Plant FIBer expression Database

Potri.003G133800 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G60750 461 / 6e-164 CAAX amino terminal protease family protein (.1)
AT1G14270 87 / 3e-19 CAAX amino terminal protease family protein (.1.2.3.4)
AT2G20725 67 / 2e-12 CAAX amino terminal protease family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G097500
[exp]
639 / 0 AT5G60750 460 / 2e-163 CAAX amino terminal protease family protein (.1)
Potri.008G147600
[exp]
87 / 3e-19 AT1G14270 362 / 1e-124 CAAX amino terminal protease family protein (.1.2.3.4)
Potri.019G101100
[exp]
64 / 2e-11 AT2G20725 224 / 5e-72 CAAX amino terminal protease family protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10017536
[exp]
512 / 0 AT5G60750 422 / 2e-148 CAAX amino terminal protease family protein (.1)
Lus10028751
[exp]
511 / 0 AT5G60750 429 / 4e-151 CAAX amino terminal protease family protein (.1)
Lus10024708
[exp]
506 / 5e-180 AT5G60750 444 / 2e-155 CAAX amino terminal protease family protein (.1)
Lus10032326
[exp]
459 / 9e-162 AT5G60750 402 / 1e-139 CAAX amino terminal protease family protein (.1)
Lus10036748
[exp]
85 / 4e-18 AT1G14270 400 / 6e-140 CAAX amino terminal protease family protein (.1.2.3.4)
Lus10037179
[exp]
79 / 2e-16 AT1G14270 347 / 8e-121 CAAX amino terminal protease family protein (.1.2.3.4)
Lus10018585
[exp]
56 / 2e-08 AT2G20725 235 / 3e-76 CAAX amino terminal protease family protein (.1)
Lus10039818
[exp]
48 / 3e-06 AT2G20725 210 / 5e-68 CAAX amino terminal protease family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0472 Peptidase_U PF02517 CPBP CPBP intramembrane metalloprotease
Representative CDS sequence
>Potri.003G133800.1 pacid=42785204 polypeptide=Potri.003G133800.1.p locus=Potri.003G133800 ID=Potri.003G133800.1.v4.1 annot-version=v4.1
ATGTTGAGCTTATCTCAACAGCCCATTCTTACCCCTTCAATACCCAAACTTAGGGTTTTTAATCGACCTCGAAATTCTTCTCTTTTTGCAGCGAGGAATA
ATCGGATCTTTGAGTCCAATTCAAAGCTACCAAAGCATAAATGGAGAGTTTCATGTTTTAGAAATGAGGAAATTTCTCAGGTAAATTCCGGGTCTGATAG
TGTCGAACGTTACGTACCTGAGGAATTGGTGAAGCCTGAGTTGGATAATTCTACGAATGTTAAAAGAGATTGGATATCGAGTCTTCGAGAGGCTGCTAAT
GTAGTGTTGAGGGCATTTGGGAGCTCGTGGACTGTACCATGGACAGCAGAGACCATAGTTCAGGTGATGCTTCTCTGGGTTGTCTCATTCTGGTTCATAG
GGTCCTGGTTGATTCCTTTTGCGGCACACATTGCAGGTTTCAACAAGGAATCCCTAACATTTAGAGGTCAAGCTTTGTTCAGCCTTGTGACTGATGTGAC
TGAAGGCCTTGCTGGAATTGCAATCCTTCATTGTTGCCTGTCTCGATTTCATCCCCTTTCATCTGATTGGTTTAGATTCAGACTGAAAGGGAACTGGCTG
TTTGACGTTGCTCTTGGCTGCCTCATGTTTCCACTAGTTAACCGGCTGTCACAGTTCAATCTTAGCCTATTGCCTATTCTGCCTTCTACACCGGTCACTC
TCTCAAGTGTTGAGCAGTCAATTGCAGCACGGGATCCGGTGGCAATGGTACTGTATGCAATAGTGGTTTCAGTGTGTGCTCCTGTGTGGGAGGAGATAGT
CTTCCGTGGTTTCCTCCTCCCATCCTTGACTCGGTACATGCCAGTCTGGTGTGCAATATTGGTGAGTTCGGTTGCCTTTGCACTAGTGCATTTTAATGTA
CAGAGAATGCTACCACTTATTTTTCTTGGGGTGGTTATGGGTGTTATATTTGCACGGTCACGAAATTTATTGCCATCTATGCTTCTTCATAGCCTCTGGA
ATGGCTTTGTATTCTTAGATTTAATGAAATAG
AA sequence
>Potri.003G133800.1 pacid=42785204 polypeptide=Potri.003G133800.1.p locus=Potri.003G133800 ID=Potri.003G133800.1.v4.1 annot-version=v4.1
MLSLSQQPILTPSIPKLRVFNRPRNSSLFAARNNRIFESNSKLPKHKWRVSCFRNEEISQVNSGSDSVERYVPEELVKPELDNSTNVKRDWISSLREAAN
VVLRAFGSSWTVPWTAETIVQVMLLWVVSFWFIGSWLIPFAAHIAGFNKESLTFRGQALFSLVTDVTEGLAGIAILHCCLSRFHPLSSDWFRFRLKGNWL
FDVALGCLMFPLVNRLSQFNLSLLPILPSTPVTLSSVEQSIAARDPVAMVLYAIVVSVCAPVWEEIVFRGFLLPSLTRYMPVWCAILVSSVAFALVHFNV
QRMLPLIFLGVVMGVIFARSRNLLPSMLLHSLWNGFVFLDLMK

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G60750 CAAX amino terminal protease f... Potri.003G133800
[exp]
0 1
AT1G04985 unknown protein Potri.014G159600
[exp]
3.46 0.9275
AT3G10230 AtLCY, LYC lycopene cyclase (.1.2) Potri.009G159800
[exp]
6.92 0.9265
AT1G48450 Protein of unknown function (D... Potri.015G031200
[exp]
8.24 0.9276
AT1G10500 ATCPISCA chloroplast-localized ISCA-lik... Potri.007G079600
[exp]
8.36 0.9295
AT3G06780 glycine-rich protein (.1) Potri.008G211000
[exp]
9.38 0.8857
AT3G48070 RING/U-box superfamily protein... Potri.015G069400
[exp]
12.40 0.9203
AT5G42800 M318, TT3, DFR dihydroflavonol 4-reductase (.... Potri.001G093300
[exp]
16.61 0.9203
AT1G79510 Uncharacterized conserved prot... Potri.010G173000
[exp]
17.20 0.9162
AT1G71180 6-phosphogluconate dehydrogena... Potri.001G211500
[exp]
19.33 0.8987
AT2G43090 Aconitase/3-isopropylmalate de... Potri.003G107800
[exp]
19.97 0.8998

Potri.003G133800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.