Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G41590 207 / 2e-67 Protein of unknown function (DUF567) (.1) AT2G38640 145 / 6e-44 Protein of unknown function (DUF567) (.1) AT3G15810 108 / 4e-29 Protein of unknown function (DUF567) (.1) AT1G80120 106 / 3e-28 Protein of unknown function (DUF567) (.1) AT3G14260 79 / 9e-18 Protein of unknown function (DUF567) (.1) AT1G63410 72 / 2e-15 Protein of unknown function (DUF567) (.1) AT1G53900 73 / 9e-15 Eukaryotic translation initiation factor 2B (eIF-2B) family protein (.1) AT1G53880 73 / 9e-15 Eukaryotic translation initiation factor 2B (eIF-2B) family protein (.1) AT1G53870 70 / 2e-14 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) AT1G53890 70 / 2e-14 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2), Protein of unknown function (DUF567) (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G098400 [exp] 341 / 2e-120 AT5G41590 201 / 3e-65 Protein of unknown function (DUF567) (.1) Potri.006G113400 [exp] 141 / 6e-42 AT2G38640 214 / 5e-71 Protein of unknown function (DUF567) (.1) Potri.016G143000 [exp] 137 / 2e-40 AT2G38640 214 / 1e-70 Protein of unknown function (DUF567) (.1) Potri.001G192000 [exp] 110 / 6e-30 AT3G15810 281 / 5e-97 Protein of unknown function (DUF567) (.1) Potri.003G032500 [exp] 98 / 3e-25 AT3G15810 264 / 2e-90 Protein of unknown function (DUF567) (.1) Potri.006G067000 [exp] 98 / 3e-25 AT3G15810 229 / 1e-76 Protein of unknown function (DUF567) (.1) Potri.006G113800 [exp] 92 / 9e-23 AT1G80120 112 / 3e-30 Protein of unknown function (DUF567) (.1) Potri.016G143500 [exp] 87 / 1e-20 AT1G80120 105 / 7e-28 Protein of unknown function (DUF567) (.1) Potri.001G106300 [exp] 80 / 3e-18 AT1G63410 132 / 8e-39 Protein of unknown function (DUF567) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017526 [exp] 218 / 4e-71 AT5G41590 194 / 4e-62 Protein of unknown function (DUF567) (.1) Lus10028756 [exp] 215 / 3e-70 AT5G41590 194 / 7e-62 Protein of unknown function (DUF567) (.1) Lus10007423 [exp] 144 / 9e-43 AT2G38640 187 / 4e-60 Protein of unknown function (DUF567) (.1) Lus10010681 [exp] 140 / 2e-41 AT2G38640 184 / 6e-59 Protein of unknown function (DUF567) (.1) Lus10038097 [exp] 105 / 7e-28 AT3G15810 216 / 8e-71 Protein of unknown function (DUF567) (.1) Lus10016666 [exp] 105 / 9e-28 AT3G15810 265 / 5e-90 Protein of unknown function (DUF567) (.1) Lus10032602 [exp] 87 / 6e-21 AT3G15810 211 / 5e-69 Protein of unknown function (DUF567) (.1) Lus10007118 [exp] 74 / 4e-16 AT3G15810 191 / 4e-62 Protein of unknown function (DUF567) (.1) Lus10006656 [exp] 69 / 3e-14 AT3G15810 127 / 7e-37 Protein of unknown function (DUF567) (.1) Lus10014154 [exp] 62 / 2e-11 AT5G01750 206 / 2e-67 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0395 [poplar] [flax] Tubby_C PF04525 [poplar] [flax] LOR LURP-one-related
Representative CDS sequence Show only first row Show all	>Potri.003G133200.1 pacid=42785353 polypeptide=Potri.003G133200.1.p locus=Potri.003G133200 ID=Potri.003G133200.1.v4.1 annot-version=v4.1 ATGATATTTTTCTTAAAATCTTCGTCAAGATCAGTCCATGATCAAGAACATCATCACGAGCCAGTTGCTGAGGCTGAGGTGGAGACCAGGATTAACGATG GCACGTGCACGTCATTAACAGTGTGGAGGAAGTCACTTTTAATTAGTTGCAATGGATTTACAGTGATTAATTCCTGTGGAGATTTAGTCTATCGCGTTGA TAATTACATTGATCGTCCTGACGAGCTCGTTCTTATGGATGGCTCGGGAAAATCCATCCTCACAATGCGTCGACGCAAGAAGCTTGGAGTGCTAGTACAT AACTGGTTTGTCTATGAAGGTGAAGTGGGTAACTACTGTGCAACAAACAAATTATCAAAGAAGCCAATTTGGTGTGTGAGGAAGAATATTAACATCTTAC AAACCAGTCACAATGTGCTCGCGTATGTTTTTCGAGGATCCACAGATAAAAGACATTCGTTTGTGATCGAAGGTTCTTATACGCGTAGATCATGCAAAGT GATAGGTGGATCAAGAAAGGTTTTGGCAGAGATCAAGAGGAAAGAAGCTATGGTCGAAGGTATTTCTTATGGGGTAGAGGTTTTTGTTTTGAATGTAGAA CCAGGATTTGATCCTGGATTTGCCATGGGTTTGCTTTTGATATTGGATCAAATGTTCCCCTGA
AA sequence Show only first row Show all	>Potri.003G133200.1 pacid=42785353 polypeptide=Potri.003G133200.1.p locus=Potri.003G133200 ID=Potri.003G133200.1.v4.1 annot-version=v4.1 MIFFLKSSSRSVHDQEHHHEPVAEAEVETRINDGTCTSLTVWRKSLLISCNGFTVINSCGDLVYRVDNYIDRPDELVLMDGSGKSILTMRRRKKLGVLVH NWFVYEGEVGNYCATNKLSKKPIWCVRKNINILQTSHNVLAYVFRGSTDKRHSFVIEGSYTRRSCKVIGGSRKVLAEIKRKEAMVEGISYGVEVFVLNVE PGFDPGFAMGLLLILDQMFP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G41590			Protein of unknown function (D...		Potri.003G133200 [exp]	0	1
AT5G38700			unknown protein		Potri.014G123400 [exp]	3.16	0.8326
AT5G01980			RING/U-box superfamily protein...		Potri.006G112100 [exp]	4.47	0.8080
AT5G49230		HRB1	HYPERSENSITIVE TO RED AND BLUE...		Potri.010G000800 [exp]	13.56	0.7703
AT4G24570		DIC2	dicarboxylate carrier 2 (.1)		Potri.017G047800 [exp]	15.16	0.7851
AT5G52020	AP2_ERF		Integrase-type DNA-binding sup...		Potri.001G110500 [exp]	15.68	0.7461	DREB65
AT2G23810		TET8	tetraspanin8 (.1)		Potri.018G099800 [exp]	18.76	0.7559
AT5G23130			Peptidoglycan-binding LysM dom...		Potri.007G071500 [exp]	22.44	0.7347
AT1G14540			Peroxidase superfamily protein...		Potri.008G022264 [exp]	24.79	0.8193
					Potri.006G233301 [exp]	25.09	0.7788
AT5G22950		VPS24.1	SNF7 family protein (.1)		Potri.008G034700 [exp]	27.12	0.6819

Compare expression of checked genes

Potri.003G133200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.