unknown protein Potri.005G174400
[exp]
9.74 0.9560
AT5G27690 Heavy metal transport/detoxifi... Potri.002G206900
[exp]
13.37 0.8977
AT3G02300 Regulator of chromosome conden... Potri.017G099900
[exp]
13.41 0.9473
AT4G21320 HSA32 HEAT-STRESS-ASSOCIATED 32, Ald... Potri.011G031600
[exp]
14.10 0.8911
AT5G08391 Protein of unknown function (D... Potri.017G064301
[exp]
14.38 0.9438
AT1G14930 Polyketide cyclase/dehydrase a... Potri.008G131300
[exp]
15.68 0.9630
Potri.003G030200
[exp]
15.77 0.8669
AT3G63310 BIL4 BRZ-INSENSITIVE-LONG HYPOCOTYL... Potri.005G213900
[exp]
18.30 0.9627

Potri.003G131500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.