Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G64110 1145 / 0 DAA1 DUO1-activated ATPase 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) AT4G28000 1077 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G52882 1037 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT4G02480 481 / 5e-153 AAA-type ATPase family protein (.1) AT1G02890 469 / 9e-149 AAA-type ATPase family protein (.1.2) AT4G24860 413 / 7e-129 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G19740 383 / 1e-118 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G50140 375 / 1e-115 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT1G62130 351 / 3e-106 AAA-type ATPase family protein (.1) AT5G53540 272 / 3e-83 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G097600 [exp] 1444 / 0 AT1G64110 1159 / 0.0 DUO1-activated ATPase 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Potri.012G035400 [exp] 1115 / 0 AT5G52882 1137 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.015G026900 [exp] 1090 / 0 AT5G52882 1146 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.014G131000 [exp] 472 / 7e-150 AT1G02890 1432 / 0.0 AAA-type ATPase family protein (.1.2) Potri.012G096300 [exp] 470 / 6e-149 AT4G02480 1153 / 0.0 AAA-type ATPase family protein (.1) Potri.002G205900 [exp] 457 / 2e-144 AT1G02890 1445 / 0.0 AAA-type ATPase family protein (.1.2) Potri.015G094100 [exp] 457 / 4e-144 AT4G02480 1128 / 0.0 AAA-type ATPase family protein (.1) Potri.007G069800 [exp] 357 / 2e-108 AT1G50140 1215 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.005G093300 [exp] 356 / 2e-108 AT3G19740 1209 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024692 [exp] 1164 / 0 AT1G64110 1176 / 0.0 DUO1-activated ATPase 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Lus10028752 [exp] 1144 / 0 AT1G64110 1165 / 0.0 DUO1-activated ATPase 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Lus10017535 [exp] 1138 / 0 AT1G64110 1157 / 0.0 DUO1-activated ATPase 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Lus10027551 [exp] 1053 / 0 AT5G52882 1136 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10039309 [exp] 1049 / 0 AT5G52882 1140 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10010282 [exp] 450 / 2e-141 AT4G02480 1408 / 0.0 AAA-type ATPase family protein (.1) Lus10036347 [exp] 448 / 1e-140 AT4G02480 1395 / 0.0 AAA-type ATPase family protein (.1) Lus10010204 [exp] 383 / 2e-118 AT3G19740 1242 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10017405 [exp] 374 / 1e-114 AT3G19740 1223 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10013429 [exp] 352 / 5e-106 AT1G50140 1151 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF05496 [poplar] [flax] RuvB_N Holliday junction DNA helicase RuvB P-loop domain
Representative CDS sequence Show only first row Show all	>Potri.003G133700.3 pacid=42786863 polypeptide=Potri.003G133700.3.p locus=Potri.003G133700 ID=Potri.003G133700.3.v4.1 annot-version=v4.1 ATGATAATTATGGAGCAGAAGCATATAGTGTTATCGGCGTTGAGTGTAGGGGTAGGGGTTGGAATAGGATTGGCGTCAGGAAAAACAGTGAGTAAATGGA GAGGAGACGCCGCTTCGGCATCCAAAGGTATAAATTCGGAGACGATGGAACAAGAATTGCTCAAGCAAGTCATTGATGGAAGAGAAAGCGGGGTCACCTT CGATCAATTCCCCTACTACCTCAGCGAGCAGACCAGAGTATTACTAACAAGTGCTGCCTATGTCTACTTGAAGCATGCTGAAGCTTCCAAGTATACAAGG AACCTTTCACCAGCAAGTCGGACCATTTTGCTTTCAGGACCTGCAGAACCTTACCAGCAAATGCTTGCCAAAGCTTTGGCACATTTCTTTGAAGCCAAAT TGCTGCTGTTAGATGCAACCGACTTTTCTCTTAAGATTCAGAGCAAATACGGTGCAAACAAAGAATCTTTGTTCAGAAGATCCACTTCAGAGACAACACT AGAGCGATTGTCTGGTTTCTTTGGATCATTTTCAATCCTTCCACAAAAGGAAGAGCCTAAGGGCACACTGCGTAGGCAATCCAGTGGTGTGGATATTCCG TCAAGGGGGCTAGACAGTTCTCATAATCCTCCCAAGATAAGAAGAAATTCCTCTGCTGCAGCTAATCTAAGCAATGAGATTACACAAAGCACTCCTGCAA ATACAGCTCCTTCGAGGCATATGAGCAGTTGGTCTTTTGACGAGAAGCTTCTTGTACAGTCTCTTTACAAGGTTCTGGTTTATGTGTCTAAAACTAGTCC CATTGTGCTGTACCTGAGGGATGTAGAGAAGATCTCATTCAGATCGAACAGGATATACAATTTGTTCCAGAAGATGTTCGATAAACTGTCTGGATCAGTA CTGATCCTTGGTTCACGAGTAGTGAATCTGAGTAATGACTCCAGAGAGGTGGATGAGAGGCTTACTGCTCTTTTCCCGTACAACATTGAGATCAAGCCTC CTGAAGATGAAACCCATCTTGTCAGCTTTAAAAACCGGCTGGAGGAGGATATGAAGATGATCCAGGTTCGCGATAATAGAAATCACGTCATGGAAGTACT TTCAGCCAATGATCTTGATTGTGATGATTTGGATTCAGTCTGTGTGGCTGACACAATGGCTCTCAGTAACTACATAGAAGAGATTGTGTTGTCTGCAATC TCTTATCATTTAATGAACAACAAGTATCCGGAGTACAGGAATGGAAAACTTTTTGTGTCATCCAAAAGTTTATCACATGGATTGAGTATATTCCAGGAGA GCAAGTCCACTGGAAAAGATTCATTGAAATTGGAAGCCAAGGCAGAAACATCGAAGGAAAAAGGGAAGAATGAGACTGTTACTATGAAGCCAGGAACAAA AGCTGAAGGTGTAAATGCTGAAAATAAAAGTGAAGTAGAGAAAAAAGCTTCAGCGGTCAAGGCAGATGGTGAAGATTCCTTATCAGCATCAAAAGCTCGG GGAGTCCCTCCTGACAATGAATTTGAAAAACGCATAAGGCCAGAGGTTATACCATCAAATGAGATTAATGTAACGTTTACTGACATTGGTGCCTTGGAAG AGACCAAAGAATCTCTCCAGGAACTAGTGATGCTTCCTCTTCGAAGACCAGACCTCTTTAAAGGAGGATTGCTAAAGCCTTGCAGAGGAATTTTGCTGTT TGGTCCTCCTGGCACTGGGAAGACAATGCTTGCCAAAGCTATTGCTAAGGAAGCTGGAGCGAGCTTCATTAATGTATCCATGTCAACCATCACTTCCAAA TGGTTTGGTGAAGATGAGAAGAATGTCCGAGCTTTGTTCACACTGGCAGCAAAGGTTTCCCCAACTATTATATTTGTAGATGAGGTTGATAGCATGCTCG GGCAGCGAAGTAGAGCTGGAGAGCATGAAGCAATGAGGAAGATAAAGAATGAGTTCATGACTCATTGGGATGGACTTTTGACACATCAGGGTCAGCGCAT ACTTGTGCTCGCTGCAACCAACCGGCCATTTGACCTTGATGAAGCAATGATTAGGCGTTTTGAGCGGAGAATTATGGTGGGGCTTCCTTCCTCGGAGCAC AGGGAAAGCATTTTGAAAACTCTCTTGGGAAAAGAAAAGGAAGAAGGAATAGATTTCAAGAAGCTTGCTACTATGACAGTAGGATATTCAGGAAGTGATC TTAAGAACTTATGCACTACTGCTGCCTATCGGCCTGTCAGGGAGTTGATACAGCAAGAAATATTAAAGGATTTAGTGAAAAACCAAAGAGCTGAGGCAGC ACAAAAATCAGGGGAAGCTACTGATACAAAAGGAGAAGAAAAGGAGGAGAGAGTCATTAACCTCAGACCACTAACTATGGAAGACTTTGAGCTTGCAAAG AATCAGGTTGCTGCTAGCTTTGCAGCAGAAGGAGCTTCAATGAACGAATTGAAGCAGTGGAATGAATTGTATGGGGAAGGAGGTTCAAGGAAAAAGCAGC AGTTGGCCTATTTCTTATAA
AA sequence Show only first row Show all	>Potri.003G133700.3 pacid=42786863 polypeptide=Potri.003G133700.3.p locus=Potri.003G133700 ID=Potri.003G133700.3.v4.1 annot-version=v4.1 MIIMEQKHIVLSALSVGVGVGIGLASGKTVSKWRGDAASASKGINSETMEQELLKQVIDGRESGVTFDQFPYYLSEQTRVLLTSAAYVYLKHAEASKYTR NLSPASRTILLSGPAEPYQQMLAKALAHFFEAKLLLLDATDFSLKIQSKYGANKESLFRRSTSETTLERLSGFFGSFSILPQKEEPKGTLRRQSSGVDIP SRGLDSSHNPPKIRRNSSAAANLSNEITQSTPANTAPSRHMSSWSFDEKLLVQSLYKVLVYVSKTSPIVLYLRDVEKISFRSNRIYNLFQKMFDKLSGSV LILGSRVVNLSNDSREVDERLTALFPYNIEIKPPEDETHLVSFKNRLEEDMKMIQVRDNRNHVMEVLSANDLDCDDLDSVCVADTMALSNYIEEIVLSAI SYHLMNNKYPEYRNGKLFVSSKSLSHGLSIFQESKSTGKDSLKLEAKAETSKEKGKNETVTMKPGTKAEGVNAENKSEVEKKASAVKADGEDSLSASKAR GVPPDNEFEKRIRPEVIPSNEINVTFTDIGALEETKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIAKEAGASFINVSMSTITSK WFGEDEKNVRALFTLAAKVSPTIIFVDEVDSMLGQRSRAGEHEAMRKIKNEFMTHWDGLLTHQGQRILVLAATNRPFDLDEAMIRRFERRIMVGLPSSEH RESILKTLLGKEKEEGIDFKKLATMTVGYSGSDLKNLCTTAAYRPVRELIQQEILKDLVKNQRAEAAQKSGEATDTKGEEKEERVINLRPLTMEDFELAK NQVAASFAAEGASMNELKQWNELYGEGGSRKKQQLAYFL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G64110		DAA1	DUO1-activated ATPase 1, P-loo...		Potri.003G133700 [exp]	0	1
AT5G58140		NPL1, PHOT2	NON PHOTOTROPIC HYPOCOTYL 1-LI...		Potri.009G170640 [exp]	1.41	0.9679
AT3G10130			SOUL heme-binding family prote...		Potri.016G098500 [exp]	2.82	0.9654
AT5G05740		ATEGY2	ethylene-dependent gravitropis...		Potri.008G066500 [exp]	8.83	0.9566
					Potri.003G135200 [exp]	11.48	0.9409
AT4G22890		PGR5-LIKEA, PGR...	PGR5-LIKE A (.1.2.3.4.5)		Potri.001G113000 [exp]	12.64	0.9420
AT1G76430		PHT1;9	phosphate transporter 1;9 (.1)		Potri.002G005500 [exp]	12.68	0.9395	PtrPHT1-9
AT4G29990			Leucine-rich repeat transmembr...		Potri.019G094200 [exp]	13.03	0.9349
AT4G09660			unknown protein		Potri.014G176225 [exp]	14.86	0.9317
AT5G22800		EMB86, EMB263, ...	EMBRYO DEFECTIVE 86, EMBRYO DE...		Potri.009G141300 [exp]	14.96	0.9455
AT1G48520		GATB	GLU-ADT subunit B (.1.2.3)		Potri.008G172700 [exp]	15.58	0.9371	GATB.1

Compare expression of checked genes

Potri.003G133700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.