Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G64150 344 / 6e-117 Uncharacterized protein family (UPF0016) (.1) AT4G13590 163 / 1e-46 Uncharacterized protein family (UPF0016) (.1), Uncharacterized protein family (UPF0016) (.2) AT5G36290 104 / 2e-25 Uncharacterized protein family (UPF0016) (.1), Uncharacterized protein family (UPF0016) (.2) AT1G68650 92 / 3e-21 Uncharacterized protein family (UPF0016) (.1) AT1G25520 82 / 6e-18 Uncharacterized protein family (UPF0016) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G174600 [exp] 164 / 5e-47 AT4G13590 369 / 2e-127 Uncharacterized protein family (UPF0016) (.1), Uncharacterized protein family (UPF0016) (.2) Potri.001G053600 [exp] 156 / 3e-44 AT4G13590 417 / 5e-146 Uncharacterized protein family (UPF0016) (.1), Uncharacterized protein family (UPF0016) (.2) Potri.013G086700 [exp] 100 / 3e-24 AT5G36290 322 / 8e-111 Uncharacterized protein family (UPF0016) (.1), Uncharacterized protein family (UPF0016) (.2) Potri.019G053400 [exp] 100 / 4e-24 AT5G36290 328 / 4e-113 Uncharacterized protein family (UPF0016) (.1), Uncharacterized protein family (UPF0016) (.2) Potri.010G128400 [exp] 96 / 7e-23 AT1G25520 335 / 1e-117 Uncharacterized protein family (UPF0016) (.1) Potri.008G117900 [exp] 89 / 2e-20 AT1G25520 344 / 2e-121 Uncharacterized protein family (UPF0016) (.1) Potri.019G116100 [exp] 89 / 3e-20 AT1G25520 344 / 2e-121 Uncharacterized protein family (UPF0016) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032330 [exp] 402 / 3e-139 AT1G64150 333 / 8e-113 Uncharacterized protein family (UPF0016) (.1) Lus10024713 [exp] 385 / 1e-132 AT1G64150 322 / 5e-108 Uncharacterized protein family (UPF0016) (.1) Lus10023685 [exp] 158 / 7e-45 AT4G13590 443 / 1e-156 Uncharacterized protein family (UPF0016) (.1), Uncharacterized protein family (UPF0016) (.2) Lus10011763 [exp] 158 / 9e-45 AT4G13590 429 / 6e-151 Uncharacterized protein family (UPF0016) (.1), Uncharacterized protein family (UPF0016) (.2) Lus10026995 [exp] 108 / 1e-26 AT5G36290 401 / 5e-142 Uncharacterized protein family (UPF0016) (.1), Uncharacterized protein family (UPF0016) (.2) Lus10035040 [exp] 102 / 8e-24 AT1G25520 339 / 4e-116 Uncharacterized protein family (UPF0016) (.1) Lus10034293 [exp] 95 / 2e-22 AT1G25520 349 / 2e-123 Uncharacterized protein family (UPF0016) (.1) Lus10041478 [exp] 91 / 5e-21 AT1G25520 327 / 1e-114 Uncharacterized protein family (UPF0016) (.1) Lus10020195 [exp] 84 / 5e-19 AT5G36290 321 / 5e-112 Uncharacterized protein family (UPF0016) (.1), Uncharacterized protein family (UPF0016) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0292 [poplar] [flax] LysE PF01169 [poplar] [flax] UPF0016 Uncharacterized protein family UPF0016
Representative CDS sequence Show only first row Show all	>Potri.003G134300.2 pacid=42785600 polypeptide=Potri.003G134300.2.p locus=Potri.003G134300 ID=Potri.003G134300.2.v4.1 annot-version=v4.1 ATGCCAAGCTTAACGCTCTCAGAGAGCAGTTTGATGGCACATTCATTGCCCCCATGTCCTAAACCTCTTAAACCACAAACCCTTTGCTTCCTACCTTTGA ATTCTTTCTCCAAGAAACACAACTCTTCTAAGTTTTCCTATGGAAACCACCCAAGTTCTATTTTCTCCAGGTTTTCAAGACAATGCTGCGTGAACTCATT TGAAGAGACATTTGGACTTGTTTTATCGAAGCATTCTAAGAATCGGGATGGCCTTGGGCTTAGGGACCTTGGTTGCAAGAATTACCAAAACACCACAGGA ACAGTTTCAGTTAAATCACTAGTGAAGAAAAAGTCATTAAGGGAGAATCATACGGTGGCCTCTGCACCATCAAATGGCGGTTTTCTGAAGATTTTGTTGA TCTTTGGATATCTAACACTTCAAGGCTCTCGGCCAGCAGTTGCTGGAACAGATATCTCAACTGCATTGCAATCAATTCCTTATTTAGGGGACCTTGGTGA TATTAGCACAGGTTTTGCTTCAGCATTCTTGCTTATATTTTTCTCTGAACTCGGGGATAAGACATTTTTTATTGCTGCACTTTTAGCAGCTAGGAATTCT GCTCCCATTGTTTTCACAGGAACATTTGGTGCACTTGCGGTGATGACTATCATATCTGTTGTTCTTGGAAGAACTTTCCACTATGTTGATGAAATCCTTC CATTCAGGTTGGGTGAGACTGATTTGCCTGTTGATGATATTGCTGCAGTTTGCCTTCTGGTCTATTTTGGGGTTTCAACACTTATTGATGCCACATCAAG TGATGGTCTAAAGGCAGAAGATGAACAAAAGGAGGCTGAGTTAGCAGTTTCGGAGTTATCAGGAAATGGCACTGGGATTTTAGCTGCTGCTAACACCATT ATCAGCACTTTCCTCTTGGTTTTTGTTGCGGAATGGGGTGACAAATCATTTTTCTCGACGGTTGCACTTGCAGCAGCTTCTTCACCTCTTGGTGTCATTG GTGGAGCCCTGGCTGGTCATGGTGTTGCAACTTTGATTGCAGTTTTGGGAGGTTCTTTACTTGGGGCATTCTTATCAGAAAAGGCCATTGCTTACATTGG AGGAGTTCTTTTTCTTGTCTTTGCTGCTGTAACATTGGTTGAGATTGTGAGTTAA
AA sequence Show only first row Show all	>Potri.003G134300.2 pacid=42785600 polypeptide=Potri.003G134300.2.p locus=Potri.003G134300 ID=Potri.003G134300.2.v4.1 annot-version=v4.1 MPSLTLSESSLMAHSLPPCPKPLKPQTLCFLPLNSFSKKHNSSKFSYGNHPSSIFSRFSRQCCVNSFEETFGLVLSKHSKNRDGLGLRDLGCKNYQNTTG TVSVKSLVKKKSLRENHTVASAPSNGGFLKILLIFGYLTLQGSRPAVAGTDISTALQSIPYLGDLGDISTGFASAFLLIFFSELGDKTFFIAALLAARNS APIVFTGTFGALAVMTIISVVLGRTFHYVDEILPFRLGETDLPVDDIAAVCLLVYFGVSTLIDATSSDGLKAEDEQKEAELAVSELSGNGTGILAAANTI ISTFLLVFVAEWGDKSFFSTVALAAASSPLGVIGGALAGHGVATLIAVLGGSLLGAFLSEKAIAYIGGVLFLVFAAVTLVEIVS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G64150			Uncharacterized protein family...		Potri.003G134300 [exp]	0	1
AT3G04760			Pentatricopeptide repeat (PPR-...		Potri.013G047000 [exp]	1.00	0.9897
AT2G21960			unknown protein		Potri.005G084400 [exp]	2.00	0.9862
AT1G32470			Single hybrid motif superfamil...		Potri.003G089300 [exp]	3.00	0.9789	gdcH3,Pt-GDCH.3
AT1G32080		AtLrgB	membrane protein, putative (.1...		Potri.003G099600 [exp]	3.46	0.9737
AT3G54050		HCEF1	high cyclic electron flow 1 (....		Potri.016G109000 [exp]	4.47	0.9666
AT4G09010		TL29, APX4	thylakoid lumen 29, ascorbate ...		Potri.005G161900 [exp]	6.32	0.9692
AT1G76450			Photosystem II reaction center...		Potri.005G256600 [exp]	6.92	0.9559
AT1G13820			alpha/beta-Hydrolases superfam...		Potri.010G158800 [exp]	6.92	0.9635
AT5G66530			Galactose mutarotase-like supe...		Potri.007G023200 [exp]	7.48	0.9643
AT3G63140		CSP41A	chloroplast stem-loop binding ...		Potri.002G053000 [exp]	8.48	0.9728

Compare expression of checked genes

Potri.003G134300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.