Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G01250 121 / 6e-32 WRKY ATWRKY22, WRKY22 WRKY family transcription factor (.1) AT5G52830 119 / 8e-31 WRKY ATWRKY27, WRKY27 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 27, WRKY DNA-binding protein 27 (.1) AT4G23550 113 / 6e-29 WRKY ATWRKY29, WRKY29 WRKY family transcription factor (.1) AT2G34830 97 / 4e-22 WRKY ATWRKY35, WRKY35, MEE24 maternal effect embryo arrest 24, WRKY DNA-binding protein 35 (.1) AT5G45050 96 / 1e-21 WRKY ATWRKY16, TTR1 TOLERANT TO TOBACCO RINGSPOT NEPOVIRUS 1, Disease resistance protein (TIR-NBS-LRR class) (.1), Disease resistance protein (TIR-NBS-LRR class) (.2) AT1G30650 94 / 3e-21 WRKY ATWRKY14, AR411, WRKY14 WRKY DNA-binding protein 14 (.1) AT1G29280 81 / 1e-17 WRKY ATWRKY65, WRKY65 WRKY DNA-binding protein 65 (.1) AT3G58710 79 / 9e-17 WRKY ATWRKY69, WRKY69 RABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 69, WRKY DNA-binding protein 69 (.1.2) AT5G45260 70 / 7e-13 WRKY ATWRKY52, SLH1, RRS1 SENSITIVE TO LOW HUMIDITY 1, RESISTANT TO RALSTONIA SOLANACEARUM 1, ARABIDOPSIS THALIANA WRKY DOMAIN PROTEIN 52, Disease resistance protein (TIR-NBS-LRR class) (.1), Disease resistance protein (TIR-NBS-LRR class) (.2) AT4G31550 67 / 3e-12 WRKY ATWRKY11, WRKY11 WRKY DNA-binding protein 11 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G099001 [exp] 398 / 1e-139 AT4G01250 138 / 2e-38 WRKY family transcription factor (.1) Potri.002G164400 [exp] 132 / 9e-36 AT4G01250 244 / 4e-79 WRKY family transcription factor (.1) Potri.014G090300 [exp] 127 / 1e-33 AT4G01250 250 / 1e-81 WRKY family transcription factor (.1) Potri.004G072000 [exp] 109 / 8e-27 AT5G52830 182 / 2e-53 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 27, WRKY DNA-binding protein 27 (.1) Potri.017G149000 [exp] 109 / 1e-26 AT5G52830 192 / 2e-57 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 27, WRKY DNA-binding protein 27 (.1) Potri.001G460600 [exp] 104 / 6e-25 AT1G30650 322 / 2e-106 WRKY DNA-binding protein 14 (.1) Potri.011G157100 [exp] 104 / 6e-25 AT1G30650 305 / 1e-99 WRKY DNA-binding protein 14 (.1) Potri.011G070100 [exp] 79 / 8e-17 AT1G29280 237 / 3e-78 WRKY DNA-binding protein 65 (.1) Potri.002G195300 [exp] 78 / 1e-16 AT2G34830 120 / 1e-31 maternal effect embryo arrest 24, WRKY DNA-binding protein 35 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032303 [exp] 135 / 2e-37 AT4G01250 171 / 1e-51 WRKY family transcription factor (.1) Lus10024676 [exp] 112 / 5e-29 AT4G01250 163 / 7e-49 WRKY family transcription factor (.1) Lus10007907 [exp] 113 / 2e-28 AT4G01250 228 / 2e-72 WRKY family transcription factor (.1) Lus10036399 [exp] 109 / 6e-28 AT4G01250 207 / 2e-66 WRKY family transcription factor (.1) Lus10027538 [exp] 108 / 2e-26 AT5G52830 171 / 1e-49 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 27, WRKY DNA-binding protein 27 (.1) Lus10039295 [exp] 106 / 4e-26 AT5G52830 170 / 4e-50 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 27, WRKY DNA-binding protein 27 (.1) Lus10038426 [exp] 101 / 1e-24 AT2G34830 252 / 1e-81 maternal effect embryo arrest 24, WRKY DNA-binding protein 35 (.1) Lus10018815 [exp] 90 / 1e-19 AT4G01250 149 / 4e-41 WRKY family transcription factor (.1) Lus10015229 [exp] 78 / 2e-16 AT1G29280 197 / 1e-62 WRKY DNA-binding protein 65 (.1) Lus10007305 [exp] 77 / 2e-16 AT1G29280 164 / 9e-51 WRKY DNA-binding protein 65 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0274 [poplar] [flax] WRKY-GCM1 PF03106 [poplar] [flax] WRKY WRKY DNA -binding domain
Representative CDS sequence Show only first row Show all	>Potri.003G132700.1 pacid=42785892 polypeptide=Potri.003G132700.1.p locus=Potri.003G132700 ID=Potri.003G132700.1.v4.1 annot-version=v4.1 ATGATGGATGAATTTGTTTGCATGGAGGACAGCTGGGATCTGCACGCTGTGGTAAGGTCAGGAAGCAGTACTAATTATGAAGATTTTGCCAACATCACGA ACAACCCACCTTCCTTGTTTGCTCCCTTGAGTTTTTATCAAGATGAGCTCTTAAATTTCCAAGAAACCCCAACAGATTTTGATGGACTAGATGGCCTTTA CAAGCCCCTTTACCCTTTGTTGCACCAGACCTTTAATTCTCCACAAAGCAATATCCTGAGTACCAGTATCAGCACCACATCCATATCTGTTCCAAAAGAA GTTAAAGAGAGACAAAAGGTGCAGAAAAAGAAGCCTGTTTCTCCTGAATCTGCTACTTTTGCAAATACTGTTGATGCTACTAGTGCGGCCAAATCAAAAA GGAGGAAGAATCAGCACAAAAAAGTGGTTCAACACGTGAAAGAAGATGGTCTCTCATCTGATATGTGGGCTTGGCGCAAATATGGGCAGAAACCCATCAA GGGATCCCCATATCCAAGGAGCTACTACAGATGCAGCAGTCTAAAGGGATGTTTGGCAAGAAAGCAAATGGAAAGAAGCCGTACAGATCCATCAACATTT ATCATAACCTACACAGCTGAGCATAGCCATGCCCATCCTACTCGAAGAAGCTCCCTCGCCGGTAGCACCCGAATCAAGCCATCTATGCCTAAAGAAGCCA CTAAGAATATTGAGCCCAATATGCCAACAATAAAAGACGAACTTTCGCCGAATTTTGATGGGGTTCTCTCCCCAACAACCCCTTCAGTGACTTCCATTGA AGATGAATTGGTGCAAAATGTGTGTATTAAAAATGAAGAATTATTAGATCAAGGGCAGGTTTTGGACGAAATTGCCTTGCCAGATATATTATTCAGTGAC GAATTATTTCCGAGTATAGAGGATTTGGAAGGGCTTCTTCTGGATGAATTTGCAGATTGTCGATCATCCAATATACCCACAACTAGCTCTTAA
AA sequence Show only first row Show all	>Potri.003G132700.1 pacid=42785892 polypeptide=Potri.003G132700.1.p locus=Potri.003G132700 ID=Potri.003G132700.1.v4.1 annot-version=v4.1 MMDEFVCMEDSWDLHAVVRSGSSTNYEDFANITNNPPSLFAPLSFYQDELLNFQETPTDFDGLDGLYKPLYPLLHQTFNSPQSNILSTSISTTSISVPKE VKERQKVQKKKPVSPESATFANTVDATSAAKSKRRKNQHKKVVQHVKEDGLSSDMWAWRKYGQKPIKGSPYPRSYYRCSSLKGCLARKQMERSRTDPSTF IITYTAEHSHAHPTRRSSLAGSTRIKPSMPKEATKNIEPNMPTIKDELSPNFDGVLSPTTPSVTSIEDELVQNVCIKNEELLDQGQVLDEIALPDILFSD ELFPSIEDLEGLLLDEFADCRSSNIPTTSS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G01250	WRKY	ATWRKY22, WRKY2...	WRKY family transcription fact...		Potri.003G132700 [exp]	0	1
AT2G45360			Protein of unknown function (D...		Potri.014G068900 [exp]	2.00	0.9721
AT5G60900		RLK1	receptor-like protein kinase 1...		Potri.001G228200 [exp]	2.00	0.9711
AT5G36930			Disease resistance protein (TI...		Potri.019G001971 [exp]	3.74	0.9509
AT4G17810	C2H2ZnF	ZFP12	C2H2 and C2HC zinc fingers sup...		Potri.002G041600 [exp]	4.47	0.9629
AT2G26710		CYP72B1, CYP734...	PHYB ACTIVATION TAGGED SUPPRES...		Potri.010G139400 [exp]	4.89	0.9655
AT5G10530			Concanavalin A-like lectin pro...		Potri.001G283212 [exp]	5.09	0.9537
AT2G38310		RCAR10, PYL4	regulatory components of ABA r...		Potri.006G104100 [exp]	5.83	0.9371
AT4G23340			2-oxoglutarate (2OG) and Fe(II...		Potri.003G106900 [exp]	6.32	0.9555	2OGox20
					Potri.019G016110 [exp]	6.48	0.9627
AT1G07160			Protein phosphatase 2C family ...		Potri.019G071600 [exp]	8.36	0.9627

Compare expression of checked genes

Potri.003G132700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.