Plant FIBer expression Database

Potri.003G133100 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G64050 226 / 3e-64 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G098500
[exp]
949 / 0 AT1G64050 217 / 2e-61 unknown protein
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.003G133100.1 pacid=42787114 polypeptide=Potri.003G133100.1.p locus=Potri.003G133100 ID=Potri.003G133100.1.v4.1 annot-version=v4.1
ATGGATGCGTCGGTGGAGCTGAATTATCCGGTGGATGTTGTTGTTTCGGCGGCGGCGGCGGCGGCGAAGAAGAATAAGAGTTTTGTTATGGGATCTGATG
AGGTGTTTGGTAGAGATAATAATAATGACAATAATGATAATATTAGGGTCTCGACGCTTGTTGGTAAAGAAGTTGTTGAGGTCGAGGAGTCGATTTTAGT
TAACCCTAGAGCAGCAGCTGCTTCGATTCAGCATTGCAGCTCTTTGTTTGCTCAAAAAGATGAAACGAGCTCACTCACTGCTTTGGAGTCAATTTCATGG
GAGAAAGTTTTACCTCTGGAACACCGTGAGGATGTTATTAAGAAACCTAGCTCACCTATTGGAGACATTTCTAAACAACTCAATTGCAGTGGCTCAAATG
GTCCTTCATGGATTCCTAGGTCTGAAGAAGTGCAAGTACAAAGAAGAGGAGGAAAAGTGACAAGAAGTAGCAGTGGTTGCTCCAAGAGACCACGGTTATC
TCCATTTGAAGATTCTACTGGACCAGCTGGAGTTGCTGACCCAAAGGATTCTTCTGATAAGCTAGGTTCGCATCCAACCGAGATTGACTGTAATGAAAAA
ACTCAATCAGCGAAAAAAAAGAACAACTTTGGCCGCAAGCGAGGTGATAGGAGACACTCTAAAGTTACATTGAAGACTAAATTTGATTCCTTCTCTGTGA
AGGCAGGTTTGGCGAGCTTTGGTTCAGCTGGTGGTGGGAACAGCTATTTTGGACTATGTGGTTTGAAGACGGATGATCATGACATCACAAAGCTGGTAGA
CCATATATCATTGAATGATGTTCTTGATGGCACTTACGAGTGTCCTAGCTTAGGCAAAGACAAGGGGAAGAAAGCCATAAATGCAACTGAAAATATTCTG
CATTCAGTTGTAAAAGCTTGCTTTATTCTTCATTTCTCCAGGCCTGCTCAGCTCCAGAATTTTGCTGAGACAGATGTCTATTCCAACGAGAAAATGCCTC
CATGCCCATCTTACTCTGTTTCTATTGTTGAAAATGGAGATTCTTCAGCAACTGATATTTCTTCATTTACCAAGGATTCTTGCAACAAGCCTGAAACTCC
TGCTAATTTGCTTGATTTTTCGTTTGACCAACCTAAAGATACTCTGGATCGGTTGGCACTTCCTCCACCCAAGGATCTGGAGTCTCTGCTTCTGGATGCA
ACCAAGCTTGCTGCATCATCAAGGCATGCCCCTGATCCACGACCTGGGAAGCAAACATCTCGCCAGGCTAGCTTGCCAGCTTTTCCCTGGTCACACACTT
TCAGTGGGCAGCACTCCAGAACTAATTCTGACGCGGTTAAGTGTTCACCAAGTAGGAGTACATGCCAAGGTAGATGGGTAAGAATAGGGGACAGTTTCAA
TTCACCTGGGTGTGCCTCTGATACTTTAACAAATTTGGAGTCATGTGCTTATGATGAGACCTTAGTTCCTTCACAAGTAACAAAGTTGGCTGTTCTAGGA
AATAATGTTGACTCATTGAAACCTTGGTGTGGGTGGGGTTTGTCATCCTCACAAGCTTCTATGACATCCCATGTTCTGCTAGAATCTGAAGATGACCTGA
AGTCTCAAGGAAGAGTTGAACGTTGTCCAAGACTGTTGGAGGCTGCTCAAACCTTGTATGACATTGCTACTCACGTGGCAAGGCTAAACCAAGATGGAAT
ATTAAGGCGGCCTAAGGAGCTCTTACAAAAGGCTATGAAAGCTCGCAGGACAAAATCAATCGAGAAACCTGATGATGTATCTGCAGCATCAACTTCATCA
ATGGGGTCTGACCATAAGTCGAGAAGTGGCATGGACCAGATAAAGCCCACAAAGAGGCCTAAACCCTCAACCATTAGGGACAAAAAAGATCTTGATCATA
TCGACAGTGTTAGGAAAGGGCCAATAAATTGGTCTGCTCCAAAATCAAGAAGAGCATCTCCCATCAAATTAATTAGGGACTCCATTGCAGAAAGTAGACA
TTCCGCTGCTTACATCTTAAAGGAAGCATGTATGATGCCTCCTCCACCTGCAAAAGTTCTGAATAGAACTTGCAACGGTCAACAAAAGGTTCGTAAATTG
ATGCAGATGGACTGA
AA sequence
>Potri.003G133100.1 pacid=42787114 polypeptide=Potri.003G133100.1.p locus=Potri.003G133100 ID=Potri.003G133100.1.v4.1 annot-version=v4.1
MDASVELNYPVDVVVSAAAAAAKKNKSFVMGSDEVFGRDNNNDNNDNIRVSTLVGKEVVEVEESILVNPRAAAASIQHCSSLFAQKDETSSLTALESISW
EKVLPLEHREDVIKKPSSPIGDISKQLNCSGSNGPSWIPRSEEVQVQRRGGKVTRSSSGCSKRPRLSPFEDSTGPAGVADPKDSSDKLGSHPTEIDCNEK
TQSAKKKNNFGRKRGDRRHSKVTLKTKFDSFSVKAGLASFGSAGGGNSYFGLCGLKTDDHDITKLVDHISLNDVLDGTYECPSLGKDKGKKAINATENIL
HSVVKACFILHFSRPAQLQNFAETDVYSNEKMPPCPSYSVSIVENGDSSATDISSFTKDSCNKPETPANLLDFSFDQPKDTLDRLALPPPKDLESLLLDA
TKLAASSRHAPDPRPGKQTSRQASLPAFPWSHTFSGQHSRTNSDAVKCSPSRSTCQGRWVRIGDSFNSPGCASDTLTNLESCAYDETLVPSQVTKLAVLG
NNVDSLKPWCGWGLSSSQASMTSHVLLESEDDLKSQGRVERCPRLLEAAQTLYDIATHVARLNQDGILRRPKELLQKAMKARRTKSIEKPDDVSAASTSS
MGSDHKSRSGMDQIKPTKRPKPSTIRDKKDLDHIDSVRKGPINWSAPKSRRASPIKLIRDSIAESRHSAAYILKEACMMPPPPAKVLNRTCNGQQKVRKL
MQMD

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G64050 unknown protein Potri.003G133100
[exp]
0 1
AT4G30935 WRKY ATWRKY32, WRKY3... WRKY DNA-binding protein 32 (.... Potri.006G264000
[exp]
3.46 0.7815
AT1G17820 Putative integral membrane pro... Potri.017G155000
[exp]
4.12 0.8192
AT1G64050 unknown protein Potri.001G098500
[exp]
4.89 0.8084
AT4G24500 hydroxyproline-rich glycoprote... Potri.002G111500
[exp]
8.30 0.8083
AT5G09860 AtTHO1, AtHPR1 nuclear matrix protein-related... Potri.003G194000
[exp]
10.19 0.7892
AT5G38640 NagB/RpiA/CoA transferase-like... Potri.004G103700
[exp]
10.95 0.7908
AT3G60500 G3, CER7 ECERIFERUM 7, 3'-5'-exoribonuc... Potri.001G253200
[exp]
11.61 0.7782
AT3G12360 ITN1 INCREASED TOLERANCE TO NACL, A... Potri.010G212700
[exp]
12.96 0.8022
AT3G15355 UBC25 ,PFU1 PHO2 FAMILY UBIQUITIN CONJUGAT... Potri.011G118800
[exp]
17.46 0.7995
AT2G42450 alpha/beta-Hydrolases superfam... Potri.005G222000
[exp]
19.44 0.7903

Potri.003G133100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.