Plant FIBer expression Database

Potri.003G133500 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G64080 147 / 2e-39 MAKR2 MEMBRANE-ASSOCIATED KINASE REGULATOR 2, unknown protein
AT5G52870 61 / 7e-10 MAKR5 MEMBRANE-ASSOCIATED KINASE REGULATOR 5, unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G098000
[exp]
360 / 2e-120 AT1G64080 145 / 8e-39 MEMBRANE-ASSOCIATED KINASE REGULATOR 2, unknown protein
Potri.015G027500
[exp]
122 / 6e-31 AT5G52870 90 / 4e-20 MEMBRANE-ASSOCIATED KINASE REGULATOR 5, unknown protein
Potri.012G035700
[exp]
122 / 8e-31 AT5G52870 115 / 2e-29 MEMBRANE-ASSOCIATED KINASE REGULATOR 5, unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10017532
[exp]
205 / 2e-60 AT1G64080 175 / 1e-49 MEMBRANE-ASSOCIATED KINASE REGULATOR 2, unknown protein
Lus10028754
[exp]
197 / 9e-58 AT1G64080 185 / 1e-53 MEMBRANE-ASSOCIATED KINASE REGULATOR 2, unknown protein
PFAM info
Representative CDS sequence
>Potri.003G133500.1 pacid=42785674 polypeptide=Potri.003G133500.1.p locus=Potri.003G133500 ID=Potri.003G133500.1.v4.1 annot-version=v4.1
ATGGAAGCTTTCAGCTTGCTCAAGTACTGGAGAGGTGGTGGTATTGCTGTTAATGGTGGAGCGCGCGGTGGAGATGGTAATTACAACTCACGCGCCACCA
CAATTGTCTCTGCTGTGTCTCCAGACAGAGTGGAAACTGATGATGAGAATGATGACGATGATGGGCCTTTTTTTGACTTGGAGTTTGCAGTTCCTGACGA
AGAAGAAGAGGAAGGAGCAGAAAGCAAAGATGAGATAAAAGAAAACAATGGGGCTGGTTCTGATGAGGAAAACGATGCTGCTGACACTTCTGATGATGAT
GATGATGATGGGATGGACGAAGAGAGGGAGTTCAATTTCACTCTCTCTTCGGCGTCTAGCAATGACAGGAGGGATCAAAATCTTGCTCTTTCTCCTTCCG
ATGATTTGTTTTTCAAAGGAAGGCTTGTGCCGATTGAGTCATCTTCGCTTGAGCTGAACTCCAAATCCTCTCAGTTTTCGGTGTCATTGCAAAAATCTGC
TACAAAATTTCGCGTCTTCATGTCGGGATTAAAGAGAAAACCAAACACTACAACAACAAATGAAAAGACAGAAGCTAACGTGCCGACATTAGCTTCTGCT
GCTCCTAAACAACAAGGCGAGAAAGATGAGGAAAATGGCAAGCAAAGTAAGTTTTTTACCGTGAAATTTAAGGTCGAGGAAGTACCTATAATGTCTTTGT
TCACCAGGGAGAATAGCAAAAGCATCAAGTCATCACAGCAGAAGCAGAGTTCTGCAGAGGAATCAACTGCTTCTGCTGCCGGTGCTGCTTTTTCAGATGA
TAAGCAGAAGTTTTCAAAGGATGTAATGCAGAAGTATTTAAAGAAAGTTAAGCCTCTTTATATCCGTGTGTCTAAACGGTATGGCGAGAAGCTGAAATTC
TCCGGGCAATTAAGTTTCGGCTCCGGACCAAAAACATCCGCTCCTCCGTCACCATCCACGGTGGCCCAGAAACCAATAACGGCTGATAATGGGGGAAAGG
AGAAGGAAAGCGCGGAAGCTCCGACGGTAGCGGTGAGTAGTATGAAGGGTCCTAAACAGGGGAATTTGCCTGCTGGGTTGAGAGTTGTGTGTAAGCATTT
AGGGAAAAGCAGATCAGCTTCATCGGCGGCGGTGGCGGCGGCTCCGCCGGTTCCTGTTTTGTCAAATAGGAGAGATGATTCGCTGTTGCAGCAACAGGAT
GGGATCCAGAGTGCTATTCTTCATTGCAAGAGATCATTTAATGCATCTCGAGATTCCGATTCCTCCGTGCTATCAAGGTCAGCGAGTGATCCATCCCATG
AGAAATCAATGGAAATAATGGCGAGGAAGCCATCAGACCATGATGGGAAAGGTTCTTCTGTGGACCCAAAAAGGGCGGGAAAATGA
AA sequence
>Potri.003G133500.1 pacid=42785674 polypeptide=Potri.003G133500.1.p locus=Potri.003G133500 ID=Potri.003G133500.1.v4.1 annot-version=v4.1
MEAFSLLKYWRGGGIAVNGGARGGDGNYNSRATTIVSAVSPDRVETDDENDDDDGPFFDLEFAVPDEEEEEGAESKDEIKENNGAGSDEENDAADTSDDD
DDDGMDEEREFNFTLSSASSNDRRDQNLALSPSDDLFFKGRLVPIESSSLELNSKSSQFSVSLQKSATKFRVFMSGLKRKPNTTTTNEKTEANVPTLASA
APKQQGEKDEENGKQSKFFTVKFKVEEVPIMSLFTRENSKSIKSSQQKQSSAEESTASAAGAAFSDDKQKFSKDVMQKYLKKVKPLYIRVSKRYGEKLKF
SGQLSFGSGPKTSAPPSPSTVAQKPITADNGGKEKESAEAPTVAVSSMKGPKQGNLPAGLRVVCKHLGKSRSASSAAVAAAPPVPVLSNRRDDSLLQQQD
GIQSAILHCKRSFNASRDSDSSVLSRSASDPSHEKSMEIMARKPSDHDGKGSSVDPKRAGK

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G64080 MAKR2 MEMBRANE-ASSOCIATED KINASE REG... Potri.003G133500
[exp]
0 1
AT5G07620 Protein kinase superfamily pro... Potri.004G232800
[exp]
8.36 0.7867
AT3G11590 unknown protein Potri.004G199500
[exp]
12.24 0.7732
AT2G46550 unknown protein Potri.014G100300
[exp]
20.14 0.7702
AT3G05480 ATRAD9 cell cycle checkpoint control ... Potri.013G017500
[exp]
20.97 0.7759
AT2G39450 ATMTP11 Cation efflux family protein (... Potri.010G211300
[exp]
22.27 0.7666 PtrMTP11.1
AT1G61250 SC3 secretory carrier 3 (.1.2) Potri.004G036600
[exp]
23.49 0.7945
AT4G30420 nodulin MtN21 /EamA-like trans... Potri.018G099500
[exp]
24.49 0.7477
AT3G49500 SDE1, SGS2, RDR... SUPPRESSOR OF GENE SILENCING 2... Potri.006G253500
[exp]
26.64 0.6826 RDR6.1
AT4G15920 SWEET17, AtSWEE... Nodulin MtN3 family protein (.... Potri.013G013800
[exp]
30.88 0.7599
AT4G39630 unknown protein Potri.005G082500
[exp]
31.81 0.7925

Potri.003G133500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.