Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G63980 328 / 1e-109 D111/G-patch domain-containing protein (.1.2) AT3G52350 43 / 0.0001 D111/G-patch domain-containing protein (.1) AT5G08535 40 / 0.0005 D111/G-patch domain-containing protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G064600 [exp] 47 / 2e-05 AT3G52120 509 / 1e-179 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / D111/G-patch domain-containing protein (.1), SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / D111/G-patch domain-containing protein (.2) Potri.001G269900 [exp] 45 / 8e-05 AT3G52120 500 / 3e-176 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / D111/G-patch domain-containing protein (.1), SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / D111/G-patch domain-containing protein (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024674 [exp] 404 / 3e-139 AT1G63980 352 / 3e-119 D111/G-patch domain-containing protein (.1.2) Lus10017524 [exp] 387 / 1e-132 AT1G63980 361 / 5e-123 D111/G-patch domain-containing protein (.1.2) Lus10032300 [exp] 254 / 1e-81 AT1G63980 227 / 2e-71 D111/G-patch domain-containing protein (.1.2) Lus10037485 [exp] 47 / 2e-05 AT3G52120 457 / 3e-158 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / D111/G-patch domain-containing protein (.1), SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / D111/G-patch domain-containing protein (.2) Lus10015703 [exp] 47 / 3e-05 AT3G52120 477 / 2e-166 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / D111/G-patch domain-containing protein (.1), SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / D111/G-patch domain-containing protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0449 [poplar] [flax] G-PATCH PF01585 [poplar] [flax] G-patch G-patch domain
Representative CDS sequence Show only first row Show all	>Potri.003G132600.1 pacid=42785986 polypeptide=Potri.003G132600.1.p locus=Potri.003G132600 ID=Potri.003G132600.1.v4.1 annot-version=v4.1 ATGGCCGCACCTGAAGCCCCTCTCCGTTACGTCGGTATCGTTAGGGAATCCCCTGCTTTCCGCCTCATGAAACAAATGGGATGGGAAGAAGGAGAGGGGT TAGGGAAAGATAAACAGGGGATCAAGGGTTATGTTAGAGTAAAAAACAAACAGGACACTACAGGTGTTGGAGTAGAGAAGCCTAATAACTGGGCATTTGA TACCACCCAATTTGATAGCATCCTTAAAAGACTGAAAGTGCAAGCTGTGCAAAGTAATGATGAAGTTTTTCTGCGTCCAACAGAGGTTGTGAAGGAGAAC AGCAGTGAAGAAAAAACTGAGACTGATGCAACTAATGATGCTAAGGAACAAGTTGTCAAGGCTACTCGAGCACGGGGAAGATATCATAAAAGAGAGAGGG GGAAGCTTGTCAATGCATATTCTTCAAAGGATCTCTCAGGGATTCTTGTAAAAAAATCAGAGGAGTTACCTCAGACAGATCCAAATCCAGACAATGAGTT GGAGTCTGAATCTGCACTTGAGAGTCAAATATGGTATCTTGGAGGAAGCAAGGTTGAAGATCTTCCTCCAGATTGGTGGGGTTTTAAACACGGGTTTGTA TCTGGTGGTTTACTTGGAGCAAAGCCTGCCAAAAAGAAATCAACCAGAACTGCTGATACTCACAATCGTAATGAAAGGGCCATGTTCTTTGAAGAAGATC AAGAGAATCTCTACAAACTTGTCCAAGACAAAGCTACATCTGGAAAGCAAGGGTTGGGTATTAAGGATCGGCCAAAGAAAATAGCTGGTGTTCGCTTTCA GGGGAAAAAGACCACCTTTGACAACAGTGATGATGAGGATTCTGCATCTGATGACGACGACTCTGATGCTGATGACAAATGTTCTGCTGATTTTCCCTCA GCAAAACAAAATTGTGATGGCATTCTGGAAATGGAAAATGTTGAAGCGAAAATTGTTGACAAGGATTCTGTTGATTTCTGTTCATCAGGAAAACGTAAAC GTGAGGACACTCCCAAAATGCAGGAACTTAATGAACAAAAAGTGAAGTTGAAAAGCCTGTGTAAAAGGCTCCTGCACCAGGTGCCGGGAGAGTCATTAAA GCTTAAAAAGCTGAAAAGTCTGGTTGAAGAACACTCACCAGCTGTTTTTTCAAACTTCACTTCCAGGAGAGATGCTGTTGCTTACTTGAAGCAAAAGCTG GAAGGTTGCAAGAAGTTCTCCGTTGAGGGAAAGAGAGTGAGTCTAACATCCAGGAGAAGCTGA
AA sequence Show only first row Show all	>Potri.003G132600.1 pacid=42785986 polypeptide=Potri.003G132600.1.p locus=Potri.003G132600 ID=Potri.003G132600.1.v4.1 annot-version=v4.1 MAAPEAPLRYVGIVRESPAFRLMKQMGWEEGEGLGKDKQGIKGYVRVKNKQDTTGVGVEKPNNWAFDTTQFDSILKRLKVQAVQSNDEVFLRPTEVVKEN SSEEKTETDATNDAKEQVVKATRARGRYHKRERGKLVNAYSSKDLSGILVKKSEELPQTDPNPDNELESESALESQIWYLGGSKVEDLPPDWWGFKHGFV SGGLLGAKPAKKKSTRTADTHNRNERAMFFEEDQENLYKLVQDKATSGKQGLGIKDRPKKIAGVRFQGKKTTFDNSDDEDSASDDDDSDADDKCSADFPS AKQNCDGILEMENVEAKIVDKDSVDFCSSGKRKREDTPKMQELNEQKVKLKSLCKRLLHQVPGESLKLKKLKSLVEEHSPAVFSNFTSRRDAVAYLKQKL EGCKKFSVEGKRVSLTSRRS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G63980			D111/G-patch domain-containing...		Potri.003G132600 [exp]	0	1
AT1G14060			GCK domain-containing protein ...		Potri.013G099100 [exp]	1.41	0.7383
AT5G49300	GATA	GATA16	GATA transcription factor 16 (...		Potri.002G199800 [exp]	3.16	0.7061
AT1G31600		AtTRM9	Arabidopsis thaliana tRNA meth...		Potri.003G106300 [exp]	3.46	0.6855
AT3G56990		EDA7	embryo sac development arrest ...		Potri.016G037400 [exp]	10.95	0.6948
AT5G61330			rRNA processing protein-relate...		Potri.019G085100 [exp]	11.48	0.6475
AT5G08420			RNA-binding KH domain-containi...		Potri.007G065500 [exp]	12.64	0.6477
AT2G45240		MAP1A	methionine aminopeptidase 1A (...		Potri.014G067300 [exp]	18.38	0.6270	MAP1.3
AT3G25890	AP2_ERF	CRF11	cytokinin response factor 11, ...		Potri.008G120100 [exp]	22.49	0.6290	ERF79
AT2G40940		ERS1	ethylene response sensor 1 (.1...		Potri.002G201500 [exp]	23.66	0.5986	ERS1.1,ETR1
AT3G19360	C3HZnF		Zinc finger (CCCH-type) family...		Potri.009G130600 [exp]	25.92	0.6432

Compare expression of checked genes

Potri.003G132600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.