Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-ACS2.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G11280 659 / 0 ATACS6, ACS6 1-aminocyclopropane-1-carboxylic acid (acc) synthase 6 (.1) AT3G61510 648 / 0 AT-ACS1, ACS1 ARABIDOPSIS THALIANA 1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE 1, ACC synthase 1 (.1) AT1G01480 639 / 0 AT-ACC2, ACS2 1-amino-cyclopropane-1-carboxylate synthase 2 (.1.2) AT4G37770 537 / 0 ACS8 1-amino-cyclopropane-1-carboxylate synthase 8 (.1) AT2G22810 528 / 0 ACC4, ACS4, ATACS4 1-AMINOCYCLOPROPANE-1-CARBOXYLIC ACID SYNTHASE POLYPEPTIDE, 1-aminocyclopropane-1-carboxylate synthase 4 (.1) AT5G65800 525 / 0 CIN5, ETO2, ACS5, ATACS5 ETHYLENE OVERPRODUCER 2, CYTOKININ-INSENSITIVE 5, ACC synthase 5 (.1) AT4G26200 524 / 0 ACS7, ATACS7 1-amino-cyclopropane-1-carboxylate synthase 7 (.1) AT3G49700 520 / 0 AtACS9, ACS9, ETO3 ETHYLENE OVERPRODUCING 3, 1-aminocyclopropane-1-carboxylate synthase 9 (.1) AT4G08040 513 / 1e-180 ACS11 1-aminocyclopropane-1-carboxylate synthase 11 (.1) AT5G51690 374 / 2e-125 ACS12 1-amino-cyclopropane-1-carboxylate synthase 12 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G099400 [exp] 911 / 0 AT4G11280 656 / 0.0 1-aminocyclopropane-1-carboxylic acid (acc) synthase 6 (.1) Potri.002G163700 [exp] 680 / 0 AT3G61510 684 / 0.0 ARABIDOPSIS THALIANA 1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE 1, ACC synthase 1 (.1) Potri.018G067000 [exp] 538 / 0 AT4G26200 676 / 0.0 1-amino-cyclopropane-1-carboxylate synthase 7 (.1) Potri.014G012600 [exp] 537 / 0 AT4G37770 755 / 0.0 1-amino-cyclopropane-1-carboxylate synthase 8 (.1) Potri.007G007800 [exp] 533 / 0 AT4G37770 749 / 0.0 1-amino-cyclopropane-1-carboxylate synthase 8 (.1) Potri.006G149600 [exp] 532 / 0 AT4G26200 651 / 0.0 1-amino-cyclopropane-1-carboxylate synthase 7 (.1) Potri.002G113900 [exp] 521 / 0 AT4G37770 682 / 0.0 1-amino-cyclopropane-1-carboxylate synthase 8 (.1) Potri.015G132100 [exp] 399 / 1e-134 AT5G51690 676 / 0.0 1-amino-cyclopropane-1-carboxylate synthase 12 (.1) Potri.003G117700 [exp] 390 / 4e-131 AT1G62960 664 / 0.0 ACC synthase 10 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017521 [exp] 750 / 0 AT4G11280 643 / 0.0 1-aminocyclopropane-1-carboxylic acid (acc) synthase 6 (.1) Lus10007910 [exp] 674 / 0 AT3G61510 659 / 0.0 ARABIDOPSIS THALIANA 1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE 1, ACC synthase 1 (.1) Lus10036396 [exp] 671 / 0 AT3G61510 660 / 0.0 ARABIDOPSIS THALIANA 1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE 1, ACC synthase 1 (.1) Lus10024673 [exp] 664 / 0 AT1G01480 610 / 0.0 1-amino-cyclopropane-1-carboxylate synthase 2 (.1.2) Lus10032301 [exp] 656 / 0 AT1G01480 609 / 0.0 1-amino-cyclopropane-1-carboxylate synthase 2 (.1.2) Lus10028760 [exp] 645 / 0 AT4G11280 570 / 0.0 1-aminocyclopropane-1-carboxylic acid (acc) synthase 6 (.1) Lus10011565 [exp] 537 / 0 AT4G37770 740 / 0.0 1-amino-cyclopropane-1-carboxylate synthase 8 (.1) Lus10008579 [exp] 529 / 0 AT4G26200 664 / 0.0 1-amino-cyclopropane-1-carboxylate synthase 7 (.1) Lus10032695 [exp] 526 / 0 AT4G26200 659 / 0.0 1-amino-cyclopropane-1-carboxylate synthase 7 (.1) Lus10039647 [exp] 518 / 0 AT4G37770 739 / 0.0 1-amino-cyclopropane-1-carboxylate synthase 8 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0061 [poplar] [flax] PLP_aminotran PF00155 [poplar] [flax] Aminotran_1_2 Aminotransferase class I and II
Representative CDS sequence Show only first row Show all	>Potri.003G132300.1 pacid=42784486 polypeptide=Potri.003G132300.1.p locus=Potri.003G132300 ID=Potri.003G132300.1.v4.1 annot-version=v4.1 ATGGTTTTCAAGTTGAATAACCACTTGTTGTCTAGTATAGCAAGCAGCAACGGACATGGTGAAGACTCCCCATATTTTGAAGGCTGGAAAGCCTATGACA GTAATCCCCATCATCCCACGGAGAATCCAAATGGGGTTATCCAGATGGGTCTTGCAGAGAATCAGCTTTGCTTTGATTTGATTCAAGACTGGCTCAAAAA CAACCCAAAAGCCTCCATTTGCACTCCTGAAGGAGTTAATGAGTTCAGAGAGGTAGCTATCTTTCAGGACTATCATGGCCTGCCAGAATTTAGAAATGCT GTAGCAAAGTTCATGGAAAAAGTGAGAGGAAATAAAGTTACATTTGATCCTGACCGCATTGTTATGAATGGAGGAGCTACCGGAGCTCATGAAACAATTG CCTTTTGCTTGGCAGATCCCGGCGAGGCATTTTTGGTACCTACTCCTTATTATCCAGGATTCGATCGAGATTTGAGATGGAGAACAGGAGTAAAACTCAT TCCAGTTGATTCTGAAAGTTCTAACAACTTCAAGGTAACAAGAGAAGCCTTGGAAAATGCCTATGAGATGGCAAAATTAGGCAACATCAAAGTAAAGGGC TTGCTCATAACCAATCCATCAAATCCGTTGGGCACCATGCTAGATAGGGAAACTCTAAGAAGCATTGTGAGCTTCATCAATGAAAAGAACATCCATTTAG TCTGCGATGAGATTTATGCAGCCACGGTTTTCAGCCAGCCTGATTTCATTAGCATAGCAGAGATACTACAGGAAGATATTGAATGCAATCTTGATCTTGT ACACATTGTTTACAGTCTGTCAAAGGACATGGGGTTCCCTGGCCTTAGGGTTGGCATTATCTATTCTTACAATGATGCAGTAGTGAGTTGCGCCCGAAAA ATGTCAAGCTTCGGATTGGTATCCTCGCAAACTCAGCACATGATAGCATCAATGCTATCAGATGATGAATTTGTGGGGAAGTTCATTAGGAAAAGCAAAA GGAGGTTAGCCGCAAGGCATAGAATCTTCACTTATGGACTTGCTCAAGTAAGCATTAAGTGCTTGACGACAAGTAATGCTGGCCTGTTTTTGTGGATGGA TTTGAGTGGACTCCTCGAAGAAAAGACATTTGAAGCTGAAATGGCACTATGGCGAGTTATAATCCATGAAGTCAAGCTCAATGTTTCGCCAGGTTGTTCT TTTCATTGCACAGAGCCAGGGTGGTTTCGGGTTTGCTTTGCCAACATGGATGACCAGACCATGCAAGTTGCTTTGTCAAGAATTAGAACATTTGTCAATA AGGATGTCGACACCAAGAAGCCTAAAAAGACCCTACGCTGGCAAGGCAGCCTTAAACTCAACTCTCCTCGAATATACGATGATTTCATCAATTCCCCGCA CTCTCCCATACCTCAATCGCCCCTTGTTCGAGCAAGGACTTAG
AA sequence Show only first row Show all	>Potri.003G132300.1 pacid=42784486 polypeptide=Potri.003G132300.1.p locus=Potri.003G132300 ID=Potri.003G132300.1.v4.1 annot-version=v4.1 MVFKLNNHLLSSIASSNGHGEDSPYFEGWKAYDSNPHHPTENPNGVIQMGLAENQLCFDLIQDWLKNNPKASICTPEGVNEFREVAIFQDYHGLPEFRNA VAKFMEKVRGNKVTFDPDRIVMNGGATGAHETIAFCLADPGEAFLVPTPYYPGFDRDLRWRTGVKLIPVDSESSNNFKVTREALENAYEMAKLGNIKVKG LLITNPSNPLGTMLDRETLRSIVSFINEKNIHLVCDEIYAATVFSQPDFISIAEILQEDIECNLDLVHIVYSLSKDMGFPGLRVGIIYSYNDAVVSCARK MSSFGLVSSQTQHMIASMLSDDEFVGKFIRKSKRRLAARHRIFTYGLAQVSIKCLTTSNAGLFLWMDLSGLLEEKTFEAEMALWRVIIHEVKLNVSPGCS FHCTEPGWFRVCFANMDDQTMQVALSRIRTFVNKDVDTKKPKKTLRWQGSLKLNSPRIYDDFINSPHSPIPQSPLVRART

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G11280		ATACS6, ACS6	1-aminocyclopropane-1-carboxyl...		Potri.003G132300 [exp]	0	1	Pt-ACS2.2
AT4G00870	bHLH	bHLH014	basic helix-loop-helix (bHLH) ...		Potri.001G083500 [exp]	3.00	0.9077
AT4G00870	bHLH	bHLH014	basic helix-loop-helix (bHLH) ...		Potri.003G147300 [exp]	8.24	0.9036
					Potri.006G038201 [exp]	9.05	0.8775
					Potri.007G133200 [exp]	10.67	0.8706
					Potri.006G038300 [exp]	10.86	0.9128
AT1G07530	GRAS	SCL14, ATGRAS2	GRAS \(GAI, RGA, SCR\) 2, ARAB...		Potri.001G241900 [exp]	11.40	0.8073
AT3G12500		PR-3, PR3, CHI-...	PATHOGENESIS-RELATED 3, basic ...		Potri.009G142000 [exp]	13.41	0.9116
AT2G29060	GRAS		GRAS family transcription fact...		Potri.001G242000 [exp]	19.89	0.8049
AT1G15950		IRX4, ATCCR1, C...	IRREGULAR XYLEM 4, cinnamoyl c...		Potri.001G046100 [exp]	24.49	0.8948
AT2G35215			unknown protein		Potri.003G092100 [exp]	27.01	0.7906

Compare expression of checked genes

Potri.003G132300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.