Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G64140 691 / 0 unknown protein AT5G09670 425 / 9e-142 loricrin-related (.1.2) AT5G64550 421 / 8e-139 loricrin-related (.1) AT4G12020 237 / 4e-66 WRKY MEKK4, MAPKKK11, ATWRKY19, WRKY19 MAPK/ERK KINASE KINASE 4, MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 11, protein kinase family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G097200 [exp] 1065 / 0 AT1G64140 718 / 0.0 unknown protein Potri.001G206600 [exp] 447 / 6e-149 AT5G64550 675 / 0.0 loricrin-related (.1) Potri.003G023300 [exp] 442 / 3e-147 AT5G64550 716 / 0.0 loricrin-related (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032329 [exp] 813 / 0 AT1G64140 690 / 0.0 unknown protein Lus10019307 [exp] 448 / 9e-150 AT5G64550 639 / 0.0 loricrin-related (.1) Lus10011515 [exp] 438 / 5e-146 AT5G64550 652 / 0.0 loricrin-related (.1) Lus10024712 [exp] 355 / 1e-118 AT1G64140 298 / 2e-97 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.003G134200.3 pacid=42785372 polypeptide=Potri.003G134200.3.p locus=Potri.003G134200 ID=Potri.003G134200.3.v4.1 annot-version=v4.1 ATGGATAACAGGATCTGGAACCTGGGTTTCGCCGCTGATTACCCTTCAAATGCATTCAAGATTTTGGGCAGTTCGTTGTCTGTTGGAGCAGCTGGCACCA AATACAGTGCTGATACTGTCTTGCGCCTTGACTCCCCAGGATCTTCAGTCCCATCTGGCTTTTCTTCGAAGGGAATTAAGCGGAAGTGGAATTTGATTAA TGGATCCATGGGCCAAAATGTTGGTTCTTCACTATCTCTTGGGCTTGGCCGCTCCTCAAGCTCTTCAGATAGCAAGGGGAGTTCAGCAACTGCTTGCACA TCAATGTCTTCTGCCATAGAAACTGATGAAGAGTCCTCGATGGATCTTGACTTCTCTCTCCATCTTGGCCATGAGAAGATGTTGAGCCCAAAGAAGCCTG CTCGTTCATATCTCAAGGGAATGGAGCCCAAGGTTGACTTGGAGTTGGGTCTCTCCACTGGTCCTTCTGAATCTGATGTTACGAGCATCCATCCACCCTC AAGTTCACTTGAATTTGCCTTTGATATGCCATTGGCTATGGGTGGAGCATCAAATGTGAATGAAGGATCGACATCATGTAGTTGGAAATCAGGGATTACA TTGCTTCCATTGCAGATTTCCTCCAACAAAGAAGCTAGCTTCTTCTTCAACCAGATTCCAAGAACTAGGGATCCTACTCCCAGTTTTCCAGACCACTCAT CTAGTGTGATAACAACACCAAAAAGTTCAGTCACCTGTACTTCTGGGATAAGTCAGCAGCAACAGCCATATCAACGCGGCACTAGTTTAAAGTTATGTCA GGTTGAGGGTTGTGGAAAGGGTGCCAGAGGTGCTTCTGGCCGTTGTATTTCACATGGCGGAGGCCGAAGGTGTCGGAAAGCTGGTTGTCTCAAGGGAGCT GAGGGCCGAACAGTGTACTGCAAGGCCCATGGGGGTGGTCGCCGCTGTGAATTCCTTGGTTGCACAAAAAGTGCAGAAGGTCGCACAGATTTTTGTATTG CGCATGGTGGTGGCCGGAGATGCAGTCATGAGGGCTGCACTCGAGCTGCCAGGGGAAAATCTGGTCTGTGCATCCGACATGGTGGTGGTAAGAGGTGCCA GAAAGAAAATTGCACGAAGAGTGCAGAAGGCCTCTCTGGTCTTTGCATTTCGCATGGAGGTGGTCGTCGATGCCAATTCTTAGGATGCACCAAAGGAGCA CAAGGGAGCACTATGTTCTGCAAGGCACACGGTGGGGGGAAACGCTGCACGGCTCCAGGATGCAGCAAGGGCGCTGAAGGGAGCACACCTTTTTGTAAAG GCCATGGAGGAGGGAAAAGATGTGCGTTCCAAGGTGGTGGGGTTTGTACTAAGAGTGTACATGGAGGGACCAACTTCTGTGTGGCACATGGAGGTGGAAA GAGGTGTGCTGCACCTGAGTGCACAAAAAGTGCAAGAGGACGGACACAATTTTGTGTCCGCCATGGTGGTGGAAAAAGGTGCAAGTTTGAAGGATGTGGC AAAAGTGCACAAGGCAGCACCGATTACTGCAAGGCGCATGGTGGAGGAAAGAGATGCTCTTGGGGTCATTCTGGATCAGAATATGGTAATCAACCTACTG GTCCTTGTAACTCATTCGCTAGGGGTAAGACAGGTCTCTGTGCACTTCACAGTGGCTTGGTGCTGGACAAGAGGGTTCATGGTGGTGTCACCTTGGGACC TATGGTCCAGGACCCCAAGATTAGCCAGTCTGAGAAGATGAAAGAAGTTGTCACTGCAGAGGACATGACCATTGATATTGTGAAGATGGGTACTAGTGCA GCGGCTTCAACAGGCAGAACTACTACTGATTTGAAACATTTTGGAGACTCAAGCACTCCTATATCTGTAAGAGAAGCAGGTCTCTCATCAATTCCGGTTT TTGTATCAGAAGGCAGGGTGCGTGGTGGCAGTTTGATGGCAATGATTGCTGGTGGTTTTGGTGTTGGCTCAAGCAGCAACCAAGTTGTAGCTGGAGATCC ATCAGAGCCTAAAAAATCATATGTGATTCATCAGAACTGGATGTAA
AA sequence Show only first row Show all	>Potri.003G134200.3 pacid=42785372 polypeptide=Potri.003G134200.3.p locus=Potri.003G134200 ID=Potri.003G134200.3.v4.1 annot-version=v4.1 MDNRIWNLGFAADYPSNAFKILGSSLSVGAAGTKYSADTVLRLDSPGSSVPSGFSSKGIKRKWNLINGSMGQNVGSSLSLGLGRSSSSSDSKGSSATACT SMSSAIETDEESSMDLDFSLHLGHEKMLSPKKPARSYLKGMEPKVDLELGLSTGPSESDVTSIHPPSSSLEFAFDMPLAMGGASNVNEGSTSCSWKSGIT LLPLQISSNKEASFFFNQIPRTRDPTPSFPDHSSSVITTPKSSVTCTSGISQQQQPYQRGTSLKLCQVEGCGKGARGASGRCISHGGGRRCRKAGCLKGA EGRTVYCKAHGGGRRCEFLGCTKSAEGRTDFCIAHGGGRRCSHEGCTRAARGKSGLCIRHGGGKRCQKENCTKSAEGLSGLCISHGGGRRCQFLGCTKGA QGSTMFCKAHGGGKRCTAPGCSKGAEGSTPFCKGHGGGKRCAFQGGGVCTKSVHGGTNFCVAHGGGKRCAAPECTKSARGRTQFCVRHGGGKRCKFEGCG KSAQGSTDYCKAHGGGKRCSWGHSGSEYGNQPTGPCNSFARGKTGLCALHSGLVLDKRVHGGVTLGPMVQDPKISQSEKMKEVVTAEDMTIDIVKMGTSA AASTGRTTTDLKHFGDSSTPISVREAGLSSIPVFVSEGRVRGGSLMAMIAGGFGVGSSSNQVVAGDPSEPKKSYVIHQNWM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G64140			unknown protein		Potri.003G134200 [exp]	0	1
AT4G21865			unknown protein		Potri.010G065666 [exp]	1.00	0.8513
AT2G17840		ERD7	EARLY-RESPONSIVE TO DEHYDRATIO...		Potri.009G133500 [exp]	8.83	0.8207
AT5G60790		ABCF1, ATGCN1	ARABIDOPSIS THALIANA GENERAL C...		Potri.009G007800 [exp]	10.95	0.7814	Pt-PNATH.1
AT2G17650			AMP-dependent synthetase and l...		Potri.005G099500 [exp]	12.00	0.8196
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Potri.011G121200 [exp]	16.30	0.8340
AT3G02890			RING/FYVE/PHD zinc finger supe...		Potri.003G091000 [exp]	16.88	0.7758
AT1G08570		ACHT4	atypical CYS HIS rich thiored...		Potri.013G061200 [exp]	18.76	0.7500
AT2G31130			unknown protein		Potri.019G089900 [exp]	20.39	0.7634
AT3G58040		SINAT2	seven in absentia of Arabidops...		Potri.001G010500 [exp]	20.90	0.7700
AT2G31945			unknown protein		Potri.009G024300 [exp]	28.49	0.7966

Compare expression of checked genes

Potri.003G134200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.