Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G24220 551 / 0 5[beta]-StR, 5[beta]-StR, 5[beta]-StR, 5[beta]-StR, 5[beta]-StR, 5[beta]-StR, AWI31, VEP1 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT5G58750 235 / 6e-74 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G120600 [exp] 700 / 0 AT4G24220 577 / 0.0 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.014G019600 [exp] 699 / 0 AT4G24220 550 / 0.0 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.014G019300 [exp] 623 / 0 AT4G24220 560 / 0.0 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.014G019500 [exp] 611 / 0 AT4G24220 541 / 0.0 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.014G019400 [exp] 608 / 0 AT4G24220 544 / 0.0 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.014G019700 [exp] 607 / 0 AT4G24220 556 / 0.0 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.002G120700 [exp] 590 / 0 AT4G24220 569 / 0.0 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.017G030600 [exp] 298 / 2e-98 AT4G24220 271 / 4e-88 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.017G030700 [exp] 293 / 7e-97 AT4G24220 292 / 2e-96 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032854 [exp] 590 / 0 AT4G24220 577 / 0.0 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10018705 [exp] 587 / 0 AT4G24220 590 / 0.0 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10018704 [exp] 503 / 5e-179 AT4G24220 530 / 0.0 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10000076 [exp] 416 / 3e-146 AT4G24220 394 / 3e-138 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10039689 [exp] 290 / 4e-95 AT4G24220 305 / 4e-101 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10039686 [exp] 289 / 5e-95 AT4G24220 302 / 5e-100 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10039687 [exp] 265 / 2e-85 AT4G24220 271 / 8e-88 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10040675 [exp] 226 / 2e-70 AT5G58750 421 / 1e-146 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10039688 [exp] 85 / 6e-19 AT4G24220 97 / 1e-23 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10024788 [exp] 77 / 2e-17 ND 81 / 6e-24
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF01370 [poplar] [flax] Epimerase NAD dependent epimerase/dehydratase family
Representative CDS sequence Show only first row Show all	>Potri.003G134500.1 pacid=42787237 polypeptide=Potri.003G134500.1.p locus=Potri.003G134500 ID=Potri.003G134500.1.v4.1 annot-version=v4.1 ATGAGCTGGTGCTGGTGGTCTGGTGCAACTGACGCTGCCAAGAAAGAAGATGAAGCAACACGAGGCTGCCAAAGCGTAGCCTTGATTATAGGAGTTACCG GGATTGTCGGCAACAGTTTGGCGGAGATCCTCCCACTCTCCGACACACCTGGTGGCCCATGGAAAGTCCACGGCGTGGCTCGTCGTTCCCGGCCCAACTG GAACCAGGATCACCCAGTGGAGTACATTCAGTGCGACATTGCTGATACAGCCCAGACCCAATCCAAGCTTTCTAAACTCACTGATGTGACCCACATCTTC TATGTTACCTGGGCCAGCAAAGACACGGAGGTCGAGAACTGTGAGATTAACGGCCTCATGTTCCGTAACGTTCTCCAGGCTGTGATACCTAATGCTCCCA ATCTTCGTCATGTCTGCCTCCAAACCGGAGGGAAGCACTATCTTGGTCCTTTTGAGTTGTTAGGCAAGATTGAAGCTCATGATCCACCTTTCACGGAAGA CTTGCCCAGACTAAATGATTTTCCCAATTTTTATTACACGTTGGAAGATGTTATGTACGAGGAAGTGGCAAAGAAAGAAGGAGTGACTTGGTCTGTTCAC CGGCCTGATGTTATCTTTGGGTTTTCGCCTCATAGCTTGATGAACATGATTGTGACTATTTCTGTTTACGCTGCAATATGCAAGCACGAGGGAGCTCCGC TAATCTTTCCTGGAACGAAAGAGGCGTGGAATAGTTATGCAATTGCTTCAGACGCGAATTTGATCGCAGAGCATGAAATTTGGGCGTGTGTGGAGCCTAA AGCAAAAAATGAAGCTTTTAATATTCACAACGGAGATATATTCAAATGGAAGCATCTGTGGACGGTTTTAGCGCAAGAGTTTGGGATTGAAAAGTATGGA TTTGTGGAAGGGGAGAGTAGTGTAACTTTTGCGGAGAAGATGAAAGACAAGGGACCAGTGTGGGAGGAAATTGTGAAGAAGAATCAGCTACTGGCTAACA AGCTGGAACAAGTTGGGGGATGGTGGTTTGGAGATTTGATGTTCAGTGGACCGGGTTGTGTCACGAGTATGAACAAGGCTAAGGAACATGGATTTTTGGG ATTTCGGAATTCCAAGAAATCATTTGTTTCTTGGATACACAAGATGAGAGCTTATAAGGTTGTGCCTTGA
AA sequence Show only first row Show all	>Potri.003G134500.1 pacid=42787237 polypeptide=Potri.003G134500.1.p locus=Potri.003G134500 ID=Potri.003G134500.1.v4.1 annot-version=v4.1 MSWCWWSGATDAAKKEDEATRGCQSVALIIGVTGIVGNSLAEILPLSDTPGGPWKVHGVARRSRPNWNQDHPVEYIQCDIADTAQTQSKLSKLTDVTHIF YVTWASKDTEVENCEINGLMFRNVLQAVIPNAPNLRHVCLQTGGKHYLGPFELLGKIEAHDPPFTEDLPRLNDFPNFYYTLEDVMYEEVAKKEGVTWSVH RPDVIFGFSPHSLMNMIVTISVYAAICKHEGAPLIFPGTKEAWNSYAIASDANLIAEHEIWACVEPKAKNEAFNIHNGDIFKWKHLWTVLAQEFGIEKYG FVEGESSVTFAEKMKDKGPVWEEIVKKNQLLANKLEQVGGWWFGDLMFSGPGCVTSMNKAKEHGFLGFRNSKKSFVSWIHKMRAYKVVP

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G24220		5[beta]-StR, 5[...	VEIN PATTERNING 1, Δ4,5-s...		Potri.003G134500 [exp]	0	1
					Potri.010G210400 [exp]	2.23	0.7503
AT3G26935			DHHC-type zinc finger family p...		Potri.012G103300 [exp]	4.89	0.6939
AT4G02340			alpha/beta-Hydrolases superfam...		Potri.013G134800 [exp]	8.77	0.6898
AT1G20030			Pathogenesis-related thaumatin...		Potri.001G220900 [exp]	11.57	0.7325
AT5G05365			Heavy metal transport/detoxifi...		Potri.010G182700 [exp]	17.66	0.6792
AT1G05260		RCI3A, RCI3	RARE COLD INDUCIBLE GENE 3, Pe...		Potri.017G037900 [exp]	35.21	0.6883
AT1G76980			unknown protein		Potri.002G075400 [exp]	38.57	0.6042
AT5G41761			unknown protein		Potri.014G095000 [exp]	40.34	0.6811
AT3G62200			Putative endonuclease or glyco...		Potri.013G003100 [exp]	42.98	0.6457
AT1G70210		ATCYCD1;1, CYCD...	CYCLIN D1;1 (.1)		Potri.014G005900 [exp]	46.95	0.5833

Compare expression of checked genes

Potri.003G134500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.