Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G11270 1541 / 0 Transducin/WD40 repeat-like superfamily protein (.1) AT1G10580 49 / 3e-05 Transducin/WD40 repeat-like superfamily protein (.1) AT5G25150 47 / 0.0001 TAF5 TBP-associated factor 5 (.1) AT5G49200 45 / 0.0005 C3HZnF WD-40 repeat family protein / zfwd4 protein (ZFWD4) (.1) AT1G73720 44 / 0.0008 SMU1 SUPPRESSORS OF MEC-8 AND UNC-52 1, transducin family protein / WD-40 repeat family protein (.1) AT5G52820 44 / 0.001 WD-40 repeat family protein / notchless protein, putative (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G098700 [exp] 2596 / 0 AT4G11270 1534 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.006G263400 [exp] 50 / 2e-05 AT5G25150 1018 / 0.0 TBP-associated factor 5 (.1) Potri.018G020200 [exp] 48 / 6e-05 AT5G25150 984 / 0.0 TBP-associated factor 5 (.1) Potri.014G077800 [exp] 47 / 0.0001 AT5G51980 391 / 5e-132 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.009G058000 [exp] 44 / 0.0006 AT5G52820 811 / 0.0 WD-40 repeat family protein / notchless protein, putative (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024447 [exp] 46 / 0.0002 AT5G25150 1006 / 0.0 TBP-associated factor 5 (.1) Lus10029493 [exp] 44 / 0.001 AT5G52820 786 / 0.0 WD-40 repeat family protein / notchless protein, putative (.1) Lus10034648 [exp] 44 / 0.001 AT3G42660 1083 / 0.0 transducin family protein / WD-40 repeat family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.003G132900.1 pacid=42787455 polypeptide=Potri.003G132900.1.p locus=Potri.003G132900 ID=Potri.003G132900.1.v4.1 annot-version=v4.1 ATGAAGTGCCGATCCGTGGCGTGTATATGGCCAGATACACCTCCACCTCACAAAGTCACCGCCTCCGCCGCACTTAACCACCCACCAACTCTCTACACTG GTGGATCCGATGGCTCCATTCTCTGGTGGAACCTCTCCTCTTCCGATACCAACTCGGAAATTAAACCGGTTGCGATGCTTTGTGGCCATGCTGCACCGAT AGCTGGTCTTAGCATCTGTTGTCCCATGGTGGTTACGGGAGATGATACGAAAACGGAATGTTCGAGTAATGGTGATGGAAGTTATGGTGCGTTAATTAGT GCGTGTACCGATGGTGTGTTGTGTGTTTGGAGTAGAGGAAGTGGACATTGCCGGCGTAGAAGGAAACTTCCCCCTTGGGTTGGAAGCCCGTGTATTGTTC GGACATTGCCAACGAGTCCGCGATATGTGTGTATAGGGTGTTGTTTTATTGATGCGCATGCTCATTTTTCAGATCCTCGTTCAATTGATTCTTTTGAAGG GGGCGAGGCTTCGGTGGATAAAGGTCGTAAGCATGGTAAACATTCAAAGACTACCGTTGTGATTGTTGATACGCATGGTCTTACTATTGTACAGACTGTT TTTCATGGAAATTTATCAATTGGGCGATTGGATTTTATGGATATAGTCTTGTTGGGTGAGGATGGAGAGAAGCATTCTGTTTTAATGGCTGATTCGTCTG GTAGGGTGGAATTGGTTCCGATTTTGAAAGAGTCGAATGCAGGTGGTGATGATGGGAGTGGCTCGAGTAAGAGTTCTCAGTTGGAAGTGGTTAATTGGGG AAATAAGTTGAGTGAAGGAGGACAGGTTGTGTCAATTGCAACCCGCGGGGACCTTATCGCTCTAGTGTTGAAAACTCGTTGCATATTTAGGATATTGTCC AGCGACGCCTCAATTGGAGAGATTTCTTTTGCCGAGGATATCCTTTGCGTTGAGGAACATTCTAATCAATCACATGTTTTGGGGGGCATGTTTCTTGAAA TTGGTGATACTGGTGAAATGCAGAATGCACAGTATGATAATTTCTTGGGACATTTTGCTGTGTGGAATAGAAGAGGTTCTGCTATTGTATATATTGTATC GTATTTGAATAATGTATTTAAATCTGAAACGCTCTGCGAGATTCCTTCTTCTTCTTGTCCTGCTGATGTGAGATTGTTATTTTCTTTCATTCAGTTGAAA AATTATCTTCTTCGAATCGAATCTGTTTGCTATGATGATGAAGAGCCTTTACGGTGGAAACCCCATGTCACAATCTGGTCTCTATGTCAAAAGAATAATA TCCATGGAAAGTCATCCCGACAATGCAAAATGCTTGGTGAAAGTGATTTTTTGGCTGAATGGATCTCAAGCTCTAGCCTCCATGAAATCAATAGCCAGGG TGGCAGGAAAATGAGGATTACTTCTTTGCAAAGCTCTTTTCGAAAAGCAAGAACTGAAAATAATAAACATGCAGAGGATGAAAGTTTTAGTTTTGTGCAC AATGGACTAGCTGTATCCTCTTCCATGGTTATTTCTGAAAACCATTTTGTTCCTTATGCTGTCGTGTATGGCTTCTTTAGTGGTGAAATAGAAGTTGTCC GATTTGATATGCTTCTTGGACCAGATTGTCATGGTGAAAGTCCAAGTCATGATGTAGAACCACCTGTTTCCAGGCAATGCTTTTCAGGGCACACAGGTGC TGTGCTTTGTTTGGCAGCACATCGGATGATGGGTGCTGCCAAAGGATGGAGTTTCAGTCATGTTTTAGTTTCTGGAAGCATGGACTGCACAATTCGCATC TGGGATCTCGACACTGGAAACCTCATTACAGTGATGCGACAACATGTAGCTTCAGTGCGCCAAATAATCTTTCCCTCAGCATGGACAGAACGTCCTTGGG GTGATTGCTTTCTCTCTGTTGGTGAGGACTCATGTGTTGCTCTTGCTTCTCTTGAAACTTTGCGTGTAGAGAGAATGTTTCCAGGACACCCAAGCTATCC TGAAAAGGTTGTGTGGGATGGTGCAAGAGGTTACATTGCATGTCTTTGCTGGAGCCATTCAGGATTATCTGACACCTCTGATACTTTATACATTTGGGAT GTAAAAACAGGTGCCCGAGAGCGGGTCCTTTGTGGAACAGCCTCTCACTCAATGCTGGATCATTTTTGTAAAGGAATCAGTGTGAATTCTTTATCTGGTT CAATATTGAATGGAAACACTTCAGTGTCCTCGTTGCTTCTTCCAATACTTGAAGATGGAAACTTCTCTCAATCTCACTCAAAGCTTTCAGAGAAGGTCAG CTCACCAAGAATGACGTCAAGCATGAAAATCACAATGGACCCCACTACTTCCCAAGGACAGGTCAAGAAAGGAATATTTCCATCCACGCCATCTTTTCTA CAAATGAACAAGCATGCCATTGGGTGCACTTGCCCGTTCCCTGGAATTGCAGCCCTGAGTTTTGACCTTGCATCCTTGATGTTTTCTTGTCAGAAACATG AGCCTGCAGCTAATGGTGGTGTTAAGCTTAAGGAACGGGGAACTAGCAACCCAAGAACCCATGATATGAACTTTGATGATGGTTCTGATAAGAATAGGAC CTCAACTGATACAGTTGAAGAGCATGAGTGCATTAGGTCACAAGAAGAATATTTTCTTCGATTTAGCTTGTCATTTTTGCATCTGTGGGATCTGGATATC GAGCTTGATAAATTGCTAGTAACAGAAATGAAGCTAAATCGGCCAGAGAATTTAATTATAGCTTCTGGTTTGCAAGGTGACAAGGGGTCTTTGACACTGT CGTTTCCTGGTTTGAGTTCTATTCTTGAGCTCTGGAAATCATCATCGGAGTTCTGTGCAATGAGGTCGCTTACGATGCTGTCCATTGCCCAACGAATGAT TAGCTTCTCTCACTGCAGTTCACCAGCCAGCAGTGCCTTGGCAGCATTTTACACTCGAAGCCTTGCTGACAAGATTCCAGATATAAAGCCACCTTTACTC CAGCTTCTGGTGAGTTTTTGGCAAGATGAAAGTGAACATGTACGCATGGCTGCACGCACTTTATTCCACTGTGCTGCTTCACGGGCTATCCCAATCCCTC TATGTGATAAAAAAGCAAATGCTAACAGAGAACTTGTGAGATCTTTGAGTGAAATTGGAGAAAATGAAGGTCAAGTTTCAAAAGTAGGTGGGACATCTAC AAATGGTTTGTCATCTGATATGTCACCTGAACCTCAAGCAACCTCTCTAGCTGCAGAATCTCCTGACAAGTCACTGGAAAAACAAGGAATTACTGAAGCA GAAAGATTCAAAATACTTGATTGGCTAGAATCATATGAAATGCAAGACTGGATATCGTGTGTTGGGGGGACAAGTCAAGATGCAATGACATCTCACATCA TTGTTGCAGCTGCATTGGCTATGTGGTACCCTAGCCTTGTCAAACCAAGCCTTGCCACATTGGTTGCTCATCCTTTAGTAAAGTTGGTCATGGCCATGAA TGAAACATACAGTTCCACTGCAGCAGAGCTTCTATCAGAAGGTATGGAGAGTACATGGAAGGCATGCATTAATTCTGAAATATCTCGCCTCATTGGGGAC ACATTCTTCCAGATAGAGTATGTAAGCGGTCAATCTGCCAACACAGCTGGACATCGTCCTCCTGTACCATCTTCCATTCAAGAGACTTTGGTTGGGATTC TTCTTCCAAATTTAGCTATGGCTGATATACCGGGGTTTTTAAATGTCATTGAGAGCCAAATTTGGTCCACTGCATCTGATTCACCTGTTCATCTGGTATC CCTCACAACTCTTATAAGGGTTATGCGTGGTTCTCCACGGCAGTTGTCTCAGTATCTTGATAAGGTGGTTAGCTTCATTTTACACACTATAGATCCTGGC AACTCAATCATGCGTAAAACTTGTCTTCAAAGTTCAATGACAGCATTAAAGGAAATGGTACGGGCATTTCCTATGGTAGCCCTGAATGACACATCTACCA GATTGGCTGTTGGGGATGCAATTGGAGAGATTAATAATGCTACCATTTCAGTTTATGACATGCAAAGTGTGACAAAAATAAAAGTCTTGGATGCAAGTGG ACCTCCTGGCCTTCCAAATTTGCTGTCAGGAACATCAGAAATGGCAGTGACCACTGTAATTTCAGCTTTGAGCTTTGCCCCTGATGGAGAGGGGCTGGTT GCATTTTCTGAGCATGGTTTGATGATAAGATGGTGGTCCCTGGGATCTGTGTGGTGGGAGAAACTTAGTCGTAACTTGGCTCCTGTCCAGTGCACGAAAG TCATATTTGTTCCTCCATGGGAAGGATTTTCACCCAATTCTTCTAGGTCTAGCATAATAGCAAACATATTGGGGCATGATAGCCAGGTCAATATGCAGGA GAAAGCTCGGGATTCAACTTATGCTGATAGTTTGAAAATGTTGATTCATAATCTGGACCTCTCTTACCGACTACAATGGGTCAGTGAACGTAAGGTACTT CTTTCAAGGCATGGCCAGGAGCTGGGAACTTTCCCACTGTAA
AA sequence Show only first row Show all	>Potri.003G132900.1 pacid=42787455 polypeptide=Potri.003G132900.1.p locus=Potri.003G132900 ID=Potri.003G132900.1.v4.1 annot-version=v4.1 MKCRSVACIWPDTPPPHKVTASAALNHPPTLYTGGSDGSILWWNLSSSDTNSEIKPVAMLCGHAAPIAGLSICCPMVVTGDDTKTECSSNGDGSYGALIS ACTDGVLCVWSRGSGHCRRRRKLPPWVGSPCIVRTLPTSPRYVCIGCCFIDAHAHFSDPRSIDSFEGGEASVDKGRKHGKHSKTTVVIVDTHGLTIVQTV FHGNLSIGRLDFMDIVLLGEDGEKHSVLMADSSGRVELVPILKESNAGGDDGSGSSKSSQLEVVNWGNKLSEGGQVVSIATRGDLIALVLKTRCIFRILS SDASIGEISFAEDILCVEEHSNQSHVLGGMFLEIGDTGEMQNAQYDNFLGHFAVWNRRGSAIVYIVSYLNNVFKSETLCEIPSSSCPADVRLLFSFIQLK NYLLRIESVCYDDEEPLRWKPHVTIWSLCQKNNIHGKSSRQCKMLGESDFLAEWISSSSLHEINSQGGRKMRITSLQSSFRKARTENNKHAEDESFSFVH NGLAVSSSMVISENHFVPYAVVYGFFSGEIEVVRFDMLLGPDCHGESPSHDVEPPVSRQCFSGHTGAVLCLAAHRMMGAAKGWSFSHVLVSGSMDCTIRI WDLDTGNLITVMRQHVASVRQIIFPSAWTERPWGDCFLSVGEDSCVALASLETLRVERMFPGHPSYPEKVVWDGARGYIACLCWSHSGLSDTSDTLYIWD VKTGARERVLCGTASHSMLDHFCKGISVNSLSGSILNGNTSVSSLLLPILEDGNFSQSHSKLSEKVSSPRMTSSMKITMDPTTSQGQVKKGIFPSTPSFL QMNKHAIGCTCPFPGIAALSFDLASLMFSCQKHEPAANGGVKLKERGTSNPRTHDMNFDDGSDKNRTSTDTVEEHECIRSQEEYFLRFSLSFLHLWDLDI ELDKLLVTEMKLNRPENLIIASGLQGDKGSLTLSFPGLSSILELWKSSSEFCAMRSLTMLSIAQRMISFSHCSSPASSALAAFYTRSLADKIPDIKPPLL QLLVSFWQDESEHVRMAARTLFHCAASRAIPIPLCDKKANANRELVRSLSEIGENEGQVSKVGGTSTNGLSSDMSPEPQATSLAAESPDKSLEKQGITEA ERFKILDWLESYEMQDWISCVGGTSQDAMTSHIIVAAALAMWYPSLVKPSLATLVAHPLVKLVMAMNETYSSTAAELLSEGMESTWKACINSEISRLIGD TFFQIEYVSGQSANTAGHRPPVPSSIQETLVGILLPNLAMADIPGFLNVIESQIWSTASDSPVHLVSLTTLIRVMRGSPRQLSQYLDKVVSFILHTIDPG NSIMRKTCLQSSMTALKEMVRAFPMVALNDTSTRLAVGDAIGEINNATISVYDMQSVTKIKVLDASGPPGLPNLLSGTSEMAVTTVISALSFAPDGEGLV AFSEHGLMIRWWSLGSVWWEKLSRNLAPVQCTKVIFVPPWEGFSPNSSRSSIIANILGHDSQVNMQEKARDSTYADSLKMLIHNLDLSYRLQWVSERKVL LSRHGQELGTFPL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G11270			Transducin/WD40 repeat-like su...		Potri.003G132900 [exp]	0	1
AT1G24300			GYF domain-containing protein ...		Potri.017G069220 [exp]	1.41	0.9158
AT3G08850		ATRAPTOR1B, RAP...	HEAT repeat ;WD domain, G-beta...		Potri.006G106600 [exp]	1.41	0.8749
AT1G72390			unknown protein		Potri.003G069200 [exp]	5.29	0.8605
AT3G61690			nucleotidyltransferases (.1)		Potri.014G097600 [exp]	6.70	0.8338
					Potri.009G005300 [exp]	7.14	0.8293
AT5G05560		EMB2771, APC1	EMBRYO DEFECTIVE 2771, E3 ubiq...		Potri.008G070300 [exp]	7.41	0.8398	APC1.1
AT3G12590			unknown protein		Potri.008G052700 [exp]	7.48	0.8519
AT5G01400		ESP4	ENHANCED SILENCING PHENOTYPE 4...		Potri.016G116600 [exp]	8.36	0.8549
AT1G48090			calcium-dependent lipid-bindin...		Potri.008G100600 [exp]	10.09	0.8522
AT4G38600		UPL3, KAK	UBIQUITIN-PROTEIN LIGASE 3, KA...		Potri.004G174700 [exp]	10.58	0.8318

Compare expression of checked genes

Potri.003G132900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.