Plant FIBer expression Database

Potri.003G133000 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G41580 467 / 2e-152 RING/U-box superfamily protein (.1)
AT1G08910 330 / 2e-99 EMB3001 zinc ion binding;zinc ion binding (.1)
AT5G60410 59 / 2e-08 ATSIZ1, SIZ1 DNA-binding protein with MIZ/SP-RING zinc finger, PHD-finger and SAP domain (.1.2.3.4.5)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.010G219600
[exp]
68 / 2e-11 AT5G60410 732 / 0.0 DNA-binding protein with MIZ/SP-RING zinc finger, PHD-finger and SAP domain (.1.2.3.4.5)
Potri.008G042300
[exp]
64 / 5e-10 AT5G60410 775 / 0.0 DNA-binding protein with MIZ/SP-RING zinc finger, PHD-finger and SAP domain (.1.2.3.4.5)
Potri.004G210200
[exp]
63 / 7e-10 AT5G60410 1146 / 0.0 DNA-binding protein with MIZ/SP-RING zinc finger, PHD-finger and SAP domain (.1.2.3.4.5)
Potri.009G015000
[exp]
62 / 1e-09 AT5G60410 1148 / 0.0 DNA-binding protein with MIZ/SP-RING zinc finger, PHD-finger and SAP domain (.1.2.3.4.5)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10024682
[exp]
476 / 2e-155 AT5G41580 381 / 8e-121 RING/U-box superfamily protein (.1)
Lus10032307
[exp]
470 / 2e-153 AT5G41580 389 / 4e-124 RING/U-box superfamily protein (.1)
Lus10023344
[exp]
47 / 0.0001 AT5G60410 928 / 0.0 DNA-binding protein with MIZ/SP-RING zinc finger, PHD-finger and SAP domain (.1.2.3.4.5)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0229 RING PF02891 zf-MIZ MIZ/SP-RING zinc finger
Representative CDS sequence
>Potri.003G133000.1 pacid=42785019 polypeptide=Potri.003G133000.1.p locus=Potri.003G133000 ID=Potri.003G133000.1.v4.1 annot-version=v4.1
ATGGTCGGAATGATGGCCGGAACGATGATGCCGCCACCTCAAGTAGCGGAGGGGGTGACGATCAGAGCGGCAGGGCAGCAGATGTCGGCGTCGCTAGCGA
ACTCGTTCAGAGTTCATGCTGTAGCGGAGCGATTATCTTTGCATATACAACCTGGCTTTGACAGTAACCCTACGGAATTCTTTGGCCTTTGCCTCTCTCT
TGCTCGAGGGATTGATTTTGCAGTTGCGAACAATGAGACTCTGCTGAAAGCTCAAGAATTACCTTTTTTATTGAAACAAGTTTGCCAACGTAAAAATGAT
GTTTTCTTGCAAGCAGCTATTATGGTTCTGATGGCTTCCGTTAAGAATGCTTGCATGGTTGGATGGTTTCAAGAGAAAGAAACTCAAGAACTCGTTACTC
TTGCCACCGAGATAGGGAAAGTCTTTTGCACTCCTGGAGATATTAATGCTGGGACAACTGATTCTCTTTCCATTATCCCAACAATCATGTCCAGGTTCTA
TCCACTAATGAAGATGGGTCAGATAATTGTTTCTCTAGAAGTCAAGCCTGGGTTTGGTGCACACGTGATTGATTTTCATATTTCAAAGACGACAAGAAAT
TCGACCGAGGACAAAATATGGTTATTTGTAGCACAGACAGATAATACGGAGACATCTACCTGTATTGTAACTCCGCAAGAAGTGAACTTTCTTTTAAACG
GAAAGGGAGTAGAGAGGAGAACTAATGTTATAATGGATACTGGACCACAGATGCCAACCAACGTTACTGGAATGCTTAAATATGGAACAAATCTTCTTCA
AGCTGTTGGCCAGTTTAAGGGCCATTATGTTATAGCTGTCGCCTTCATGAGTGTGGAACCAAAACCTGAAACTCCTGTCCTACAAGATTACGTTCACCCT
TGTGCAGCTGAACTAGATCCAGATTCTGACATAATTGAGGGACCATCACGTATCTCTCTTAATTGTCCCATAAGCTACACACGAATCAGAACTCCTGTCA
AAGGGCATTCATGCAGACATCTTCAGTGTTTTGATTTTAGTAACTTCGTTGATATAAATACAAGAAGACCATCTTGGCGCTGTCCACATTGTAATCAGCA
TGTCTGCTACACAGATATTCGAGTTGATCAAAACATGGTTAAGGTTCTGAGAGAAGTGGGAGACCATTGCAGTGATGTGATTATCTCCGCTGATGGATCA
TTGAAGGCCATCTCAGAAAGTGACAATAAAGTAGATCAGACACAAGAAAGGACTTTGCATTGTGAGAAGGGCATGCCGGAGCAGGTAGAATCTATGACTT
CCACGAGAGCCCTTCCCATGGTTATGGATCTCACAGTAGATGATGATGAGATAAATGGCGAGGACAATATTGATGCTGAAGACAGGAAACCTTTTCTGGC
TACTCTTCAAAACCATCCTGTCGATACTAATCCAATTCCAACCATGCCATCACAATTGATTAATGCAAATGCACCTAGTCGAAACTTTTCTACTCTAGCG
GATGAATTTTGGTCCAGTCCTTACTGGTCCAGTTCTGCATCAGATGCACAGATGGTGAATGGCTTCTCTGAGCCCTCTACTACCACTTTTATGACATCTC
CTGTGATAACTGATTCTGTTTCTCCTGCACTTAACTGTGATGTTGGGGGTTACGGGAATACCACCACCTCCTCAGTGATGCATAATCAGCTATCTGCTTC
AATTTATTTACAGTCACTGCAGCAAAACTTTGTGAATTCAGTTGCCAATGGTGAGTATGGTACATTGCCACCAATATATCATGTCGACAGGTCTCCAATA
GCAGTTCAGGCCCTCCCAGCTCGACCTCAAACACCAGCTCCACAACAAAGATCAAGAACTCCAAATCCTGCAATTTCCAGTGGGGCCTCCCTTTCTTCTC
ATGGTACTCTACCAGAAGCTGCAAATGGTCTTAGCCCAGTCTCTGGTAATATGGACAGGCAGCAGCAATTTGCAAGATCCCTTAACACGAATTCATCTTC
TTCGCAGAACTGGAATATGCAAGACCATCCATTTATGCATGGTCAATCAGCTCAACAACAGGCTGTTACCCTCCCTAGTTCGAGTCAATTGGCTGGTGCT
CACAGAGCATCCTCACCCAACTTACTATATCAGCAACCTCTTCGAGTGCCCCAATCAAGGAGCCACTCTCCAAATGTAGTCCGATCATCTTTGCCTCTGG
CACCAGCTCAAACCCAGCAAGGGGCTGCACAAGTTGGGGTTGGAAACTCAGCAGGTGCTACAAATAGCCAACAAAGTAGGTTGATGGTTGCTGCTCAGCT
TGCTGCCCAGAGGGCTAGACAGCCACCTTCAGTGCCAGTTCAAATTCAAACATCCGGAGCAGGGGCATCATATCTTACTAGTGCTGATGGGATTAGAGCG
CCAGCAACTGAGCAGAGAGGGAATGCTGGAGGAGCATTGCCAGCAGTTTCTGGCACCGAGGGTCTGGTGGATTTGGCATCAGAACAGAATTGGCGACCAA
CAGGTCGAATGCGTGGAAGTCTCTCAGGTCGAGCTTATTCTGCTGCTCTTAAAGAGTTCATGGTTCAGCCTACCCAACAAACTCAAACCCCAAGACCACC
ACCAAACTTACCCCCATCTCAATCTAGTATGCCACCTCACCTGCAGTTTCTCTTTGCAAGAAATGCCCAAGTTCCACAGGCACAGAGTAGTCCTGTGACT
GGATCTGCCATTTCAAATGGAAGCTCCAGTATTCTACCATAA
AA sequence
>Potri.003G133000.1 pacid=42785019 polypeptide=Potri.003G133000.1.p locus=Potri.003G133000 ID=Potri.003G133000.1.v4.1 annot-version=v4.1
MVGMMAGTMMPPPQVAEGVTIRAAGQQMSASLANSFRVHAVAERLSLHIQPGFDSNPTEFFGLCLSLARGIDFAVANNETLLKAQELPFLLKQVCQRKND
VFLQAAIMVLMASVKNACMVGWFQEKETQELVTLATEIGKVFCTPGDINAGTTDSLSIIPTIMSRFYPLMKMGQIIVSLEVKPGFGAHVIDFHISKTTRN
STEDKIWLFVAQTDNTETSTCIVTPQEVNFLLNGKGVERRTNVIMDTGPQMPTNVTGMLKYGTNLLQAVGQFKGHYVIAVAFMSVEPKPETPVLQDYVHP
CAAELDPDSDIIEGPSRISLNCPISYTRIRTPVKGHSCRHLQCFDFSNFVDINTRRPSWRCPHCNQHVCYTDIRVDQNMVKVLREVGDHCSDVIISADGS
LKAISESDNKVDQTQERTLHCEKGMPEQVESMTSTRALPMVMDLTVDDDEINGEDNIDAEDRKPFLATLQNHPVDTNPIPTMPSQLINANAPSRNFSTLA
DEFWSSPYWSSSASDAQMVNGFSEPSTTTFMTSPVITDSVSPALNCDVGGYGNTTTSSVMHNQLSASIYLQSLQQNFVNSVANGEYGTLPPIYHVDRSPI
AVQALPARPQTPAPQQRSRTPNPAISSGASLSSHGTLPEAANGLSPVSGNMDRQQQFARSLNTNSSSSQNWNMQDHPFMHGQSAQQQAVTLPSSSQLAGA
HRASSPNLLYQQPLRVPQSRSHSPNVVRSSLPLAPAQTQQGAAQVGVGNSAGATNSQQSRLMVAAQLAAQRARQPPSVPVQIQTSGAGASYLTSADGIRA
PATEQRGNAGGALPAVSGTEGLVDLASEQNWRPTGRMRGSLSGRAYSAALKEFMVQPTQQTQTPRPPPNLPPSQSSMPPHLQFLFARNAQVPQAQSSPVT
GSAISNGSSSILP

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G41580 RING/U-box superfamily protein... Potri.003G133000
[exp]
0 1
AT5G22000 RHF2A, CIC7E11 RING-H2 group F2A (.1.2.3) Potri.001G213800
[exp]
1.00 0.9217 RHF2.3
AT1G74260 PUR4 purine biosynthesis 4 (.1) Potri.008G058600
[exp]
2.44 0.9131
AT5G46190 RNA-binding KH domain-containi... Potri.011G082500
[exp]
3.16 0.9082
AT1G44835 YbaK/aminoacyl-tRNA synthetase... Potri.002G085700
[exp]
3.31 0.8919
AT2G31600 unknown protein Potri.017G035200
[exp]
3.46 0.9106
AT3G62470 Pentatricopeptide repeat (PPR)... Potri.014G121400
[exp]
3.46 0.9136
AT3G07740 HXA2, HXA02, HA... homolog of yeast ADA2 2A (.1.2... Potri.014G166300
[exp]
4.89 0.9022
AT2G40360 Transducin/WD40 repeat-like su... Potri.003G009600
[exp]
5.47 0.8934
AT1G52080 AR791 actin binding protein family (... Potri.003G047200
[exp]
10.39 0.8900
AT4G16835 Tetratricopeptide repeat (TPR)... Potri.003G081700
[exp]
11.22 0.8993

Potri.003G133000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.