Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G63930 409 / 2e-141 ROH1 from the Czech 'roh' meaning 'corner' (.1) AT4G11300 310 / 2e-103 Protein of unknown function (DUF793) (.1) AT4G23530 295 / 3e-97 Protein of unknown function (DUF793) (.1) AT1G18740 251 / 4e-80 Protein of unknown function (DUF793) (.1) AT1G74450 243 / 6e-77 Protein of unknown function (DUF793) (.1) AT1G43630 214 / 2e-65 Protein of unknown function (DUF793) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G099700 [exp] 605 / 0 AT1G63930 418 / 5e-145 from the Czech 'roh' meaning 'corner' (.1) Potri.005G192600 [exp] 270 / 1e-87 AT1G18740 461 / 9e-163 Protein of unknown function (DUF793) (.1) Potri.002G067800 [exp] 255 / 1e-81 AT1G18740 463 / 1e-163 Protein of unknown function (DUF793) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028764 [exp] 440 / 8e-154 AT1G63930 477 / 3e-168 from the Czech 'roh' meaning 'corner' (.1) Lus10029782 [exp] 269 / 6e-87 AT1G18740 477 / 1e-168 Protein of unknown function (DUF793) (.1) Lus10042809 [exp] 263 / 2e-84 AT1G74450 470 / 7e-166 Protein of unknown function (DUF793) (.1) Lus10018883 [exp] 258 / 9e-83 AT1G18740 479 / 1e-169 Protein of unknown function (DUF793) (.1) Lus10028578 [exp] 251 / 9e-80 AT1G18740 488 / 4e-173 Protein of unknown function (DUF793) (.1) Lus10017519 [exp] 204 / 1e-64 AT1G63930 233 / 5e-76 from the Czech 'roh' meaning 'corner' (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0133 [poplar] [flax] AT14A-like PF05633 [poplar] [flax] BPS1 Protein BYPASS1-related
Representative CDS sequence Show only first row Show all	>Potri.003G132100.1 pacid=42785425 polypeptide=Potri.003G132100.1.p locus=Potri.003G132100 ID=Potri.003G132100.1.v4.1 annot-version=v4.1 ATGCCTGCTACAGAGCACCAGCCATCATTTCTTGGCAGAATCAGCATTAGAAGAAACCAGGTAACTGCTATGGATGGTAACCATGAGCAAGAGCTAGAAG ACTTGGAGCTTTTTCAAAGGCACATCGGTGATCGTTTTGCTGAATTACTATCACCTCCTGATAATCAAGATTCTCCTTTCTCTGGCGAGTCATTTCTCTC AATTTCTTGGCTAAGAAAACTAGTCGATGTTTTACTGTGCTGTGAGGCAGAATTCAAAGCTGTTTTAATTATGGGGCGTGACCCTTCTCAAATATCTAAA CCACCTTTGGATCGTTCACTAAGTGATTATATGGAGCGTGCTGTTAAAGTTCTTGACATTTGTAATGCGGTTTCTGGTGGGGTTGATTCTATTCGTCAAT GCCAAAAATTGGCTGAGATTATTGTTTCTGCTTTAGAGCAGAAACCAATTGGTGATGGTCAAGTTAAGCGAGCTAAAAAGGCTTTGAGTGCTTTGATGTC TGCTTTGGCAATTGATGATAAAGAAAGTAATCATCCAAGGTATGCAGAGAGAACTTGGTCTTTTGGAAGGAGAGGAAATAACAGTGGGGGTAATCATAAG GACCGAGCTAATCATGGCTCCTTTCGATCTTTATCAATGGTTGTGGCTAAAAACTGGTCTGCTGCAAAACAGATTCAAGCTATGTGTTCTAATTTGGCGG TACCGAGAGGTGGAGAATCAACAGGGTTGGTTCAGCCTGTTTATATAATGAGTAATGTTATGGTTTTTGTGATGTGGGCTCTTGTGGCTGCGATACCATG TCAAGAAAGGAGTGGGTTGTTGACTCATTTTCAGATTCCAAAGCAATTTGGGTGGGCACATAGCATAATTGGGATGCAGGAGAAGATTGGAGAGGAATGG AAAAAGAAAGAGAAGAAAGGGTCAGCTGGATTGCTAGAGGAGATGCAAAGGATGGAGAAGTTGGGGCAGAGTTTGATGGAATTTGCTGATGGATTCCAAT TTCCTGCGGAGGATGAGAAGGTGGAGGAAGCGGCTGCACAGGTGGTGGAGCTGGCAGAGATTTGCCGGAGAATGGAAGAAGGATTGTTGCCTTTACAGCA GCAGATCAGAGAGGTGTTTCATAGGATTGTAAGGAGCAGGACAGAGGTACTTGATTTGTTGGATCATGGGAAAGTTTCTCAACCTATAATATAA
AA sequence Show only first row Show all	>Potri.003G132100.1 pacid=42785425 polypeptide=Potri.003G132100.1.p locus=Potri.003G132100 ID=Potri.003G132100.1.v4.1 annot-version=v4.1 MPATEHQPSFLGRISIRRNQVTAMDGNHEQELEDLELFQRHIGDRFAELLSPPDNQDSPFSGESFLSISWLRKLVDVLLCCEAEFKAVLIMGRDPSQISK PPLDRSLSDYMERAVKVLDICNAVSGGVDSIRQCQKLAEIIVSALEQKPIGDGQVKRAKKALSALMSALAIDDKESNHPRYAERTWSFGRRGNNSGGNHK DRANHGSFRSLSMVVAKNWSAAKQIQAMCSNLAVPRGGESTGLVQPVYIMSNVMVFVMWALVAAIPCQERSGLLTHFQIPKQFGWAHSIIGMQEKIGEEW KKKEKKGSAGLLEEMQRMEKLGQSLMEFADGFQFPAEDEKVEEAAAQVVELAEICRRMEEGLLPLQQQIREVFHRIVRSRTEVLDLLDHGKVSQPII

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G63930		ROH1	from the Czech 'roh' meaning '...		Potri.003G132100 [exp]	0	1
AT3G22970			Protein of unknown function (D...		Potri.008G159800 [exp]	13.63	0.5429
AT1G63930		ROH1	from the Czech 'roh' meaning '...		Potri.001G099700 [exp]	22.71	0.5511
AT3G47160			RING/U-box superfamily protein...		Potri.004G041200 [exp]	54.33	0.4699
AT1G55630			Pentatricopeptide repeat (PPR)...		Potri.015G144100 [exp]	55.30	0.4563
AT4G14660		NRPE7	RNA polymerase Rpb7-like, N-te...		Potri.008G161700 [exp]	81.38	0.4452
AT2G01930	BBR_BPC	BPC1, BBR/BPC1,...	basic pentacysteine1 (.1.2)		Potri.012G040600 [exp]	97.48	0.4425
					Potri.003G014356 [exp]	98.98	0.3957
AT3G61710		AtBECLIN1, ATAT...	BECLIN1, AUTOPHAGY 6 (.1.2.3)		Potri.002G170100 [exp]	286.99	0.3619

Compare expression of checked genes

Potri.003G132100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.