Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G63970 326 / 3e-114 MECPS, ISPF 2C-METHYL-D-ERYTHRITOL 2,4-CYCLODIPHOSPHATE SYNTHASE, isoprenoid F (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G099300 [exp] 432 / 5e-156 AT1G63970 321 / 4e-112 2C-METHYL-D-ERYTHRITOL 2,4-CYCLODIPHOSPHATE SYNTHASE, isoprenoid F (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017522 [exp] 339 / 3e-119 AT1G63970 310 / 5e-108 2C-METHYL-D-ERYTHRITOL 2,4-CYCLODIPHOSPHATE SYNTHASE, isoprenoid F (.1.2) Lus10028759 [exp] 323 / 1e-109 AT1G63970 290 / 2e-96 2C-METHYL-D-ERYTHRITOL 2,4-CYCLODIPHOSPHATE SYNTHASE, isoprenoid F (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02542 [poplar] [flax] YgbB YgbB family
Representative CDS sequence Show only first row Show all	>Potri.003G132400.1 pacid=42787088 polypeptide=Potri.003G132400.1.p locus=Potri.003G132400 ID=Potri.003G132400.1.v4.1 annot-version=v4.1 ATGGCCATGGCCACAAACCTGTATACTTCATATTCTATAATAGCGACCAAAGCCCACAACAACAAAAGTGTCTCTCTTTCGTTACAACCTGGTACTTACA CCACTAGCCATGTCAAGTTCACTTTACCAATTCAAAAAAGAACCGGACTTTCAATTTCAGCTGCGAGTACTACTGCGACACAAGTAGAGGGATCTGCAAC TTCTAGCAAAGCATCCAGGATTTTGCCTTTTAGGGTGGGTCATGGGTTTGATCTCCATAGGCTGGAACCTGGGTACCCTTTGATTATAGGTGGGATTGAT GTGCCACATGATAGAGGATGTGAAGCTCACTCTGATGGGGATGTGTTACTTCATTGTGTTGTGGATGCAATATTGGGTGCACTGGGGCTCCCTGATATTG GGCAGATATTCCCTGATTCTGATCCTAAATGGAAAGGAGCAGCTTCATCTGTTTTTATCAAAGAAGCTGTGAGACTTATGCACGAGGCAGGTTACGAGAT TGGAAACTTGGACGCTACCTTGATTCTTCAAAGGCCAAAACTGAGCCCACACAAGGAGTCGATCAGGGCCAATTTGTCTGAGCTGCTAGGAGCAGACCCC TCTGTTGTAAATTTGAAAGCAAAAACTCATGAAAAAGTGGATAGCCTTGGTGAGAATAGAAGTATAGCGGCACACACAGTGGTTCTTCTCATGAAGAAGT GA
AA sequence Show only first row Show all	>Potri.003G132400.1 pacid=42787088 polypeptide=Potri.003G132400.1.p locus=Potri.003G132400 ID=Potri.003G132400.1.v4.1 annot-version=v4.1 MAMATNLYTSYSIIATKAHNNKSVSLSLQPGTYTTSHVKFTLPIQKRTGLSISAASTTATQVEGSATSSKASRILPFRVGHGFDLHRLEPGYPLIIGGID VPHDRGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAASSVFIKEAVRLMHEAGYEIGNLDATLILQRPKLSPHKESIRANLSELLGADP SVVNLKAKTHEKVDSLGENRSIAAHTVVLLMKK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G63970		MECPS, ISPF	2C-METHYL-D-ERYTHRITOL 2,4-CYC...		Potri.003G132400 [exp]	0	1
AT3G27750		EMB3123	EMBRYO DEFECTIVE 3123, unknown...		Potri.003G051400 [exp]	1.00	0.9857
AT1G75350		EMB2184	embryo defective 2184, Ribosom...		Potri.002G033300 [exp]	2.44	0.9823
AT2G42975			unknown protein		Potri.002G058000 [exp]	2.82	0.9751
AT5G07580	AP2_ERF		Integrase-type DNA-binding sup...		Potri.001G079600 [exp]	3.16	0.9742
AT1G06040	CO	BBX24, STO	SALT TOLERANCE, B-box domain p...		Potri.007G130100 [exp]	3.87	0.9645
AT4G32260		PDE334	PIGMENT DEFECTIVE 334, ATPase,...		Potri.018G026500 [exp]	4.24	0.9770
AT4G32260		PDE334	PIGMENT DEFECTIVE 334, ATPase,...		Potri.006G255600 [exp]	7.48	0.9714
AT5G64480			unknown protein		Potri.001G286200 [exp]	9.00	0.9689
AT4G28025			unknown protein		Potri.006G175600 [exp]	9.21	0.9619
AT2G36690			2-oxoglutarate (2OG) and Fe(II...		Potri.008G029700 [exp]	9.27	0.9492

Compare expression of checked genes

Potri.003G132400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.