Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G52640 346 / 7e-116 AtHsp90-1, ATHS83, ATHSP90.1, HSP83, HSP81-1 HEAT SHOCK PROTEIN 83, HEAT SHOCK PROTEIN 81-1, HEAT SHOCK PROTEIN 90-1, heat shock protein 90.1 (.1) AT5G56000 336 / 3e-112 Hsp81.4, AtHsp90.4 HEAT SHOCK PROTEIN 90.4, HEAT SHOCK PROTEIN 81.4 (.1) AT5G56030 329 / 2e-109 AtHsp90.2, HSP90.2, ERD8, HSP81-2 HEAT SHOCK PROTEIN 90.2, EARLY-RESPONSIVE TO DEHYDRATION 8, HEAT SHOCK PROTEIN 90.2, heat shock protein 81-2 (.1.2) AT5G56010 328 / 3e-109 AtHsp90-3, HSP81-3 HEAT SHOCK PROTEIN 90-3, heat shock protein 81-3 (.1) AT2G04030 193 / 3e-57 Hsp88.1, AtHsp90.5, HSP90.5, CR88, EMB1956 HEAT SHOCK PROTEIN 88.1, EMBRYO DEFECTIVE 1956, HEAT SHOCK PROTEIN 90.5, Chaperone protein htpG family protein (.1.2) AT3G07770 184 / 7e-54 Hsp89.1, AtHsp90-6 HEAT SHOCK PROTEIN 90-6, HEAT SHOCK PROTEIN 89.1 (.1) AT4G24190 184 / 1e-53 AtHsp90-7, HSP90.7, SHD SHEPHERD, HEAT SHOCK PROTEIN 90-7, Chaperone protein htpG family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G073600 [exp] 355 / 3e-120 AT5G52640 1021 / 0.0 HEAT SHOCK PROTEIN 83, HEAT SHOCK PROTEIN 81-1, HEAT SHOCK PROTEIN 90-1, heat shock protein 90.1 (.1) Potri.017G146600 [exp] 355 / 1e-119 AT5G52640 1174 / 0.0 HEAT SHOCK PROTEIN 83, HEAT SHOCK PROTEIN 81-1, HEAT SHOCK PROTEIN 90-1, heat shock protein 90.1 (.1) Potri.001G466000 [exp] 320 / 4e-106 AT5G56000 1132 / 0.0 HEAT SHOCK PROTEIN 90.4, HEAT SHOCK PROTEIN 81.4 (.1) Potri.006G002800 [exp] 318 / 2e-105 AT5G56000 1115 / 0.0 HEAT SHOCK PROTEIN 90.4, HEAT SHOCK PROTEIN 81.4 (.1) Potri.001G286700 [exp] 317 / 1e-104 AT5G56000 1118 / 0.0 HEAT SHOCK PROTEIN 90.4, HEAT SHOCK PROTEIN 81.4 (.1) Potri.016G003400 [exp] 315 / 5e-104 AT5G56000 1148 / 0.0 HEAT SHOCK PROTEIN 90.4, HEAT SHOCK PROTEIN 81.4 (.1) Potri.005G241100 [exp] 191 / 3e-56 AT4G24190 1227 / 0.0 SHEPHERD, HEAT SHOCK PROTEIN 90-7, Chaperone protein htpG family protein (.1.2) Potri.014G164900 [exp] 189 / 1e-55 AT3G07770 1182 / 0.0 HEAT SHOCK PROTEIN 90-6, HEAT SHOCK PROTEIN 89.1 (.1) Potri.008G112700 [exp] 187 / 4e-55 AT2G04030 1201 / 0.0 HEAT SHOCK PROTEIN 88.1, EMBRYO DEFECTIVE 1956, HEAT SHOCK PROTEIN 90.5, Chaperone protein htpG family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027303 [exp] 355 / 1e-119 AT5G52640 1204 / 0.0 HEAT SHOCK PROTEIN 83, HEAT SHOCK PROTEIN 81-1, HEAT SHOCK PROTEIN 90-1, heat shock protein 90.1 (.1) Lus10027517 [exp] 352 / 3e-118 AT5G52640 1230 / 0.0 HEAT SHOCK PROTEIN 83, HEAT SHOCK PROTEIN 81-1, HEAT SHOCK PROTEIN 90-1, heat shock protein 90.1 (.1) Lus10039281 [exp] 350 / 2e-117 AT5G52640 1226 / 0.0 HEAT SHOCK PROTEIN 83, HEAT SHOCK PROTEIN 81-1, HEAT SHOCK PROTEIN 90-1, heat shock protein 90.1 (.1) Lus10039008 [exp] 348 / 8e-117 AT5G52640 1204 / 0.0 HEAT SHOCK PROTEIN 83, HEAT SHOCK PROTEIN 81-1, HEAT SHOCK PROTEIN 90-1, heat shock protein 90.1 (.1) Lus10014964 [exp] 335 / 9e-112 AT5G52640 1177 / 0.0 HEAT SHOCK PROTEIN 83, HEAT SHOCK PROTEIN 81-1, HEAT SHOCK PROTEIN 90-1, heat shock protein 90.1 (.1) Lus10038845 [exp] 335 / 9e-112 AT5G52640 1175 / 0.0 HEAT SHOCK PROTEIN 83, HEAT SHOCK PROTEIN 81-1, HEAT SHOCK PROTEIN 90-1, heat shock protein 90.1 (.1) Lus10027518 [exp] 265 / 2e-89 AT5G52640 478 / 2e-166 HEAT SHOCK PROTEIN 83, HEAT SHOCK PROTEIN 81-1, HEAT SHOCK PROTEIN 90-1, heat shock protein 90.1 (.1) Lus10019206 [exp] 195 / 1e-57 AT2G04030 1283 / 0.0 HEAT SHOCK PROTEIN 88.1, EMBRYO DEFECTIVE 1956, HEAT SHOCK PROTEIN 90.5, Chaperone protein htpG family protein (.1.2) Lus10036843 [exp] 194 / 2e-57 AT2G04030 1278 / 0.0 HEAT SHOCK PROTEIN 88.1, EMBRYO DEFECTIVE 1956, HEAT SHOCK PROTEIN 90.5, Chaperone protein htpG family protein (.1.2) Lus10033135 [exp] 180 / 3e-52 AT4G24190 1224 / 0.0 SHEPHERD, HEAT SHOCK PROTEIN 90-7, Chaperone protein htpG family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00183 [poplar] [flax] HSP90 Hsp90 protein
Representative CDS sequence Show only first row Show all	>Potri.003G131925.4 pacid=42785999 polypeptide=Potri.003G131925.4.p locus=Potri.003G131925 ID=Potri.003G131925.4.v4.1 annot-version=v4.1 ATGCTGCAGCAGAACAAGATTATGAAGGTGATAAGGAAGAATTTGGTGAAGAAGAGTATTGAGATGTTCAATGAGATAGCTGAGAATAAAGAAGACTACA ACAAATTCTATGATGCTTTCTCTAAGAACATTAAATTGGGTATCCATGAAGATAGCCAAAACGGAACCAAGCTTGCCGACTTGCTGAGGCACTACTCAAC CAAGAGTGGTGATGAGGTGACCAGTTTGAAGGACTATGTTACAAGAATGAAAGGACAGAAATACATACACTACATCACTGGTGAGAGCAAGAAAGCAGTC GAGAACTCTCCATTCCTTGAGAAGCTCAAGAGGAAAGGGTATGAAGTTCTTTTCATGGTGGATGCCATTGATGAGTATGTTGTGTCACAATTGAAGGAGT ATGATGGCAAGAAGCTGGTGTCAGCGACCAAGGAAGGGCTGACAGTTGAAGATGACGAGGAGGAGAGAAGGAAGAAAGAAGATAAGCAGCAGTCTTTTGA CAACTTGTGCAAGACAATCAAGGAAATCCTTGGAGACAGGGTGGAGAAAGTAGTGATATCTGATAGGCTTGTGGACTCTCCTTGCTGTTTGGTTACAGGT GAATATGGATGGAGTGCTAACATGGAAAGGATCGTGAAAGCTCAAGCTTTGACACATGTCTAG
AA sequence Show only first row Show all	>Potri.003G131925.4 pacid=42785999 polypeptide=Potri.003G131925.4.p locus=Potri.003G131925 ID=Potri.003G131925.4.v4.1 annot-version=v4.1 MLQQNKIMKVIRKNLVKKSIEMFNEIAENKEDYNKFYDAFSKNIKLGIHEDSQNGTKLADLLRHYSTKSGDEVTSLKDYVTRMKGQKYIHYITGESKKAV ENSPFLEKLKRKGYEVLFMVDAIDEYVVSQLKEYDGKKLVSATKEGLTVEDDEEERRKKEDKQQSFDNLCKTIKEILGDRVEKVVISDRLVDSPCCLVTG EYGWSANMERIVKAQALTHV

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G52640		AtHsp90-1, ATHS...	HEAT SHOCK PROTEIN 83, HEAT SH...		Potri.003G131925 [exp]	0	1
AT5G02390		DAU1	DUO1-activated unknown 1, Prot...		Potri.016G095500 [exp]	5.29	0.9409
					Potri.001G112250 [exp]	6.48	0.9267
AT1G21280			unknown protein		Potri.004G127101 [exp]	7.93	0.9213
AT4G24660	ZF_HD	ATHB22, MEE68, ...	ZINC FINGER HOMEODOMAIN 2, MAT...		Potri.019G081300 [exp]	8.71	0.9526
AT5G41990		EIP1, ATWNK8, W...	EMF1-Interacting Protein 1, wi...		Potri.003G145300 [exp]	9.16	0.9465	WNK8.3
AT3G51970		ATASAT1, ASAT1,...	ARABIDOPSIS THALIANA STEROL O-...		Potri.016G014600 [exp]	14.49	0.9314
					Potri.004G013800 [exp]	17.54	0.9299
AT3G61230	LIM	PLIM2c	PLIM2c, GATA type zinc finger ...		Potri.001G107100 [exp]	19.89	0.9425
					Potri.018G120450 [exp]	24.85	0.8515
AT4G36490		ATSFH12	SEC14-like 12 (.1)		Potri.007G020300 [exp]	25.19	0.9406	Pt-LJPLP.1

Compare expression of checked genes

Potri.003G131925 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.