Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	MMK3.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G01370 655 / 0 ATMPK4 MAP kinase 4 (.1) AT1G01560 628 / 0 ATMPK11 MAP kinase 11 (.1.2) AT4G11330 623 / 0 ATMPK5 MAP kinase 5 (.1) AT2G46070 612 / 0 MAPK12, ATMPK12 mitogen-activated protein kinase 12 (.1.2) AT1G07880 570 / 0 ATMPK13 Protein kinase superfamily protein (.1.2) AT2G43790 546 / 0 ATMAPK6, MAPK6, ATMPK6 MAP kinase 6 (.1) AT3G45640 528 / 0 ATMAPK3, ATMPK3 mitogen-activated protein kinase 3 (.1) AT3G59790 500 / 6e-178 ATMPK10 MAP kinase 10 (.1) AT2G18170 415 / 9e-145 ATMPK7 MAP kinase 7 (.1) AT1G10210 414 / 3e-144 ATMPK1 mitogen-activated protein kinase 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G099900 [exp] 706 / 0 AT4G01370 657 / 0.0 MAP kinase 4 (.1) Potri.002G162500 [exp] 660 / 0 AT4G01370 684 / 0.0 MAP kinase 4 (.1) Potri.014G088500 [exp] 655 / 0 AT4G01370 676 / 0.0 MAP kinase 4 (.1) Potri.007G139800 [exp] 577 / 0 AT2G43790 684 / 0.0 MAP kinase 6 (.1) Potri.017G010200 [exp] 563 / 0 AT2G43790 677 / 0.0 MAP kinase 6 (.1) Potri.009G066100 [exp] 532 / 0 AT3G45640 652 / 0.0 mitogen-activated protein kinase 3 (.1) Potri.001G271700 [exp] 526 / 0 AT3G45640 640 / 0.0 mitogen-activated protein kinase 3 (.1) Potri.005G231100 [exp] 427 / 2e-149 AT1G59580 617 / 0.0 mitogen-activated protein kinase homolog 2 (.1.2) Potri.007G020100 [exp] 420 / 1e-146 AT2G18170 654 / 0.0 MAP kinase 7 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024668 [exp] 699 / 0 AT4G01370 657 / 0.0 MAP kinase 4 (.1) Lus10007921 [exp] 667 / 0 AT4G01370 689 / 0.0 MAP kinase 4 (.1) Lus10017518 [exp] 665 / 0 AT4G01370 632 / 0.0 MAP kinase 4 (.1) Lus10028765 [exp] 662 / 0 AT4G01370 630 / 0.0 MAP kinase 4 (.1) Lus10036384 [exp] 657 / 0 AT4G01370 681 / 0.0 MAP kinase 4 (.1) Lus10032295 [exp] 592 / 0 AT4G01370 572 / 0.0 MAP kinase 4 (.1) Lus10008339 [exp] 574 / 0 AT2G43790 691 / 0.0 MAP kinase 6 (.1) Lus10027091 [exp] 573 / 0 AT2G43790 692 / 0.0 MAP kinase 6 (.1) Lus10036136 [exp] 525 / 0 AT3G45640 654 / 0.0 mitogen-activated protein kinase 3 (.1) Lus10018127 [exp] 523 / 0 AT3G45640 652 / 0.0 mitogen-activated protein kinase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Potri.003G131800.1 pacid=42785273 polypeptide=Potri.003G131812.1.p locus=Potri.003G131800 ID=Potri.003G131800.1.v4.1 annot-version=v4.1 ATGGCTGCTATTAATACCACTAAAGAGTCTAGCAGCTCTGGTTCAACATCAGAGGGAGGAGGAGCTGGTCATCACCATGGAAGTAAAATAAAAGGAGTCT TAACTCATGGAGGTCGTTATGTTCAGTATAATGTTTATGGTAACTTGTTTGAGGTTTCTAGCAAGTATGTCCCTCCTATTAGACCTATTGGTCGTGGTGC TTATGGCATTGTCTGTGCTGCTGTGAATTCAGATACGCATGAGGAAGTTGCTATAAAGAAGATTGGTAATGCATTTGACAACAGAATAGATGCTAAAAGG ACACTGAGGGAAATTATGCTTCTCCGACACATGGATCATGAAAATGTTATTGCTATCAGGGACATAACACGGCCACCCAAAAAGGAGGCCTTCAATGATG TCTACATTGTTTATGAATTAATGGACACTGATCTTCATCAGATTATTCGTTCTGATCAAGCACTGAATGATGATCATTGTCAGTACTTCTTGTATCAGTT ATTGCGAGGATTGAAATATGTACACTCAGCCAATGTTCTGCATCGTGATCTTAAGCCCAGCAATTTGCTTCTCAATTCAAATTGTGACCTTAAAATTGGA GACTTTGGGTTGGCAAGGACAACATCTGAAACAGATTTCATGACTGAGTATGTGGTCACTCGTTGGTACAGAGCACCGGAGTTGCTCCTTAATTGCTCAG AGTACACTGCTGCAATTGACATTTGGTCTGTTGGTTGCATACTTGGTGAGATTATGACCAGAGAACCTTTATTTCCAGGGAAAGATTATGTTCATCAGCT GAGGCTTATTACAGAGTTGATAGGTTCACCCGATGATGCTAGCCTTGGCTTTCTGCGAAGTAATAATGCCCGAAGATATGTTAGACAGCTTCCACAATAC AAAAGGCAAAATTTCTCTGCTAGGTTTCCCAATATGTCTCCAGGAGCTGTTGATCTACTGGAGAAAATGCTTGTGTTTGATCCCAATAACCGCATCACTG TCGATGAGGCTCTTTGTCACTCATACTTGTCATCTCTCCATGACATCAATGATGAGCCTGTCTGCCCCAGGCCTTTTCATTTTGATTTTGAGCACCCATC ATGTACTGAAGAGCACATCAAAGAGCTCATCTGGAGGGAATCAGTGAAGTTCAATCCGGATCTACCCTGTTAG
AA sequence Show only first row Show all	>Potri.003G131800.1 pacid=42785273 polypeptide=Potri.003G131812.1.p locus=Potri.003G131800 ID=Potri.003G131800.1.v4.1 annot-version=v4.1 MAAINTTKESSSSGSTSEGGGAGHHHGSKIKGVLTHGGRYVQYNVYGNLFEVSSKYVPPIRPIGRGAYGIVCAAVNSDTHEEVAIKKIGNAFDNRIDAKR TLREIMLLRHMDHENVIAIRDITRPPKKEAFNDVYIVYELMDTDLHQIIRSDQALNDDHCQYFLYQLLRGLKYVHSANVLHRDLKPSNLLLNSNCDLKIG DFGLARTTSETDFMTEYVVTRWYRAPELLLNCSEYTAAIDIWSVGCILGEIMTREPLFPGKDYVHQLRLITELIGSPDDASLGFLRSNNARRYVRQLPQY KRQNFSARFPNMSPGAVDLLEKMLVFDPNNRITVDEALCHSYLSSLHDINDEPVCPRPFHFDFEHPSCTEEHIKELIWRESVKFNPDLPC

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G01370		ATMPK4	MAP kinase 4 (.1)		Potri.003G131800 [exp]	0	1	MMK3.1
AT1G19440		KCS4	3-ketoacyl-CoA synthase 4 (.1)		Potri.004G155600 [exp]	4.69	0.6323
AT2G42780			unknown protein		Potri.012G059000 [exp]	5.65	0.7217
AT4G39090		EMB3005, RD19A,...	RESPONSIVE TO DEHYDRATION 19A,...		Potri.004G160300 [exp]	5.65	0.6884	RD19.3
AT1G52280		AtRABG3d	RAB GTPase homolog G3D (.1)		Potri.003G053400 [exp]	18.41	0.7059
AT3G02360			6-phosphogluconate dehydrogena...		Potri.008G113700 [exp]	20.12	0.5441	GND.1
AT1G55265			Protein of unknown function, D...		Potri.001G008240 [exp]	22.84	0.5879
AT1G02130		ARA5, AtRABD2a,...	ARABIDOPSIS THALIANA RAB D2A, ...		Potri.003G081800 [exp]	23.04	0.6460	RAB1.6
AT2G24420			DNA repair ATPase-related (.1....		Potri.018G003700 [exp]	24.18	0.6137
AT1G66680		AR401	S-adenosyl-L-methionine-depend...		Potri.015G062400 [exp]	25.92	0.6595	Pt-AR401.1
AT2G46800		ATMTP1, ZAT1, Z...	ZINC TRANSPORTER OF ARABIDOPSI...		Potri.001G450900 [exp]	25.92	0.6321

Compare expression of checked genes

Potri.003G131800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.